==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 02-OCT-00 1FYK . COMPND 2 MOLECULE: HSE DNA-PHOSPHATE BACKBONE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR O.LITTLEFIELD,H.C.M.NELSON . 88 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6570.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 27.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 193 A A 0 0 157 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 75.0 5.4 -3.3 10.7 2 194 A R - 0 0 165 1,-0.0 5,-0.1 2,-0.0 0, 0.0 -0.983 360.0 -89.4-126.5 141.9 7.8 -0.4 11.2 3 195 A P > - 0 0 61 0, 0.0 4,-2.1 0, 0.0 5,-0.2 -0.064 33.9-118.5 -49.8 140.0 8.2 2.8 9.1 4 196 A A H > S+ 0 0 64 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.851 114.7 54.2 -50.3 -37.6 10.5 2.7 6.2 5 197 A F H > S+ 0 0 12 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.958 105.1 52.8 -65.5 -46.5 12.7 5.4 7.7 6 198 A V H > S+ 0 0 46 1,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.935 113.2 43.8 -54.1 -47.7 13.0 3.5 11.0 7 199 A N H X S+ 0 0 74 -4,-2.1 4,-3.1 2,-0.2 5,-0.3 0.930 111.6 53.9 -63.3 -45.7 14.3 0.4 9.1 8 200 A K H X S+ 0 0 77 -4,-2.7 4,-2.8 -5,-0.2 -2,-0.2 0.932 113.0 43.2 -53.6 -49.0 16.6 2.6 6.8 9 201 A L H X S+ 0 0 12 -4,-2.9 4,-3.0 2,-0.2 5,-0.3 0.935 113.7 50.1 -62.6 -51.0 18.2 4.1 9.9 10 202 A W H X S+ 0 0 151 -4,-2.6 4,-1.7 -5,-0.3 -2,-0.2 0.935 116.1 43.5 -53.2 -48.2 18.5 0.8 11.8 11 203 A S H X S+ 0 0 60 -4,-3.1 4,-1.3 -5,-0.2 -2,-0.2 0.907 114.2 50.5 -62.6 -47.5 20.1 -0.8 8.7 12 204 A X H < S+ 0 0 0 -4,-2.8 3,-0.3 -5,-0.3 -2,-0.2 0.925 112.7 44.5 -58.3 -50.4 22.3 2.2 8.0 13 205 A V H < S+ 0 0 10 -4,-3.0 11,-0.4 1,-0.2 -1,-0.2 0.797 116.8 44.9 -67.1 -36.0 23.7 2.4 11.5 14 206 A N H < S+ 0 0 60 -4,-1.7 2,-0.8 -5,-0.3 -1,-0.2 0.613 84.6 102.3 -85.7 -16.7 24.3 -1.3 11.9 15 207 A D >< - 0 0 67 -4,-1.3 3,-2.6 -3,-0.3 4,-0.3 -0.617 65.6-147.5 -72.1 113.4 25.9 -2.0 8.5 16 208 A K G > S+ 0 0 142 -2,-0.8 3,-1.4 1,-0.3 4,-0.2 0.711 91.0 71.3 -54.7 -23.2 29.7 -2.3 9.2 17 209 A S G 3 S+ 0 0 73 1,-0.3 -1,-0.3 2,-0.1 3,-0.2 0.627 99.0 48.4 -72.2 -10.7 30.5 -0.8 5.8 18 210 A N G X> S+ 0 0 2 -3,-2.6 3,-2.5 -6,-0.2 4,-2.3 0.424 77.0 114.3-104.4 0.0 29.3 2.6 7.0 19 211 A E T <4 S+ 0 0 102 -3,-1.4 -1,-0.1 -4,-0.3 -2,-0.1 0.737 73.6 52.2 -41.6 -38.5 31.3 2.4 10.2 20 212 A K T 34 S+ 0 0 174 -4,-0.2 -1,-0.3 -3,-0.2 3,-0.1 0.713 119.4 33.2 -76.4 -18.2 33.6 5.3 9.3 21 213 A F T <4 S+ 0 0 48 -3,-2.5 14,-0.5 1,-0.4 2,-0.3 0.706 130.8 9.4-109.3 -28.7 30.8 7.7 8.4 22 214 A I S < S+ 0 0 1 -4,-2.3 -1,-0.4 11,-0.2 2,-0.3 -0.947 71.5 139.0-155.9 134.0 28.0 6.8 10.9 23 215 A H E -A 32 0A 60 9,-2.0 9,-2.8 -2,-0.3 -9,-0.1 -0.984 50.3 -78.2-167.1 165.5 28.0 4.4 13.9 24 216 A W E -A 31 0A 64 -11,-0.4 7,-0.2 -2,-0.3 3,-0.1 -0.395 52.7-104.5 -71.9 147.0 26.7 3.9 17.4 25 217 A S > - 0 0 20 5,-2.5 3,-2.7 1,-0.2 -1,-0.1 -0.441 62.2 -66.6 -69.0 148.7 28.5 5.7 20.2 26 218 A T T 3 S- 0 0 142 1,-0.3 -1,-0.2 -2,-0.1 3,-0.1 -0.109 111.9 -27.7 -40.9 104.5 30.8 3.4 22.3 27 219 A S T 3 S+ 0 0 140 1,-0.2 -1,-0.3 -3,-0.1 2,-0.2 0.833 121.8 106.4 51.6 38.5 28.4 1.0 24.1 28 220 A G S < S- 0 0 31 -3,-2.7 -1,-0.2 2,-0.2 -4,-0.0 -0.604 78.6-112.2-132.3-168.5 25.7 3.6 24.0 29 221 A E S S+ 0 0 150 -2,-0.2 56,-0.5 -3,-0.1 2,-0.4 0.002 78.2 98.5-118.7 25.2 22.4 4.7 22.4 30 222 A S - 0 0 4 54,-0.1 -5,-2.5 -5,-0.1 2,-0.6 -0.910 67.9-128.8-114.9 147.3 23.5 7.8 20.5 31 223 A I E -AB 24 83A 3 52,-2.4 52,-2.4 -2,-0.4 2,-0.5 -0.861 20.6-156.7 -99.7 117.4 24.3 8.0 16.8 32 224 A V E -AB 23 82A 7 -9,-2.8 -9,-2.0 -2,-0.6 50,-0.2 -0.843 12.8-174.8-100.9 126.9 27.6 9.6 15.9 33 225 A V E - B 0 81A 0 48,-3.1 48,-2.6 -2,-0.5 3,-0.3 -0.940 9.4-164.5-119.5 95.2 28.2 11.1 12.4 34 226 A P S S+ 0 0 31 0, 0.0 2,-0.2 0, 0.0 45,-0.1 0.672 76.1 16.2 -53.3 -28.7 31.9 12.1 12.5 35 227 A N > - 0 0 25 -14,-0.5 4,-2.3 1,-0.1 5,-0.2 -0.781 60.9-155.0-157.4 107.0 31.7 14.3 9.4 36 228 A R H > S+ 0 0 88 43,-2.6 4,-2.5 -3,-0.3 5,-0.2 0.908 95.7 51.9 -42.8 -56.2 28.4 15.7 7.9 37 229 A E H > S+ 0 0 88 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.918 111.1 43.6 -51.0 -59.3 30.0 16.1 4.4 38 230 A R H > S+ 0 0 151 1,-0.2 4,-3.3 2,-0.2 5,-0.5 0.911 113.4 53.0 -56.6 -44.6 31.4 12.5 4.0 39 231 A F H X>S+ 0 0 0 -4,-2.3 5,-2.1 1,-0.2 4,-1.9 0.927 109.8 47.9 -56.4 -49.8 28.2 11.0 5.4 40 232 A V H <5S+ 0 0 37 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.837 118.4 42.0 -60.7 -36.3 26.1 12.9 2.8 41 233 A Q H <5S+ 0 0 129 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.933 127.2 24.6 -78.0 -49.0 28.4 11.8 0.0 42 234 A E H <5S+ 0 0 114 -4,-3.3 -3,-0.2 -5,-0.2 -2,-0.2 0.824 131.4 23.6 -89.1 -35.8 29.1 8.1 0.8 43 235 A V T ><5S+ 0 0 1 -4,-1.9 3,-1.6 -5,-0.5 4,-0.5 0.883 106.4 62.7-101.3 -50.9 26.2 6.9 2.9 44 236 A L G >> - 0 0 88 -2,-0.3 4,-2.0 -8,-0.1 3,-0.4 -0.897 48.7 -92.6-140.2 166.9 19.9 15.9 1.7 53 245 A F H > S+ 0 0 7 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.870 119.7 54.9 -54.1 -46.1 21.1 16.3 5.2 54 246 A A H > S+ 0 0 46 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.894 109.5 47.1 -56.5 -43.7 18.3 18.7 6.3 55 247 A S H > S+ 0 0 39 -3,-0.4 4,-2.3 2,-0.2 -1,-0.2 0.907 111.1 52.9 -65.5 -41.1 15.6 16.3 5.2 56 248 A F H X S+ 0 0 4 -4,-2.0 4,-2.5 1,-0.2 -2,-0.2 0.950 110.5 46.0 -58.3 -52.9 17.3 13.4 7.0 57 249 A V H X S+ 0 0 21 -4,-2.7 4,-2.9 1,-0.2 -1,-0.2 0.876 108.9 56.3 -58.7 -40.9 17.5 15.4 10.3 58 250 A R H X S+ 0 0 167 -4,-2.1 4,-1.8 -5,-0.2 -1,-0.2 0.925 109.1 47.1 -57.4 -44.1 13.9 16.4 9.9 59 251 A Q H X S+ 0 0 64 -4,-2.3 4,-1.3 1,-0.2 -2,-0.2 0.932 111.5 50.7 -61.3 -48.5 13.1 12.6 9.6 60 252 A L H ><>S+ 0 0 2 -4,-2.5 5,-2.6 1,-0.2 3,-0.6 0.908 107.3 52.9 -54.6 -49.3 15.2 11.9 12.7 61 253 A N H ><5S+ 0 0 76 -4,-2.9 3,-2.1 1,-0.2 -1,-0.2 0.890 103.0 59.9 -53.2 -45.0 13.5 14.6 14.8 62 254 A X H 3<5S+ 0 0 128 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.841 105.7 47.4 -52.9 -40.4 10.1 13.0 13.8 63 255 A Y T <<5S- 0 0 72 -4,-1.3 -1,-0.3 -3,-0.6 -2,-0.2 0.272 130.0 -94.6 -89.9 18.3 11.3 9.8 15.5 64 256 A G T < 5S+ 0 0 3 -3,-2.1 22,-2.4 1,-0.3 2,-0.4 0.567 77.3 142.0 85.8 9.5 12.5 11.6 18.6 65 257 A W E < -C 85 0A 34 -5,-2.6 2,-0.3 20,-0.2 -1,-0.3 -0.712 26.6-173.3 -89.0 134.8 16.1 12.0 17.7 66 258 A H E -C 84 0A 85 18,-2.8 18,-2.7 -2,-0.4 2,-0.3 -0.960 28.8-107.2-127.1 149.0 17.8 15.3 18.7 67 259 A K E -C 83 0A 63 -2,-0.3 2,-0.3 16,-0.2 16,-0.2 -0.533 35.3-121.0 -76.2 129.1 21.2 16.8 18.1 68 260 A V - 0 0 34 14,-2.9 2,-0.5 -2,-0.3 14,-0.3 -0.590 24.1-163.4 -70.6 127.5 23.5 16.8 21.1 69 261 A Q + 0 0 154 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 -0.703 40.1 132.4-117.8 75.3 24.4 20.4 21.8 70 262 A D + 0 0 114 -2,-0.5 2,-0.7 2,-0.1 -1,-0.1 0.155 35.2 110.8-109.9 13.6 27.4 20.0 24.1 71 263 A V - 0 0 113 -3,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.822 63.2-139.7 -99.9 110.8 29.7 22.5 22.4 72 264 A K - 0 0 193 -2,-0.7 2,-2.5 1,-0.1 -2,-0.1 -0.526 29.6-117.0 -63.4 122.7 30.5 25.7 24.3 73 265 A S 0 0 134 -2,-0.3 -1,-0.1 1,-0.0 -2,-0.0 -0.427 360.0 360.0 -67.7 77.5 30.4 28.4 21.6 74 266 A G 0 0 118 -2,-2.5 -2,-0.1 0, 0.0 -1,-0.0 -0.635 360.0 360.0-168.2 360.0 34.1 29.4 22.1 75 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 76 271 A N 0 0 152 0, 0.0 4,-0.1 0, 0.0 -41,-0.0 0.000 360.0 360.0 360.0 128.8 36.3 18.0 14.7 77 272 A N > - 0 0 138 1,-0.1 3,-2.7 2,-0.1 2,-0.2 0.287 360.0 -20.9 -81.7-145.7 34.3 21.2 14.5 78 273 A D T 3 S+ 0 0 137 1,-0.3 -1,-0.1 -43,-0.1 -43,-0.1 0.406 123.0 74.2 -45.0 -3.9 30.8 21.9 13.1 79 274 A S T 3 S+ 0 0 25 -2,-0.2 -43,-2.6 -45,-0.1 2,-0.5 0.602 77.5 90.9 -87.3 -14.8 31.1 18.8 10.9 80 275 A R < + 0 0 100 -3,-2.7 2,-0.4 -45,-0.2 -45,-0.1 -0.730 54.6 180.0 -88.3 126.7 30.5 16.5 13.8 81 276 A W E -B 33 0A 37 -48,-2.6 -48,-3.1 -2,-0.5 2,-0.4 -0.975 8.4-177.6-126.6 142.9 26.9 15.5 14.6 82 277 A E E -B 32 0A 32 -2,-0.4 -14,-2.9 -14,-0.3 2,-0.4 -0.998 9.5-157.8-141.5 132.4 25.6 13.3 17.4 83 278 A F E -BC 31 67A 1 -52,-2.4 -52,-2.4 -2,-0.4 2,-0.4 -0.948 9.4-179.1-117.4 137.8 22.0 12.3 17.9 84 279 A E E - C 0 66A 96 -18,-2.7 -18,-2.8 -2,-0.4 2,-0.3 -0.969 26.3-121.5-133.1 138.4 20.3 11.1 21.1 85 280 A N E - C 0 65A 22 -56,-0.5 -20,-0.2 -2,-0.4 -21,-0.1 -0.633 8.5-135.7 -84.9 143.0 16.6 10.1 21.4 86 281 A E S S+ 0 0 112 -22,-2.4 2,-1.0 -2,-0.3 -1,-0.1 0.803 94.1 75.2 -63.5 -31.0 14.2 11.8 23.9 87 282 A R S S+ 0 0 164 -23,-0.2 2,-0.3 2,-0.0 -2,-0.1 -0.758 70.5 134.5 -87.2 101.2 12.9 8.3 24.9 88 283 A H 0 0 141 -2,-1.0 -2,-0.0 -4,-0.1 -4,-0.0 -0.903 360.0 360.0-142.0 169.5 15.7 6.9 27.1 89 284 A A 0 0 168 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.682 360.0 360.0 -81.1 360.0 16.1 5.0 30.4