==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 03-JAN-06 2FJZ . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN PRECURSOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.K.-W.KONG,M.W.PARKER . 59 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4107.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 37.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 22.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 131 A E 0 0 183 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 136.4 6.6 -3.1 12.5 2 132 A A - 0 0 78 1,-0.1 2,-0.2 55,-0.1 54,-0.0 -0.466 360.0 -74.0-108.5-176.0 9.1 -0.7 14.0 3 133 A a - 0 0 63 -2,-0.2 2,-0.5 54,-0.1 54,-0.2 -0.526 44.0-133.6 -76.9 153.4 10.0 2.8 12.8 4 134 A K E -A 56 0A 132 52,-2.7 52,-3.0 -2,-0.2 2,-0.5 -0.943 6.8-146.3-114.2 131.5 12.1 3.3 9.7 5 135 A F E -A 55 0A 118 -2,-0.5 2,-0.3 50,-0.2 50,-0.2 -0.823 24.7-178.4 -95.8 128.6 15.0 5.7 9.4 6 136 A L E -A 54 0A 38 48,-2.7 48,-2.5 -2,-0.5 2,-0.4 -0.925 19.4-154.6-131.9 153.7 15.5 7.4 6.0 7 137 A H E +A 53 0A 106 -2,-0.3 2,-0.4 46,-0.2 46,-0.2 -0.997 16.1 174.0-129.2 124.4 17.9 9.8 4.4 8 138 A Q E +A 52 0A 75 44,-2.8 44,-2.8 -2,-0.4 2,-0.3 -0.982 8.6 154.4-134.0 124.8 16.9 12.0 1.5 9 139 A E E -A 51 0A 84 -2,-0.4 2,-0.3 42,-0.3 42,-0.3 -0.877 22.0-150.5-134.7 171.2 19.1 14.7 -0.1 10 140 A R - 0 0 87 40,-2.5 -2,-0.0 -2,-0.3 0, 0.0 -0.964 12.1-156.2-142.3 160.8 19.4 16.4 -3.5 11 141 A M S S+ 0 0 179 -2,-0.3 3,-0.1 1,-0.1 -1,-0.0 0.352 82.6 67.8-117.4 4.0 22.2 18.0 -5.4 12 142 A D S S+ 0 0 118 1,-0.2 2,-0.3 38,-0.1 -1,-0.1 0.635 106.0 9.8 -99.7 -19.4 20.3 20.4 -7.7 13 143 A V - 0 0 59 37,-0.1 2,-0.4 36,-0.0 -1,-0.2 -0.992 62.1-126.6-158.6 151.1 18.9 23.0 -5.3 14 144 A b - 0 0 35 -2,-0.3 2,-0.3 -3,-0.1 36,-0.2 -0.835 34.1-172.1 -99.6 148.4 19.2 24.1 -1.7 15 145 A E B -B 49 0A 60 34,-2.9 34,-2.1 -2,-0.4 29,-0.2 -0.930 20.4 -99.5-141.2 164.7 15.9 24.4 0.3 16 146 A T > - 0 0 46 -2,-0.3 4,-2.2 32,-0.2 5,-0.2 -0.216 37.6-102.7 -81.3 167.5 14.5 25.7 3.6 17 147 A H H > S+ 0 0 85 30,-0.4 4,-3.1 1,-0.2 5,-0.3 0.918 122.0 57.2 -50.4 -48.7 13.6 23.8 6.8 18 148 A L H > S+ 0 0 122 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.910 106.0 48.3 -52.6 -47.9 9.9 24.1 5.8 19 149 A H H > S+ 0 0 40 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.949 114.8 44.9 -57.8 -48.3 10.5 22.3 2.4 20 150 A W H X S+ 0 0 2 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.872 111.3 51.8 -70.4 -32.6 12.5 19.5 4.1 21 151 A H H X S+ 0 0 50 -4,-3.1 4,-2.6 2,-0.2 -1,-0.2 0.904 110.8 50.6 -64.9 -41.8 10.0 19.1 6.9 22 152 A T H X S+ 0 0 46 -4,-2.3 4,-2.5 -5,-0.3 -2,-0.2 0.923 109.9 49.3 -61.0 -48.4 7.3 18.8 4.2 23 153 A V H X S+ 0 0 21 -4,-2.6 4,-2.5 2,-0.2 5,-0.2 0.914 112.4 47.7 -54.7 -48.7 9.3 16.2 2.3 24 154 A A H X S+ 0 0 0 -4,-2.5 4,-2.4 1,-0.2 5,-0.2 0.943 113.4 47.2 -63.1 -46.6 9.9 14.1 5.4 25 155 A K H X S+ 0 0 98 -4,-2.6 4,-2.0 1,-0.2 10,-0.2 0.926 115.8 44.5 -59.4 -45.5 6.2 14.3 6.5 26 156 A E H X S+ 0 0 120 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.847 111.0 53.0 -73.9 -33.3 4.9 13.4 3.0 27 157 A T H X S+ 0 0 18 -4,-2.5 4,-0.9 -5,-0.2 -1,-0.2 0.928 109.1 49.0 -66.8 -44.9 7.4 10.6 2.5 28 158 A c H ><>S+ 0 0 0 -4,-2.4 5,-1.7 -5,-0.2 3,-1.2 0.942 111.1 51.2 -58.0 -43.9 6.4 8.9 5.7 29 159 A S H ><5S+ 0 0 75 -4,-2.0 3,-1.7 1,-0.3 -1,-0.2 0.873 104.1 56.8 -64.0 -36.4 2.8 9.2 4.8 30 160 A E H 3<5S+ 0 0 154 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.695 107.3 51.0 -64.8 -20.6 3.4 7.6 1.4 31 161 A K T <<5S- 0 0 111 -3,-1.2 -1,-0.3 -4,-0.9 -2,-0.2 0.077 122.8-105.4-104.6 23.0 4.8 4.7 3.3 32 162 A S T < 5S+ 0 0 84 -3,-1.7 27,-0.6 1,-0.2 2,-0.3 0.906 87.8 100.9 55.5 47.9 1.8 4.3 5.5 33 163 A T E < -C 58 0A 8 -5,-1.7 2,-0.4 25,-0.2 -1,-0.2 -0.871 69.0-115.8-143.9 175.2 3.5 5.8 8.6 34 164 A N E -C 57 0A 86 23,-2.7 23,-3.0 -2,-0.3 2,-0.1 -0.973 31.4-112.9-119.1 137.2 3.7 9.2 10.5 35 165 A L E +C 56 0A 37 -2,-0.4 21,-0.2 -10,-0.2 3,-0.1 -0.438 35.0 173.5 -62.4 133.7 6.9 11.3 10.8 36 166 A H E - 0 0 145 19,-2.9 2,-0.3 1,-0.4 -1,-0.2 0.775 60.8 -6.3-110.0 -44.7 8.1 11.4 14.3 37 167 A D E +C 55 0A 102 18,-1.1 18,-2.8 -13,-0.1 -1,-0.4 -0.983 58.6 174.7-152.6 160.3 11.4 13.2 14.1 38 168 A Y E -C 54 0A 56 -2,-0.3 2,-0.3 16,-0.2 16,-0.2 -0.982 13.2-157.3-158.4 161.5 13.8 14.6 11.6 39 169 A G E -C 53 0A 27 14,-2.4 14,-2.5 -2,-0.3 -2,-0.0 -0.977 25.8-118.4-148.3 135.8 17.0 16.6 11.2 40 170 A M E -C 52 0A 49 -2,-0.3 2,-0.3 12,-0.2 12,-0.3 -0.229 27.0-147.2 -72.5 163.6 18.3 18.6 8.2 41 171 A L E +C 51 0A 29 10,-2.2 9,-1.7 1,-0.2 10,-1.2 -0.940 60.6 12.1-129.5 149.0 21.5 17.8 6.3 42 172 A L E S- 0 0 77 -2,-0.3 8,-0.6 7,-0.2 -1,-0.2 0.917 74.7-136.2 58.8 59.3 24.2 19.7 4.5 43 173 A P E -C 49 0A 96 0, 0.0 2,-0.3 0, 0.0 6,-0.3 -0.194 27.4-170.9 -50.3 139.5 23.4 23.4 5.4 44 174 A b E > -C 48 0A 26 4,-2.8 4,-2.2 -29,-0.2 3,-0.4 -0.971 43.0 -13.4-140.9 144.4 23.7 25.6 2.4 45 175 A G T 4 S- 0 0 77 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.261 109.7 -49.2 60.6-151.3 23.7 29.3 1.8 46 176 A I T 4 S+ 0 0 158 1,-0.1 -1,-0.2 -3,-0.0 0, 0.0 0.704 134.0 5.2 -91.5 -19.8 22.6 31.4 4.8 47 177 A D T 4 S+ 0 0 81 -3,-0.4 -30,-0.4 2,-0.0 2,-0.2 0.253 107.4 90.3-150.7 19.8 19.4 29.5 5.7 48 178 A K E < - C 0 44A 77 -4,-2.2 -4,-2.8 -32,-0.1 2,-0.3 -0.543 46.4-158.1-122.0-178.9 19.0 26.5 3.5 49 179 A F E -BC 15 43A 48 -34,-2.1 -34,-2.9 -6,-0.3 -7,-0.2 -0.957 19.8-137.1-152.7 160.5 19.9 22.8 3.4 50 180 A R E S- 0 0 89 -9,-1.7 -40,-2.5 -8,-0.6 2,-0.3 0.339 77.0 -6.4-113.6 5.3 20.3 20.0 0.9 51 181 A G E -AC 9 41A 0 -10,-1.2 -10,-2.2 -42,-0.3 2,-0.3 -0.990 53.5-130.0-173.0-172.9 18.6 17.1 2.6 52 182 A V E -AC 8 40A 0 -44,-2.8 -44,-2.8 -2,-0.3 2,-0.4 -0.987 5.3-154.6-149.6 141.7 16.8 15.6 5.6 53 183 A E E +AC 7 39A 77 -14,-2.5 -14,-2.4 -2,-0.3 2,-0.3 -0.968 31.1 168.5-115.0 142.7 17.1 12.4 7.7 54 184 A F E -AC 6 38A 2 -48,-2.5 -48,-2.7 -2,-0.4 2,-0.5 -0.963 34.7-125.8-154.5 160.9 14.0 11.3 9.5 55 185 A V E -AC 5 37A 45 -18,-2.8 -19,-2.9 -2,-0.3 -18,-1.1 -0.963 19.4-163.6-120.1 120.0 12.2 8.6 11.4 56 186 A c E -AC 4 35A 2 -52,-3.0 -52,-2.7 -2,-0.5 -21,-0.2 -0.884 12.8-164.6-102.0 131.8 8.8 7.3 10.2 57 187 A a E - C 0 34A 24 -23,-3.0 -23,-2.7 -2,-0.5 -54,-0.1 -0.838 29.3 -79.3-121.7 155.4 6.8 5.3 12.8 58 188 A P E C 0 33A 46 0, 0.0 -25,-0.2 0, 0.0 -1,-0.1 -0.109 360.0 360.0 -51.0 141.5 3.7 3.1 12.6 59 189 A L 0 0 156 -27,-0.6 -26,-0.1 -26,-0.0 -27,-0.0 0.638 360.0 360.0 -56.0 360.0 0.3 4.7 12.3