==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN, ONCOPROTEIN 04-JAN-06 2FK4 . COMPND 2 MOLECULE: PROTEIN E6; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; . AUTHOR Y.NOMINE,S.CHARBONNIER . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5287.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 58.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 34 0, 0.0 49,-0.3 0, 0.0 50,-0.1 0.000 360.0 360.0 360.0-120.3 54.7 -1.8 -8.4 2 2 A M + 0 0 187 1,-0.2 3,-0.2 47,-0.1 49,-0.1 0.913 360.0 52.6 -58.4 -39.4 52.9 -2.0 -11.7 3 3 A S S S- 0 0 63 1,-0.3 2,-0.3 47,-0.2 -1,-0.2 0.984 136.4 -27.3 -61.3 -48.7 50.0 -4.0 -10.2 4 4 A Y E +A 50 0A 54 46,-1.5 46,-2.9 2,-0.0 2,-0.3 -0.988 68.8 168.6-159.9 151.8 49.6 -1.3 -7.6 5 5 A S E -A 49 0A 39 -2,-0.3 2,-0.7 44,-0.3 44,-0.2 -0.983 30.9-128.5-162.7 154.9 51.8 1.3 -5.8 6 6 A L E -A 48 0A 2 42,-0.9 42,-0.9 -2,-0.3 39,-0.1 -0.872 17.8-176.2-110.5 106.8 51.7 4.4 -3.5 7 7 A Y - 0 0 132 -2,-0.7 2,-0.3 40,-0.2 -1,-0.2 0.912 66.4 -42.6 -65.9 -40.8 53.7 7.3 -5.0 8 8 A G S > S- 0 0 5 36,-0.2 4,-1.6 39,-0.1 3,-0.4 -0.898 84.2 -50.3-166.5-166.4 53.0 9.5 -1.9 9 9 A T H > S+ 0 0 59 34,-0.6 4,-0.9 -2,-0.3 7,-0.1 0.860 122.2 64.1 -55.7 -38.7 50.4 10.6 0.6 10 10 A T H >4 S+ 0 0 105 1,-0.2 3,-1.1 2,-0.2 4,-0.3 0.960 108.2 41.2 -56.0 -45.0 47.8 11.5 -2.1 11 11 A L H >> S+ 0 0 76 -3,-0.4 3,-1.6 1,-0.2 4,-0.8 0.853 102.0 73.3 -68.1 -30.8 47.6 7.8 -3.1 12 12 A E H 3X S+ 0 0 10 -4,-1.6 4,-3.4 1,-0.3 -1,-0.2 0.771 75.8 81.8 -52.8 -27.3 47.7 6.9 0.6 13 13 A Q H S+ 0 0 36 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 -0.090 81.6 132.3-105.9 31.3 42.2 0.2 5.8 19 19 A L T < S+ 0 0 26 -4,-0.8 5,-0.1 -3,-0.4 -3,-0.1 0.923 76.0 52.8 -53.7 -41.0 46.0 0.5 5.7 20 20 A S T 4 S+ 0 0 124 -3,-0.2 -1,-0.2 1,-0.2 4,-0.1 0.943 108.7 50.6 -60.3 -40.3 46.2 -2.1 8.6 21 21 A D T 4 S+ 0 0 134 -3,-0.2 -1,-0.2 -6,-0.1 -2,-0.2 0.882 102.8 73.0 -61.8 -37.1 44.0 -4.4 6.5 22 22 A L S < S- 0 0 47 -4,-2.3 2,-0.7 -7,-0.2 -7,-0.0 -0.499 92.1-118.8 -79.1 147.0 46.4 -3.8 3.5 23 23 A L + 0 0 66 -2,-0.2 2,-0.4 31,-0.0 -3,-0.1 -0.784 34.7 170.8 -96.6 121.1 49.7 -5.5 3.8 24 24 A I + 0 0 12 -2,-0.7 9,-0.5 -4,-0.1 2,-0.3 -0.973 19.3 140.2-121.2 127.3 53.0 -3.5 3.9 25 25 A R - 0 0 109 -2,-0.4 34,-0.2 7,-0.1 33,-0.1 -0.995 57.7 -67.7-158.8 164.8 56.3 -5.3 4.7 26 26 A C - 0 0 12 5,-0.9 4,-0.3 -2,-0.3 29,-0.2 -0.273 43.2-130.2 -55.1 137.3 60.0 -5.6 3.8 27 27 A I S S+ 0 0 50 1,-0.1 -1,-0.2 2,-0.1 29,-0.1 0.757 100.7 5.3 -61.9 -24.5 60.3 -7.0 0.3 28 28 A N S S+ 0 0 82 3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.636 126.6 56.2-130.4 -43.2 62.8 -9.5 1.6 29 29 A C S S- 0 0 37 1,-0.1 -2,-0.1 2,-0.1 -3,-0.0 0.890 77.4-161.8 -64.5 -33.2 63.2 -9.3 5.4 30 30 A Q + 0 0 80 -4,-0.3 -1,-0.1 1,-0.2 -3,-0.1 0.889 38.2 140.4 53.3 41.3 59.5 -9.9 5.7 31 31 A K - 0 0 136 1,-0.1 -5,-0.9 0, 0.0 -1,-0.2 -0.727 67.6 -75.6-106.8 161.7 59.6 -8.6 9.3 32 32 A P - 0 0 121 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 -0.250 50.4-134.6 -53.9 137.9 56.9 -6.4 10.7 33 33 A L - 0 0 18 -9,-0.5 -9,-0.1 -3,-0.1 5,-0.0 -0.868 15.0-122.3-102.8 125.1 57.3 -2.9 9.3 34 34 A S >> - 0 0 47 -2,-0.6 3,-1.8 1,-0.2 4,-1.6 -0.469 15.2-137.8 -63.7 124.3 57.0 -0.1 11.8 35 35 A P H 3> S+ 0 0 84 0, 0.0 4,-3.4 0, 0.0 -1,-0.2 0.730 103.0 72.9 -59.1 -14.3 54.2 2.1 10.5 36 36 A E H 3> S+ 0 0 142 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.939 100.1 43.3 -65.5 -39.2 56.6 4.9 11.5 37 37 A E H <> S+ 0 0 58 -3,-1.8 4,-2.1 2,-0.2 -1,-0.2 0.915 113.8 50.9 -69.8 -40.6 58.6 3.9 8.5 38 38 A K H X S+ 0 0 25 -4,-1.6 4,-4.0 1,-0.2 5,-0.3 0.909 103.9 59.4 -64.2 -39.1 55.5 3.5 6.4 39 39 A Q H X S+ 0 0 78 -4,-3.4 4,-3.2 1,-0.2 -1,-0.2 0.951 106.5 45.7 -58.9 -43.2 54.4 6.9 7.5 40 40 A R H X S+ 0 0 181 -4,-1.6 4,-2.0 2,-0.2 -1,-0.2 0.930 113.5 51.4 -63.6 -38.1 57.5 8.5 6.0 41 41 A H H X S+ 0 0 10 -4,-2.1 4,-1.8 1,-0.2 -2,-0.2 0.966 114.5 42.3 -61.1 -48.4 56.8 6.3 2.9 42 42 A L H < S+ 0 0 3 -4,-4.0 -1,-0.2 1,-0.2 -30,-0.2 0.850 105.8 64.4 -65.7 -35.2 53.2 7.6 2.8 43 43 A D H < S- 0 0 82 -4,-3.2 -34,-0.6 -5,-0.3 -1,-0.2 0.939 137.4 -42.9 -58.8 -41.6 54.4 11.2 3.5 44 44 A K H < - 0 0 148 -4,-2.0 2,-0.3 -36,-0.2 -2,-0.2 -0.051 67.2-178.6 173.9 71.3 56.3 11.2 0.2 45 45 A K < - 0 0 43 -4,-1.8 3,-0.3 1,-0.2 -4,-0.1 -0.606 34.4-129.7 -81.7 141.1 58.3 8.2 -0.9 46 46 A Q S S- 0 0 149 -2,-0.3 2,-0.3 1,-0.3 -1,-0.2 0.952 95.8 -9.7 -53.7 -42.1 60.2 8.5 -4.2 47 47 A R - 0 0 148 -3,-0.1 2,-0.5 2,-0.0 -1,-0.3 -0.800 61.9-177.3-159.0 116.6 58.5 5.2 -5.0 48 48 A F E -A 6 0A 4 -42,-0.9 -42,-0.9 -3,-0.3 2,-0.4 -0.934 23.4-158.8-110.0 128.9 56.5 2.8 -2.8 49 49 A H E -AB 5 56A 48 7,-1.5 7,-2.6 -2,-0.5 2,-0.5 -0.918 12.3-154.9-120.5 141.7 55.5 -0.4 -4.8 50 50 A N E -AB 4 55A 24 -46,-2.9 -46,-1.5 -2,-0.4 2,-0.4 -0.919 10.8-177.3-111.9 123.4 52.7 -3.0 -4.3 51 51 A I E > - B 0 54A 61 3,-2.3 3,-1.6 -2,-0.5 -2,-0.0 -0.908 43.0 -94.2-114.2 139.4 53.1 -6.5 -5.7 52 52 A R T 3 S- 0 0 194 -2,-0.4 2,-0.1 1,-0.3 -1,-0.0 -0.242 111.3 -0.4 -53.4 141.3 50.2 -9.0 -5.2 53 53 A G T 3 S+ 0 0 86 1,-0.0 2,-0.4 -3,-0.0 -1,-0.3 0.307 133.3 69.9 63.4 -18.6 50.8 -11.1 -2.1 54 54 A R E < -B 51 0A 120 -3,-1.6 -3,-2.3 -2,-0.1 2,-0.3 -0.987 63.5-163.4-134.1 137.5 54.1 -9.1 -1.7 55 55 A W E -B 50 0A 6 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.883 12.1-172.3-115.4 147.2 54.7 -5.4 -0.8 56 56 A T E +B 49 0A 12 -7,-2.6 -7,-1.5 -2,-0.3 2,-0.1 -0.956 35.8 94.0-139.3 159.8 58.0 -3.5 -1.3 57 57 A G S >> S+ 0 0 1 -2,-0.3 3,-1.3 -9,-0.2 4,-0.7 -0.562 84.6 42.6 162.7 -88.3 59.6 -0.2 -0.4 58 58 A R H >> S+ 0 0 50 1,-0.3 3,-1.3 2,-0.2 4,-1.2 0.854 103.6 66.7 -54.8 -38.5 61.8 -0.0 2.7 59 59 A C H >> S+ 0 0 0 1,-0.3 4,-1.2 2,-0.2 3,-0.7 0.894 89.6 65.9 -57.1 -30.0 63.5 -3.3 2.0 60 60 A M H X4 S+ 0 0 107 -3,-1.3 3,-0.9 1,-0.3 -1,-0.3 0.934 98.9 53.4 -55.7 -37.3 65.0 -1.6 -1.0 61 61 A S H << S+ 0 0 69 -3,-1.3 -1,-0.3 -4,-0.7 -2,-0.2 0.845 96.5 66.6 -65.0 -29.6 66.8 0.5 1.6 62 62 A C H << S+ 0 0 70 -4,-1.2 2,-0.3 -3,-0.7 -1,-0.3 0.855 112.3 33.6 -61.0 -29.6 68.0 -2.7 3.2 63 63 A S S << S- 0 0 71 -4,-1.2 2,-0.3 -3,-0.9 -1,-0.0 -0.908 75.5-151.1-125.0 154.5 70.1 -3.2 0.0 64 64 A R - 0 0 207 -2,-0.3 2,-0.4 2,-0.0 -3,-0.1 -0.927 4.6-150.4-124.8 150.3 71.8 -0.7 -2.3 65 65 A S - 0 0 113 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.902 7.6-152.1-118.9 148.0 72.6 -0.9 -6.0 66 66 A S 0 0 115 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.905 360.0 360.0-119.5 148.1 75.5 0.8 -7.8 67 67 A R 0 0 293 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.791 360.0 360.0 -90.0 360.0 75.7 1.9 -11.5