==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 09-AUG-00 1FKC . COMPND 2 MOLECULE: PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.ZHANG,W.SWIETNICKI,M.G.ZAGORSKI,W.K.SUREWICZ, . 107 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7321.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 66.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L 0 0 115 0, 0.0 2,-0.1 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0 150.8 -5.0 12.2 -2.4 2 126 A G + 0 0 71 2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.474 360.0 40.0 124.0 -60.9 -8.0 14.4 -1.6 3 127 A G S S+ 0 0 58 -2,-0.1 2,-0.2 2,-0.1 0, 0.0 0.138 106.0 82.8-106.2 17.8 -11.0 12.2 -2.1 4 128 A Y S S- 0 0 50 36,-0.1 2,-0.3 54,-0.0 -2,-0.2 -0.626 72.8-120.6-114.4 174.5 -9.3 9.2 -0.5 5 129 A M E -A 39 0A 108 34,-2.2 34,-1.6 -2,-0.2 2,-0.5 -0.818 18.4-131.8-116.5 155.7 -8.8 8.0 3.0 6 130 A L E -A 38 0A 76 -2,-0.3 2,-0.6 32,-0.2 32,-0.2 -0.926 9.1-155.6-114.1 132.4 -5.6 7.2 4.9 7 131 A G E -A 37 0A 4 30,-3.0 30,-1.1 -2,-0.5 3,-0.1 -0.911 22.1-128.0-107.7 117.6 -4.9 4.1 6.9 8 132 A S - 0 0 87 -2,-0.6 29,-0.2 28,-0.2 -1,-0.1 0.105 47.7 -61.5 -52.9 172.0 -2.3 4.4 9.7 9 133 A A + 0 0 54 1,-0.1 27,-0.2 27,-0.1 -1,-0.1 -0.241 59.3 157.1 -59.5 144.8 0.6 2.0 10.0 10 134 A M - 0 0 54 25,-0.7 2,-0.2 -3,-0.1 -1,-0.1 0.514 61.0 -34.2-130.6 -71.0 -0.1 -1.7 10.5 11 135 A S - 0 0 79 24,-0.3 0, 0.0 78,-0.0 0, 0.0 -0.825 54.5-114.1-167.1 122.6 2.6 -4.1 9.4 12 136 A R - 0 0 92 -2,-0.2 23,-0.1 1,-0.1 74,-0.1 -0.455 42.0-126.4 -63.2 107.5 5.1 -3.9 6.6 13 137 A P - 0 0 18 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.156 19.4-114.9 -55.1 147.6 4.1 -6.8 4.2 14 138 A I - 0 0 92 74,-0.0 2,-0.3 71,-0.0 9,-0.0 -0.761 37.8-175.7 -90.3 124.3 6.8 -9.4 3.3 15 139 A I - 0 0 14 -2,-0.5 2,-0.5 8,-0.1 12,-0.1 -0.896 19.2-147.1-122.4 152.5 7.7 -9.4 -0.4 16 140 A H + 0 0 137 -2,-0.3 4,-0.1 1,-0.1 -2,-0.0 -0.962 27.8 156.0-121.2 114.8 10.0 -11.6 -2.5 17 141 A F - 0 0 40 -2,-0.5 -1,-0.1 2,-0.3 3,-0.1 0.756 68.3 -28.0 -99.7 -93.0 11.7 -9.9 -5.5 18 142 A G S S- 0 0 53 1,-0.3 2,-0.2 2,-0.0 -2,-0.0 0.904 100.9 -57.8 -92.8 -75.5 14.9 -11.5 -6.8 19 143 A S S > S- 0 0 68 0, 0.0 4,-2.7 0, 0.0 -1,-0.3 -0.635 77.5 -46.9-148.6-154.3 16.9 -13.3 -4.1 20 144 A D H > S+ 0 0 115 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.801 127.0 64.3 -60.0 -29.7 18.5 -12.8 -0.7 21 145 A Y H > S+ 0 0 176 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.965 112.7 30.2 -58.7 -56.3 20.1 -9.6 -2.0 22 146 A E H > S+ 0 0 41 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.865 117.3 59.7 -71.7 -38.1 16.8 -7.8 -2.6 23 147 A D H X S+ 0 0 19 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.931 111.8 38.4 -55.8 -50.4 15.1 -9.6 0.3 24 148 A R H X S+ 0 0 187 -4,-2.6 4,-1.8 2,-0.2 -1,-0.2 0.803 112.4 60.4 -71.9 -29.9 17.6 -8.3 2.8 25 149 A Y H X S+ 0 0 77 -4,-1.4 4,-0.8 -5,-0.3 -2,-0.2 0.969 112.3 35.6 -61.5 -55.3 17.7 -4.9 1.1 26 150 A Y H >X S+ 0 0 0 -4,-2.6 3,-1.0 1,-0.2 4,-0.7 0.926 114.8 57.0 -64.1 -46.8 14.0 -4.2 1.5 27 151 A R H 3< S+ 0 0 97 -4,-2.1 3,-0.4 -5,-0.3 -1,-0.2 0.828 111.2 43.9 -53.8 -35.5 13.9 -5.9 5.0 28 152 A E H 3< S+ 0 0 137 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.618 115.6 48.5 -85.4 -15.0 16.7 -3.5 6.1 29 153 A N H XX S+ 0 0 38 -3,-1.0 3,-1.1 -4,-0.8 4,-0.9 0.301 77.4 103.8-106.1 6.6 14.9 -0.5 4.5 30 154 A M G >< S+ 0 0 18 -4,-0.7 3,-0.8 -3,-0.4 -1,-0.1 0.865 76.4 60.0 -55.4 -37.8 11.5 -1.2 5.9 31 155 A H G 34 S+ 0 0 138 1,-0.3 -1,-0.3 -3,-0.2 -2,-0.1 0.823 109.4 42.5 -60.4 -32.0 12.0 1.6 8.4 32 156 A R G <4 S+ 0 0 121 -3,-1.1 -1,-0.3 -4,-0.1 -2,-0.2 0.534 101.3 90.4 -90.9 -8.8 12.4 4.0 5.5 33 157 A Y S << S- 0 0 8 -4,-0.9 2,-0.1 -3,-0.8 -21,-0.1 -0.692 85.4-107.9 -91.5 141.3 9.5 2.4 3.7 34 158 A P - 0 0 13 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 -0.367 24.9-172.7 -67.4 143.0 5.9 3.7 4.2 35 159 A N + 0 0 46 -4,-0.1 -25,-0.7 -23,-0.1 2,-0.4 0.256 61.8 83.7-117.7 7.4 3.5 1.5 6.2 36 160 A Q - 0 0 68 -27,-0.2 2,-0.3 -26,-0.1 -28,-0.2 -0.883 56.3-171.4-114.9 145.2 0.4 3.6 5.5 37 161 A V E -A 7 0A 0 -30,-1.1 -30,-3.0 -2,-0.4 2,-0.5 -0.860 22.2-121.2-131.4 166.3 -1.9 3.5 2.4 38 162 A Y E -A 6 0A 18 17,-0.6 2,-0.3 -2,-0.3 21,-0.2 -0.941 31.1-179.7-113.7 119.4 -4.8 5.4 0.9 39 163 A Y E -A 5 0A 41 -34,-1.6 -34,-2.2 -2,-0.5 13,-0.1 -0.905 12.2-150.8-120.2 147.8 -8.1 3.6 0.3 40 164 A R - 0 0 85 -2,-0.3 -36,-0.1 11,-0.3 3,-0.1 -0.815 33.7 -85.3-114.9 155.8 -11.4 4.8 -1.1 41 165 A P - 0 0 72 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.095 53.6 -94.3 -54.2 154.0 -15.0 3.7 -0.5 42 166 A M - 0 0 29 55,-0.1 4,-0.1 1,-0.1 3,-0.1 -0.565 47.0-173.5 -76.3 131.9 -16.4 0.7 -2.4 43 167 A D - 0 0 84 -2,-0.3 -1,-0.1 1,-0.3 3,-0.0 -0.136 44.4 -25.5-105.6-157.6 -18.3 1.6 -5.6 44 168 A E S S+ 0 0 147 1,-0.2 -1,-0.3 -2,-0.1 3,-0.2 -0.217 126.9 16.4 -55.0 141.4 -20.3 -0.4 -8.2 45 169 A Y S S- 0 0 202 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.990 91.7-128.5 55.2 74.1 -19.3 -4.0 -8.4 46 170 A S + 0 0 50 -4,-0.1 2,-0.3 4,-0.1 -1,-0.2 -0.347 43.5 163.8 -56.1 112.4 -17.3 -4.4 -5.1 47 171 A N > - 0 0 70 -2,-0.3 4,-1.2 -3,-0.2 -4,-0.1 -0.978 43.4-144.1-135.8 147.9 -14.0 -5.9 -6.1 48 172 A Q H > S+ 0 0 106 -2,-0.3 4,-2.0 2,-0.2 5,-0.3 0.694 98.6 63.9 -81.3 -20.8 -10.6 -6.2 -4.4 49 173 A N H > S+ 0 0 76 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.940 109.1 36.6 -68.6 -48.4 -8.8 -5.8 -7.7 50 174 A N H > S+ 0 0 77 2,-0.2 4,-2.1 1,-0.2 5,-0.3 0.854 115.6 56.6 -71.9 -36.2 -10.0 -2.2 -8.3 51 175 A F H X S+ 0 0 17 -4,-1.2 4,-0.8 1,-0.2 -11,-0.3 0.938 115.7 34.3 -60.6 -51.2 -9.8 -1.3 -4.6 52 176 A V H X S+ 0 0 18 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.853 114.3 59.2 -74.5 -36.6 -6.2 -2.2 -4.2 53 177 A H H X S+ 0 0 139 -4,-2.0 4,-1.5 -5,-0.3 3,-0.3 0.957 109.9 40.8 -57.1 -55.3 -5.1 -1.1 -7.7 54 178 A D H X S+ 0 0 60 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.770 114.2 56.4 -64.7 -26.1 -6.3 2.5 -7.2 55 179 A a H X S+ 0 0 2 -4,-0.8 4,-2.1 -5,-0.3 -17,-0.6 0.842 103.1 53.6 -74.4 -35.9 -4.8 2.4 -3.7 56 180 A V H X S+ 0 0 19 -4,-2.2 4,-2.3 -3,-0.3 5,-0.3 0.956 108.5 46.5 -64.5 -54.1 -1.3 1.4 -4.9 57 181 A N H X S+ 0 0 83 -4,-1.5 4,-2.3 1,-0.2 -1,-0.2 0.895 116.3 45.1 -57.4 -44.2 -0.9 4.3 -7.4 58 182 A I H X S+ 0 0 18 -4,-1.3 4,-1.5 2,-0.2 -1,-0.2 0.908 111.0 53.2 -68.0 -43.0 -2.1 6.9 -4.9 59 183 A T H X S+ 0 0 0 -4,-2.1 4,-2.1 -21,-0.2 5,-0.2 0.933 116.5 37.4 -58.3 -49.7 -0.1 5.6 -2.0 60 184 A I H X S+ 0 0 21 -4,-2.3 4,-2.4 1,-0.2 5,-0.2 0.907 116.0 52.7 -70.1 -42.7 3.2 5.6 -3.8 61 185 A K H < S+ 0 0 118 -4,-2.3 4,-0.3 -5,-0.3 -1,-0.2 0.723 112.9 47.9 -65.0 -21.6 2.4 8.9 -5.7 62 186 A Q H X S+ 0 0 24 -4,-1.5 4,-2.0 -5,-0.1 3,-0.5 0.897 113.6 42.0 -85.4 -47.4 1.6 10.4 -2.3 63 187 A H H X>S+ 0 0 17 -4,-2.1 5,-1.4 1,-0.2 4,-0.8 0.874 107.1 61.8 -69.1 -38.3 4.7 9.4 -0.3 64 188 A T H <5S+ 0 0 42 -4,-2.4 -1,-0.2 -5,-0.2 10,-0.2 0.765 111.1 42.3 -59.1 -25.1 7.1 10.1 -3.2 65 189 A V H 45S+ 0 0 80 -3,-0.5 -2,-0.2 -4,-0.3 -1,-0.2 0.925 130.8 18.0 -86.7 -55.1 6.0 13.7 -2.9 66 190 A T H >X5S+ 0 0 50 -4,-2.0 3,-1.4 2,-0.2 4,-1.1 0.925 125.1 50.1 -85.0 -52.3 5.8 14.4 0.9 67 191 A T H 3X5S+ 0 0 22 -4,-0.8 4,-1.0 -5,-0.3 5,-0.4 0.863 108.8 54.1 -56.3 -38.7 7.9 11.6 2.4 68 192 A T H 34 - 0 0 70 -2,-0.7 4,-2.5 1,-0.0 5,-0.3 -0.162 51.7 -74.5 -96.7-167.1 14.4 6.0 -6.1 76 200 A K H > S+ 0 0 166 1,-0.2 4,-1.3 2,-0.2 -2,-0.0 0.909 135.2 45.3 -57.3 -45.1 13.6 3.5 -8.9 77 201 A T H > S+ 0 0 47 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.824 110.6 55.8 -68.4 -32.0 14.3 0.6 -6.7 78 202 A D H > S+ 0 0 8 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.930 107.8 45.7 -66.5 -47.6 12.3 2.2 -3.8 79 203 A V H X S+ 0 0 41 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.802 107.8 61.2 -66.5 -28.5 9.1 2.6 -5.9 80 204 A K H X S+ 0 0 77 -4,-1.3 4,-1.2 -5,-0.3 -2,-0.2 0.972 111.8 35.0 -61.8 -55.8 9.6 -1.0 -7.2 81 205 A M H X S+ 0 0 0 -4,-1.8 4,-3.0 1,-0.2 5,-0.3 0.874 114.0 60.4 -66.5 -37.2 9.3 -2.6 -3.7 82 206 A M H X S+ 0 0 1 -4,-2.4 4,-2.8 1,-0.2 5,-0.3 0.875 100.3 55.9 -57.2 -39.6 6.8 0.1 -2.7 83 207 A E H X S+ 0 0 103 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.900 113.7 39.3 -60.1 -43.3 4.5 -1.1 -5.5 84 208 A R H X S+ 0 0 132 -4,-1.2 4,-1.4 -3,-0.2 -2,-0.2 0.902 118.4 46.4 -73.5 -45.1 4.5 -4.7 -4.1 85 209 A V H X S+ 0 0 2 -4,-3.0 4,-1.7 1,-0.2 -2,-0.2 0.872 113.8 48.2 -67.2 -39.0 4.4 -3.7 -0.4 86 210 A V H X S+ 0 0 1 -4,-2.8 4,-2.2 -5,-0.3 -1,-0.2 0.873 104.1 61.2 -70.0 -36.9 1.6 -1.2 -0.9 87 211 A E H X S+ 0 0 78 -4,-1.3 4,-1.2 -5,-0.3 -1,-0.2 0.909 108.0 44.1 -55.6 -43.7 -0.4 -3.7 -2.9 88 212 A Q H X S+ 0 0 64 -4,-1.4 4,-1.8 1,-0.2 3,-0.2 0.899 111.2 53.6 -67.7 -41.6 -0.6 -6.0 0.1 89 213 A M H X S+ 0 0 2 -4,-1.7 4,-1.5 1,-0.2 -1,-0.2 0.801 104.9 56.1 -63.3 -29.4 -1.3 -3.1 2.4 90 214 A a H X S+ 0 0 0 -4,-2.2 4,-1.4 2,-0.2 -1,-0.2 0.863 104.5 52.1 -71.1 -35.7 -4.2 -2.2 0.2 91 215 A I H X S+ 0 0 66 -4,-1.2 4,-1.6 -3,-0.2 -2,-0.2 0.904 105.1 55.5 -66.0 -41.8 -5.7 -5.7 0.5 92 216 A T H X S+ 0 0 53 -4,-1.8 4,-0.9 1,-0.2 3,-0.3 0.912 110.7 44.3 -56.7 -44.8 -5.5 -5.4 4.3 93 217 A Q H X S+ 0 0 8 -4,-1.5 4,-2.1 1,-0.2 5,-0.3 0.776 103.1 67.8 -71.2 -26.6 -7.6 -2.2 4.2 94 218 A Y H X S+ 0 0 26 -4,-1.4 4,-1.8 1,-0.2 -1,-0.2 0.907 102.8 44.2 -59.3 -42.6 -9.9 -3.8 1.7 95 219 A E H X S+ 0 0 130 -4,-1.6 4,-1.5 -3,-0.3 -1,-0.2 0.787 108.6 59.7 -72.2 -27.6 -11.1 -6.2 4.4 96 220 A R H X S+ 0 0 132 -4,-0.9 4,-0.6 -5,-0.2 -2,-0.2 0.892 113.9 35.1 -66.9 -40.7 -11.3 -3.3 6.8 97 221 A E H X S+ 0 0 50 -4,-2.1 4,-1.7 2,-0.2 -2,-0.2 0.744 113.5 59.8 -84.1 -26.1 -13.8 -1.5 4.6 98 222 A S H X S+ 0 0 17 -4,-1.8 4,-2.1 -5,-0.3 -2,-0.2 0.788 100.8 55.9 -71.9 -27.8 -15.5 -4.7 3.5 99 223 A Q H X S+ 0 0 136 -4,-1.5 4,-1.0 2,-0.2 -1,-0.2 0.829 112.6 41.2 -72.6 -32.6 -16.3 -5.5 7.1 100 224 A A H X S+ 0 0 47 -4,-0.6 4,-0.6 2,-0.2 -2,-0.2 0.750 116.0 50.1 -85.0 -27.1 -18.2 -2.1 7.4 101 225 A Y H X S+ 0 0 111 -4,-1.7 4,-0.5 2,-0.2 -2,-0.2 0.845 112.0 46.7 -78.8 -36.2 -19.8 -2.5 4.0 102 226 A Y H < S+ 0 0 162 -4,-2.1 3,-0.5 1,-0.2 -2,-0.2 0.844 115.5 45.5 -73.9 -34.7 -21.0 -6.0 4.6 103 227 A Q H < S+ 0 0 147 -4,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.668 96.5 76.7 -81.1 -17.8 -22.4 -5.0 8.1 104 228 A R H < S- 0 0 164 -4,-0.6 -1,-0.2 1,-0.2 -2,-0.2 0.824 88.4-159.1 -61.2 -31.9 -24.0 -1.9 6.6 105 229 A G < - 0 0 53 -4,-0.5 2,-1.0 -3,-0.5 -1,-0.2 -0.481 42.4 -24.8 86.4-158.4 -26.7 -4.0 5.1 106 230 A S 0 0 133 -2,-0.2 -1,-0.1 -3,-0.1 -4,-0.0 -0.786 360.0 360.0 -97.8 96.1 -28.9 -3.1 2.2 107 231 A S 0 0 144 -2,-1.0 -2,-0.0 0, 0.0 -3,-0.0 -0.987 360.0 360.0-137.8 360.0 -29.0 0.7 2.0