==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 26-JAN-06 2FUI . COMPND 2 MOLECULE: BROMODOMAIN PHD FINGER TRANSCRIPTION FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.ILIN,D.J.PATEL . 62 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4951.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 22 35.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 73.7 12.4 19.7 20.7 2 2 A P - 0 0 124 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.134 360.0-118.8 -53.6 148.0 10.5 20.3 17.4 3 3 A L - 0 0 182 1,-0.1 2,-0.1 0, 0.0 0, 0.0 0.855 52.1-148.7 -58.1 -35.0 6.8 21.2 17.7 4 4 A G - 0 0 65 2,-0.0 2,-0.3 1,-0.0 -1,-0.1 -0.182 2.1-109.8 88.7 174.7 6.0 18.1 15.7 5 5 A S - 0 0 115 -3,-0.1 -1,-0.0 -2,-0.1 0, 0.0 -0.998 23.3-105.0-147.9 146.8 3.1 17.4 13.3 6 6 A D - 0 0 154 -2,-0.3 -2,-0.0 1,-0.1 2,-0.0 -0.247 43.0-107.7 -66.3 157.4 -0.1 15.3 13.3 7 7 A T - 0 0 136 1,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.218 30.7-141.7 -81.1 174.9 -0.1 12.1 11.2 8 8 A K - 0 0 130 1,-0.3 -1,-0.1 7,-0.0 7,-0.0 -0.720 28.6 -71.0-128.7 179.9 -2.0 11.6 7.9 9 9 A L - 0 0 39 -2,-0.2 -1,-0.3 1,-0.1 5,-0.1 0.031 39.5-131.1 -63.0 176.6 -4.0 9.0 6.1 10 10 A Y S S+ 0 0 86 5,-0.5 4,-0.2 21,-0.1 23,-0.2 0.871 77.5 82.6 -97.8 -72.8 -2.2 5.9 4.6 11 11 A a B >> S-A 15 0A 0 4,-0.7 4,-1.2 21,-0.3 3,-0.6 -0.080 76.8-134.9 -39.0 112.0 -3.2 5.3 0.9 12 12 A I T 34 S+ 0 0 67 1,-0.3 -1,-0.2 2,-0.2 21,-0.1 0.621 100.0 85.0 -48.0 -8.9 -1.1 7.7 -1.1 13 13 A a T 34 S- 0 0 25 2,-0.2 -1,-0.3 21,-0.1 -2,-0.1 -0.030 116.6-105.7 -86.0 30.5 -4.4 8.2 -2.7 14 14 A K T <4 S+ 0 0 174 -3,-0.6 -2,-0.2 -4,-0.2 -3,-0.1 0.909 85.2 115.6 43.4 58.9 -5.2 10.8 0.1 15 15 A T B < -A 11 0A 52 -4,-1.2 -4,-0.7 19,-0.0 -5,-0.5 -0.912 63.9-118.1-156.3 124.3 -7.6 8.5 1.9 16 16 A P - 0 0 79 0, 0.0 -7,-0.1 0, 0.0 -3,-0.0 -0.024 50.1 -72.6 -57.2 164.2 -7.4 6.9 5.4 17 17 A Y - 0 0 87 16,-0.0 2,-0.4 1,-0.0 5,-0.1 -0.251 47.5-166.3 -60.2 145.8 -7.3 3.2 6.0 18 18 A D > - 0 0 69 3,-0.2 3,-2.4 -3,-0.1 -1,-0.0 -0.917 22.5-153.5-141.5 111.8 -10.5 1.2 5.5 19 19 A E T 3 S+ 0 0 185 -2,-0.4 -1,-0.1 1,-0.3 4,-0.1 0.763 104.1 61.3 -53.5 -22.5 -11.0 -2.4 6.6 20 20 A S T 3 S+ 0 0 128 -3,-0.1 -1,-0.3 2,-0.1 2,-0.3 0.832 106.2 55.4 -71.1 -30.4 -13.4 -2.5 3.7 21 21 A K S < S- 0 0 78 -3,-2.4 2,-0.3 13,-0.0 -3,-0.2 -0.712 87.3-133.4-100.3 149.4 -10.4 -1.8 1.6 22 22 A F - 0 0 76 -2,-0.3 13,-1.1 -5,-0.1 2,-0.3 -0.785 19.9-156.2-108.6 151.7 -7.4 -3.9 1.7 23 23 A Y E -B 34 0B 25 -2,-0.3 2,-0.5 11,-0.2 11,-0.2 -0.845 18.0-144.8-126.9 165.4 -3.8 -2.8 1.9 24 24 A I E -B 33 0B 3 9,-0.9 9,-0.9 -2,-0.3 2,-0.5 -0.997 32.9-128.3-126.5 118.7 -0.3 -3.8 1.1 25 25 A G E -B 32 0B 25 -2,-0.5 7,-0.2 7,-0.2 2,-0.2 -0.644 20.5-111.9 -83.3 127.0 2.2 -2.5 3.7 26 26 A b > - 0 0 4 5,-3.0 4,-1.3 -2,-0.5 26,-0.2 -0.259 24.8-147.2 -48.2 107.3 5.3 -0.6 2.6 27 27 A D T 4 S+ 0 0 94 24,-0.5 -1,-0.2 1,-0.2 25,-0.1 0.868 98.6 13.9 -51.1 -37.3 7.9 -3.2 3.5 28 28 A R T 4 S+ 0 0 132 25,-0.1 -1,-0.2 1,-0.1 -2,-0.1 0.551 127.6 56.5-114.3 -14.6 10.2 -0.3 4.3 29 29 A b T 4 S- 0 0 21 2,-0.1 -3,-0.2 -4,-0.0 -2,-0.2 0.264 89.8-140.7-102.9 14.2 7.7 2.6 4.4 30 30 A Q < + 0 0 145 -4,-1.3 2,-0.3 -5,-0.1 -3,-0.1 0.783 60.5 121.8 30.4 48.5 5.5 1.0 7.1 31 31 A N - 0 0 30 -5,-0.1 -5,-3.0 -7,-0.1 2,-0.4 -0.860 52.7-141.2-132.1 166.1 2.4 2.3 5.3 32 32 A W E +B 25 0B 89 -2,-0.3 2,-0.4 -7,-0.2 -21,-0.3 -0.992 16.9 178.0-134.6 131.0 -0.7 0.8 3.8 33 33 A Y E -B 24 0B 0 -9,-0.9 -9,-0.9 -2,-0.4 5,-0.1 -0.978 40.7 -96.5-130.2 145.0 -2.6 1.8 0.6 34 34 A H E > -B 23 0B 5 -2,-0.4 4,-1.0 -19,-0.2 3,-0.5 -0.242 47.0-109.7 -52.0 143.0 -5.7 0.3 -1.1 35 35 A G T >4>S+ 0 0 1 -13,-1.1 5,-1.6 1,-0.3 3,-1.5 0.926 122.3 34.6 -42.2 -60.3 -4.4 -2.0 -3.8 36 36 A R G >45S+ 0 0 168 1,-0.3 3,-0.7 3,-0.3 -1,-0.3 0.709 97.6 86.3 -69.2 -18.2 -5.5 0.3 -6.6 37 37 A C G 345S+ 0 0 12 -3,-0.5 -1,-0.3 1,-0.3 -2,-0.2 0.838 109.0 23.1 -50.1 -30.7 -4.7 3.2 -4.3 38 38 A V G <<5S- 0 0 39 -3,-1.5 -1,-0.3 -4,-1.0 -2,-0.2 0.326 125.7 -96.1-116.8 4.2 -1.2 2.7 -5.8 39 39 A G T < 5S+ 0 0 69 -3,-0.7 -3,-0.3 -4,-0.3 2,-0.3 0.915 76.9 140.2 82.7 46.1 -2.2 1.0 -9.0 40 40 A I < - 0 0 32 -5,-1.6 -1,-0.2 -6,-0.2 5,-0.0 -0.753 54.3 -89.4-119.2 167.7 -1.7 -2.6 -7.9 41 41 A L - 0 0 112 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 -0.196 25.2-130.7 -68.7 164.5 -3.5 -5.9 -8.4 42 42 A Q S > S+ 0 0 156 2,-0.2 3,-1.6 1,-0.1 4,-0.5 0.893 113.9 47.7 -80.6 -44.0 -6.2 -7.1 -6.0 43 43 A S G >> S+ 0 0 53 1,-0.3 3,-2.1 2,-0.2 4,-1.7 0.915 93.1 75.8 -62.8 -41.1 -4.5 -10.4 -5.7 44 44 A E G 34 S+ 0 0 58 1,-0.3 -1,-0.3 2,-0.2 -2,-0.2 0.721 93.4 59.8 -43.6 -16.3 -1.3 -8.5 -5.1 45 45 A A G <4 S+ 0 0 23 -3,-1.6 -1,-0.3 2,-0.1 -2,-0.2 0.889 116.9 24.5 -78.9 -44.5 -3.0 -8.1 -1.8 46 46 A E T <4 S+ 0 0 167 -3,-2.1 -2,-0.2 -4,-0.5 -3,-0.1 0.910 122.0 48.8 -87.9 -51.9 -3.3 -11.9 -1.0 47 47 A L S < S+ 0 0 97 -4,-1.7 2,-0.4 2,-0.0 -1,-0.2 0.150 97.7 105.0 -76.7 20.4 -0.5 -13.6 -3.0 48 48 A I + 0 0 37 -5,-0.4 -3,-0.0 -3,-0.2 -4,-0.0 -0.845 22.8 140.4-110.4 143.4 1.7 -11.0 -1.6 49 49 A D S S+ 0 0 154 -2,-0.4 -1,-0.1 -25,-0.0 -4,-0.1 0.050 82.6 39.9-166.0 29.1 4.3 -11.2 1.2 50 50 A E S S+ 0 0 158 2,-0.0 -23,-0.1 -25,-0.0 2,-0.1 0.166 77.2 140.1-166.3 11.4 7.2 -9.1 -0.0 51 51 A Y - 0 0 26 -7,-0.1 -24,-0.5 -6,-0.1 2,-0.3 -0.359 34.4-156.1 -67.1 146.9 5.3 -6.1 -1.6 52 52 A V - 0 0 41 -26,-0.2 -26,-0.2 -25,-0.1 -1,-0.0 -0.877 17.7-105.6-125.2 157.0 6.8 -2.7 -1.0 53 53 A c > - 0 0 0 -2,-0.3 4,-1.2 1,-0.1 -25,-0.1 -0.381 19.4-130.5 -78.6 157.2 5.3 0.7 -1.0 54 54 A P H > S+ 0 0 41 0, 0.0 4,-0.8 0, 0.0 -1,-0.1 0.818 110.7 52.6 -77.8 -30.1 5.9 3.1 -3.9 55 55 A Q H > S+ 0 0 70 1,-0.2 4,-0.9 2,-0.2 3,-0.2 0.815 104.6 60.0 -72.3 -29.6 6.9 5.9 -1.5 56 56 A c H >> S+ 0 0 0 1,-0.2 4,-3.4 2,-0.2 3,-1.1 0.905 94.2 61.2 -62.8 -45.4 9.3 3.4 -0.0 57 57 A Q H 3X S+ 0 0 126 -4,-1.2 4,-1.2 1,-0.3 -1,-0.2 0.860 98.3 58.6 -52.6 -36.7 11.2 3.0 -3.3 58 58 A S H 3< S+ 0 0 98 -4,-0.8 -1,-0.3 -3,-0.2 -2,-0.2 0.882 114.8 36.5 -60.4 -37.0 12.0 6.7 -3.2 59 59 A T H << S+ 0 0 77 -3,-1.1 -2,-0.2 -4,-0.9 -1,-0.2 0.822 101.3 77.4 -83.8 -34.9 13.7 6.0 0.1 60 60 A E H < S- 0 0 98 -4,-3.4 2,-0.3 1,-0.1 -2,-0.2 0.910 113.4 -33.8 -38.3 -68.3 15.1 2.6 -0.9 61 61 A D < 0 0 122 -4,-1.2 -1,-0.1 0, 0.0 0, 0.0 -0.950 360.0 360.0-152.6 170.1 17.9 4.0 -3.0 62 62 A A 0 0 171 -2,-0.3 -4,-0.0 -3,-0.1 -3,-0.0 -0.920 360.0 360.0-109.7 360.0 18.9 6.9 -5.3