==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 07-AUG-00 1FJC . COMPND 2 MOLECULE: NUCLEOLIN RBD2; . SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; . AUTHOR F.H.-T.ALLAIN,D.E.GILBERT,P.BOUVET,J.FEIGON . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7227.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 53.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 24.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 168 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -27.9 90.1 20.8 16.2 2 2 A H + 0 0 183 3,-0.0 0, 0.0 2,-0.0 0, 0.0 0.966 360.0 160.7 -54.7 -53.7 93.2 21.6 14.1 3 3 A M - 0 0 124 1,-0.1 3,-0.1 2,-0.1 0, 0.0 0.171 53.0-101.4 52.1 175.4 93.1 18.3 12.2 4 4 A L S S- 0 0 167 1,-0.1 -1,-0.1 2,-0.0 2,-0.1 0.766 92.6 -20.4-102.4 -33.3 95.0 18.1 8.9 5 5 A E S S+ 0 0 157 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.446 91.8 102.8-177.7 96.8 92.1 18.4 6.4 6 6 A D > + 0 0 62 -2,-0.1 3,-0.9 -3,-0.1 -1,-0.1 -0.046 17.9 156.9-179.5 62.4 88.4 17.8 7.2 7 7 A P T 3 + 0 0 127 0, 0.0 -4,-0.0 0, 0.0 0, 0.0 0.098 65.2 80.6 -83.1 23.7 86.3 20.9 7.7 8 8 A C T > S- 0 0 77 3,-0.0 3,-1.2 -3,-0.0 4,-0.5 0.314 104.1-116.2-110.9 7.7 83.2 18.9 6.8 9 9 A T T < - 0 0 101 -3,-0.9 -3,-0.0 1,-0.2 0, 0.0 0.535 49.1 -95.4 71.4 1.3 82.7 17.3 10.2 10 10 A S T 3 S+ 0 0 62 1,-0.1 4,-0.3 3,-0.0 -1,-0.2 0.850 97.4 121.0 59.1 30.7 83.3 14.0 8.5 11 11 A K S X> S+ 0 0 137 -3,-1.2 3,-0.8 2,-0.1 4,-0.7 0.916 75.5 34.4 -90.6 -53.6 79.5 13.6 8.2 12 12 A K T 34 S+ 0 0 162 -4,-0.5 4,-0.1 1,-0.2 -1,-0.1 0.394 110.3 70.3 -82.4 8.5 79.0 13.3 4.4 13 13 A V T 3> S+ 0 0 66 2,-0.1 4,-0.5 -5,-0.1 3,-0.3 0.711 90.2 57.4 -95.0 -22.9 82.3 11.4 4.3 14 14 A R T X4 S+ 0 0 170 -3,-0.8 3,-0.8 -4,-0.3 -2,-0.2 0.868 98.2 59.7 -75.7 -34.8 80.9 8.3 6.0 15 15 A A G >< S+ 0 0 27 -4,-0.7 3,-1.5 1,-0.2 73,-0.4 0.723 90.6 74.1 -66.4 -16.9 78.2 7.8 3.4 16 16 A A G 34 S+ 0 0 14 -3,-0.3 -1,-0.2 1,-0.3 73,-0.2 0.923 97.0 45.2 -63.8 -41.2 81.0 7.5 0.8 17 17 A R G << S+ 0 0 97 -3,-0.8 43,-3.1 -4,-0.5 2,-0.3 0.170 111.8 69.5 -87.8 22.1 81.9 4.0 2.0 18 18 A T E < +A 59 0A 24 -3,-1.5 70,-0.6 41,-0.3 2,-0.3 -0.985 57.1 179.2-138.6 149.9 78.2 3.0 2.1 19 19 A L E -AB 58 87A 0 39,-4.4 39,-1.6 -2,-0.3 2,-0.4 -0.977 27.6-115.2-146.4 159.6 75.5 2.4 -0.5 20 20 A L E -AB 57 86A 26 66,-4.9 66,-4.7 -2,-0.3 2,-0.5 -0.819 23.6-141.5-100.0 134.1 71.8 1.4 -0.6 21 21 A A E +AB 56 85A 0 35,-4.8 35,-2.3 -2,-0.4 64,-0.2 -0.781 29.3 167.6 -94.6 131.2 70.8 -1.9 -2.2 22 22 A K E + B 0 84A 64 62,-3.6 62,-3.4 -2,-0.5 33,-0.2 -0.714 48.8 53.5-130.5-176.9 67.6 -1.9 -4.3 23 23 A N S S+ 0 0 76 60,-0.3 32,-0.1 -2,-0.2 -1,-0.1 0.709 78.9 137.8 63.1 14.9 65.7 -4.1 -6.8 24 24 A L - 0 0 8 30,-1.9 2,-0.3 -3,-0.2 31,-0.1 0.418 45.8-124.0 -67.9-144.1 66.0 -6.8 -4.1 25 25 A S - 0 0 25 30,-0.1 29,-0.2 1,-0.0 28,-0.1 -0.972 23.7 -97.0-158.8 171.7 63.1 -9.2 -3.4 26 26 A F S S+ 0 0 137 -2,-0.3 26,-0.1 1,-0.2 28,-0.1 0.621 123.6 45.5 -73.0 -8.4 60.8 -10.4 -0.6 27 27 A N S S+ 0 0 127 52,-0.1 -1,-0.2 2,-0.0 52,-0.0 0.850 94.7 80.1 -99.9 -48.5 63.1 -13.4 -0.3 28 28 A I + 0 0 6 3,-0.1 2,-0.3 51,-0.1 26,-0.1 0.020 60.2 172.7 -51.4 169.5 66.6 -12.0 -0.4 29 29 A T > - 0 0 58 1,-0.0 4,-2.7 25,-0.0 5,-0.3 -0.960 52.8 -65.5-165.2-178.6 67.9 -10.5 2.9 30 30 A E H > S+ 0 0 58 -2,-0.3 4,-3.7 1,-0.2 5,-0.3 0.869 129.0 61.4 -50.1 -32.9 71.0 -9.0 4.6 31 31 A D H > S+ 0 0 103 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.984 106.9 40.7 -59.3 -56.4 72.5 -12.5 4.2 32 32 A E H > S+ 0 0 60 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.894 118.0 49.7 -60.7 -34.9 72.3 -12.4 0.4 33 33 A L H X S+ 0 0 1 -4,-2.7 4,-2.6 2,-0.2 5,-0.4 0.911 113.8 44.5 -70.7 -38.0 73.4 -8.8 0.5 34 34 A K H X S+ 0 0 106 -4,-3.7 4,-1.2 -5,-0.3 -2,-0.2 0.800 115.6 48.8 -75.1 -24.9 76.3 -9.8 2.8 35 35 A E H < S+ 0 0 109 -4,-2.6 -2,-0.2 -5,-0.3 -1,-0.2 0.765 114.1 45.7 -84.0 -25.0 77.0 -12.8 0.5 36 36 A V H < S+ 0 0 13 -4,-1.9 -2,-0.2 -5,-0.3 -3,-0.2 0.898 125.0 30.5 -83.8 -42.6 76.9 -10.5 -2.6 37 37 A F H < S+ 0 0 4 -4,-2.6 -3,-0.2 -5,-0.2 -2,-0.2 0.937 70.3 167.1 -80.9 -49.1 79.1 -7.8 -1.2 38 38 A E < + 0 0 109 -4,-1.2 -4,-0.1 -5,-0.4 -3,-0.1 0.790 68.4 71.4 40.4 27.5 81.2 -9.9 1.1 39 39 A D S S+ 0 0 76 -5,-0.0 22,-0.7 26,-0.0 2,-0.2 0.224 78.1 83.7-152.0 14.5 83.4 -6.8 1.4 40 40 A A E S-C 60 0A 27 20,-0.2 20,-0.3 -6,-0.2 3,-0.1 -0.693 80.4-113.4-117.5 173.3 81.5 -4.3 3.5 41 41 A L E S- 0 0 96 18,-1.9 2,-0.3 1,-0.3 19,-0.2 0.920 85.9 -41.5 -73.1 -42.2 81.1 -3.7 7.2 42 42 A E E -C 59 0A 99 17,-1.6 17,-2.7 -3,-0.0 2,-0.4 -0.963 52.0-124.2-177.1 161.4 77.4 -4.6 7.2 43 43 A I E -C 58 0A 15 -2,-0.3 15,-0.3 15,-0.2 2,-0.2 -0.927 16.8-153.6-122.4 146.9 74.1 -4.2 5.3 44 44 A R - 0 0 155 13,-3.8 2,-0.3 -2,-0.4 -23,-0.2 -0.701 15.7-123.8-112.2 166.7 70.7 -2.9 6.5 45 45 A L - 0 0 76 11,-0.3 11,-0.4 -2,-0.2 2,-0.3 -0.718 20.7-171.0-108.9 161.8 67.2 -3.6 5.2 46 46 A V E +D 55 0B 44 9,-3.4 9,-2.4 -2,-0.3 7,-0.5 -0.919 13.0 155.2-156.0 125.9 64.5 -1.2 3.9 47 47 A S E - 0 0 54 -2,-0.3 5,-0.3 1,-0.3 9,-0.0 -0.507 46.2 -66.7-130.2-160.2 60.8 -1.7 3.0 48 48 A Q E > S-D 51 0B 102 3,-3.0 3,-0.7 -2,-0.2 -1,-0.3 -0.124 77.3 -62.7 -84.3-171.9 57.7 0.4 2.7 49 49 A D T 3 S- 0 0 176 1,-0.3 -1,-0.1 3,-0.1 3,-0.1 0.805 130.4 -17.3 -43.7 -26.4 55.8 2.0 5.6 50 50 A G T 3 S+ 0 0 57 1,-0.2 -1,-0.3 2,-0.0 2,-0.2 -0.007 122.2 77.7-176.4 53.6 55.4 -1.6 6.8 51 51 A K E < S-D 48 0B 136 -3,-0.7 -3,-3.0 0, 0.0 -1,-0.2 -0.753 85.0 -95.4-171.0 119.0 56.0 -4.1 4.0 52 52 A S E + 0 0 37 -5,-0.3 -5,-0.2 -2,-0.2 -26,-0.1 -0.031 40.1 175.5 -37.6 127.8 59.2 -5.5 2.4 53 53 A K E - 0 0 117 -7,-0.5 -6,-0.2 2,-0.2 -1,-0.2 0.578 52.5-102.9-113.7 -18.4 59.9 -3.3 -0.6 54 54 A G E S+ 0 0 4 -8,-0.5 -30,-1.9 1,-0.3 2,-0.3 0.698 77.6 128.3 102.5 25.1 63.2 -4.8 -1.6 55 55 A I E +D 46 0B 22 -9,-2.4 -9,-3.4 -33,-0.2 -1,-0.3 -0.808 27.0 169.9-112.3 155.5 65.5 -2.1 -0.3 56 56 A A E -A 21 0A 0 -35,-2.3 -35,-4.8 -11,-0.4 -11,-0.3 -0.969 27.9-125.0-161.2 144.0 68.5 -2.4 2.0 57 57 A Y E -A 20 0A 102 -2,-0.3 -13,-3.8 -37,-0.3 2,-0.4 -0.566 22.0-165.3 -90.1 157.1 71.4 -0.2 3.2 58 58 A I E -AC 19 43A 0 -39,-1.6 -39,-4.4 -15,-0.3 2,-0.6 -0.911 7.6-172.5-146.3 117.4 75.0 -1.2 2.9 59 59 A E E -AC 18 42A 59 -17,-2.7 -18,-1.9 -2,-0.4 -17,-1.6 -0.901 12.1-167.7-113.7 111.1 78.1 0.4 4.6 60 60 A F E - C 0 40A 0 -43,-3.1 -20,-0.2 -2,-0.6 -43,-0.1 -0.216 37.3-103.5 -85.1-178.6 81.5 -0.9 3.4 61 61 A K S S- 0 0 130 -22,-0.7 2,-0.3 1,-0.2 -44,-0.1 0.714 99.9 -2.4 -79.7 -18.4 84.8 -0.3 5.2 62 62 A S S > S- 0 0 37 -45,-0.3 4,-2.7 1,-0.1 3,-0.5 -0.992 77.2 -98.8-163.9 161.6 85.7 2.4 2.6 63 63 A E H > S+ 0 0 73 -2,-0.3 4,-3.3 1,-0.3 5,-0.3 0.928 123.7 54.1 -54.4 -43.7 84.4 4.1 -0.6 64 64 A A H > S+ 0 0 66 2,-0.2 4,-3.1 3,-0.2 5,-0.3 0.881 110.4 48.0 -60.5 -33.4 86.6 1.8 -2.7 65 65 A D H > S+ 0 0 26 -3,-0.5 4,-2.6 2,-0.2 5,-0.4 0.983 116.8 39.4 -71.1 -55.6 85.0 -1.2 -0.9 66 66 A A H X S+ 0 0 0 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.858 123.6 44.3 -62.4 -31.5 81.4 0.0 -1.4 67 67 A E H X S+ 0 0 92 -4,-3.3 4,-2.4 -5,-0.4 5,-0.5 0.949 112.8 47.9 -79.0 -50.0 82.4 1.2 -4.9 68 68 A K H X S+ 0 0 117 -4,-3.1 4,-3.0 -5,-0.3 5,-0.2 0.914 121.5 39.2 -57.8 -39.2 84.4 -1.9 -6.0 69 69 A N H X>S+ 0 0 4 -4,-2.6 4,-2.6 -5,-0.3 5,-1.0 0.962 112.5 53.5 -75.9 -51.9 81.5 -4.0 -4.7 70 70 A L H <5S+ 0 0 22 -4,-2.1 -2,-0.2 -5,-0.4 -1,-0.2 0.855 124.5 30.5 -51.9 -32.1 78.7 -1.8 -5.9 71 71 A E H <5S+ 0 0 144 -4,-2.4 -2,-0.2 2,-0.1 -1,-0.2 0.895 114.6 56.4 -93.4 -51.8 80.3 -2.0 -9.3 72 72 A E H <5S+ 0 0 124 -4,-3.0 -3,-0.2 -5,-0.5 -2,-0.2 0.833 131.9 14.1 -50.9 -30.1 82.0 -5.4 -9.3 73 73 A K T ><5S+ 0 0 77 -4,-2.6 3,-1.3 -5,-0.2 -3,-0.2 0.779 74.6 163.8-110.6 -62.9 78.5 -6.9 -8.6 74 74 A Q T 3 +E 81 0C 34 3,-2.0 3,-4.4 -3,-0.2 -1,-0.1 -0.938 51.4 15.8-137.2 161.5 69.6 -12.8 -7.4 79 79 A D T 3 S- 0 0 55 1,-0.3 -1,-0.1 -2,-0.3 -53,-0.1 0.869 132.5 -61.3 45.1 35.6 66.1 -13.7 -6.4 80 80 A G T 3 S+ 0 0 73 -3,-0.1 2,-0.3 1,-0.1 -1,-0.3 0.681 131.6 79.0 67.3 12.8 65.3 -13.5 -10.2 81 81 A R E < S-E 78 0C 138 -3,-4.4 -3,-2.0 -6,-0.1 2,-0.4 -0.971 83.9-118.5-152.6 134.6 66.4 -9.8 -10.0 82 82 A S E - 0 0 56 -2,-0.3 2,-0.4 -5,-0.3 -6,-0.3 -0.574 35.7-117.2 -75.2 128.0 69.8 -8.1 -9.9 83 83 A V E -E 75 0C 1 -8,-3.6 -8,-1.7 -2,-0.4 -60,-0.3 -0.474 30.1-134.4 -65.8 118.7 70.2 -6.1 -6.6 84 84 A S E -B 22 0A 26 -62,-3.4 -62,-3.6 -2,-0.4 2,-0.6 -0.499 11.4-138.6 -75.1 142.4 70.5 -2.5 -7.6 85 85 A L E -B 21 0A 13 -64,-0.2 2,-0.7 -2,-0.2 -64,-0.2 -0.879 18.5-175.2-105.5 117.2 73.4 -0.5 -5.9 86 86 A Y E -B 20 0A 102 -66,-4.7 -66,-4.9 -2,-0.6 5,-0.1 -0.820 13.1-155.3-113.2 96.3 72.5 3.0 -4.8 87 87 A Y E -B 19 0A 25 -2,-0.7 -67,-0.3 -68,-0.3 -68,-0.2 0.220 7.9-166.2 -52.0-171.3 75.5 4.8 -3.4 88 88 A T + 0 0 35 -70,-0.6 -72,-0.1 -73,-0.4 -71,-0.1 0.140 57.8 96.0-173.2 34.9 75.0 7.7 -0.9 89 89 A G S S- 0 0 18 -73,-0.2 -73,-0.2 -75,-0.1 -74,-0.1 0.443 112.4 -7.2-111.4 -3.0 78.3 9.6 -0.5 90 90 A E S S+ 0 0 162 -75,-0.2 -3,-0.0 -74,-0.1 3,-0.0 0.195 129.2 56.2-179.1 29.9 77.5 12.4 -3.0 91 91 A K S S+ 0 0 164 -5,-0.1 -3,-0.1 0, 0.0 -4,-0.0 0.510 80.0 73.8-134.3 -65.8 74.3 11.5 -4.9 92 92 A G - 0 0 56 -5,-0.1 2,-0.2 1,-0.0 -4,-0.1 0.095 58.9-169.2 -46.4 172.3 71.2 10.9 -2.7 93 93 A G + 0 0 72 -3,-0.0 2,-0.2 2,-0.0 -1,-0.0 -0.677 22.2 151.3-172.1 112.3 69.7 14.0 -1.1 94 94 A T - 0 0 128 -2,-0.2 -2,-0.0 0, 0.0 -1,-0.0 -0.625 41.1-132.8-149.4 86.1 67.0 14.3 1.6 95 95 A R 0 0 248 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.102 360.0 360.0 -39.8 109.0 67.1 17.5 3.8 96 96 A G 0 0 150 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.031 360.0 360.0-147.1 360.0 66.7 15.9 7.2