==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN/RNA 07-FEB-06 2FY1 . COMPND 2 MOLECULE: RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR L.SKRISOVSKA,C.BOURGOIS,R.STEFL,L.KISTER,P.WENTER,D.ELLIOT, . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7959.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 47.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 195 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 131.3 9.1 -7.0 8.2 2 2 A V > + 0 0 69 2,-0.0 3,-1.9 4,-0.0 4,-0.1 0.149 360.0 123.9-142.6 11.4 11.2 -5.7 5.1 3 3 A E T 3 S+ 0 0 170 1,-0.3 3,-0.1 2,-0.1 0, 0.0 0.597 95.3 18.7 -63.5 -12.7 8.5 -5.9 2.3 4 4 A A T 3 S- 0 0 51 1,-0.5 -1,-0.3 89,-0.0 2,-0.1 0.129 125.0 -95.0-132.4 16.7 9.1 -2.1 1.5 5 5 A D < - 0 0 22 -3,-1.9 -1,-0.5 1,-0.1 3,-0.1 -0.167 35.3-103.5 74.5 173.7 12.5 -1.8 3.2 6 6 A H S S+ 0 0 101 1,-0.1 -1,-0.1 -4,-0.1 -3,-0.0 0.071 74.9 117.1-126.1 24.1 12.9 -0.5 6.8 7 7 A P - 0 0 58 0, 0.0 48,-0.1 0, 0.0 -1,-0.1 0.672 67.3-137.2 -70.5 -15.0 14.1 3.3 6.9 8 8 A G + 0 0 5 1,-0.2 47,-2.7 -3,-0.1 2,-0.4 0.907 55.8 142.3 57.7 44.9 10.8 4.5 8.6 9 9 A K E -A 54 0A 67 45,-0.2 74,-1.8 74,-0.2 2,-0.3 -0.972 31.4-166.5-129.3 127.1 10.9 7.4 6.2 10 10 A L E -AB 53 82A 2 43,-2.6 43,-2.3 -2,-0.4 2,-0.5 -0.926 13.8-138.0-135.1 138.2 7.6 8.6 4.8 11 11 A F E -AB 52 81A 50 70,-3.2 70,-2.3 -2,-0.3 2,-0.5 -0.865 10.5-168.4-104.4 126.6 6.4 11.0 2.0 12 12 A I E -AB 51 80A 0 39,-2.8 39,-2.1 -2,-0.5 2,-0.6 -0.971 12.8-154.1-114.3 126.6 3.5 13.5 2.3 13 13 A G E + B 0 79A 14 66,-2.8 66,-2.2 -2,-0.5 2,-0.3 -0.907 60.3 45.4-106.2 124.0 2.4 14.9 -0.9 14 14 A G + 0 0 32 -2,-0.6 2,-2.5 35,-0.3 35,-0.2 -0.843 36.3 143.3 157.5-104.2 0.8 18.3 -1.0 15 15 A L >> - 0 0 4 -2,-0.3 3,-3.1 1,-0.2 4,-2.3 -0.191 40.1-159.9 61.2 -35.2 2.2 21.2 0.8 16 16 A N T 34 - 0 0 52 -2,-2.5 -1,-0.2 33,-0.4 34,-0.1 0.524 57.9 -78.4 46.7 22.1 1.1 23.4 -2.1 17 17 A R T 34 S+ 0 0 176 -3,-0.2 -1,-0.3 2,-0.2 -2,-0.1 0.823 129.9 85.1 50.9 35.5 3.6 26.2 -1.1 18 18 A E T <4 S+ 0 0 85 -3,-3.1 -2,-0.2 1,-0.2 2,-0.1 0.648 79.9 44.1-130.8 -54.7 0.7 26.8 1.4 19 19 A T < - 0 0 33 -4,-2.3 -1,-0.2 30,-0.1 2,-0.2 -0.458 67.2-170.1-104.5 176.2 1.2 24.6 4.5 20 20 A N >> - 0 0 95 -2,-0.1 4,-2.0 -3,-0.1 3,-0.7 -0.685 44.6 -47.5-147.2-172.8 4.4 23.7 6.6 21 21 A E H 3> S+ 0 0 125 1,-0.2 4,-2.4 2,-0.2 5,-0.3 0.782 123.7 65.2 -41.7 -32.4 6.5 21.9 9.2 22 22 A K H 3> S+ 0 0 176 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.973 105.0 39.9 -54.6 -62.0 3.5 22.5 11.5 23 23 A M H <> S+ 0 0 5 -3,-0.7 4,-2.9 2,-0.2 5,-0.4 0.832 110.2 62.9 -55.7 -37.3 1.3 20.3 9.3 24 24 A L H X>S+ 0 0 0 -4,-2.0 4,-2.1 1,-0.2 5,-0.7 0.992 109.8 36.7 -55.2 -63.2 4.2 17.8 9.0 25 25 A K H X5S+ 0 0 95 -4,-2.4 4,-1.2 3,-0.2 -1,-0.2 0.861 120.6 53.3 -55.1 -35.8 4.4 17.0 12.7 26 26 A A H X5S+ 0 0 46 -4,-2.2 4,-1.3 -5,-0.3 -2,-0.2 0.998 115.4 33.6 -55.1 -74.9 0.5 17.3 12.7 27 27 A V H ><5S+ 0 0 1 -4,-2.9 3,-0.6 1,-0.2 4,-0.3 0.901 129.0 36.0 -51.8 -60.9 -0.3 14.8 9.9 28 28 A F H ><5S+ 0 0 1 -4,-2.1 3,-1.4 -5,-0.4 4,-0.3 0.943 114.7 55.0 -59.7 -53.4 2.6 12.4 10.5 29 29 A G H 3<>>S+ 0 0 62 6,-0.1 4,-3.0 -2,-0.1 3,-2.9 -0.937 88.6 10.8-171.4 144.6 15.4 24.0 -4.7 43 43 A R T 345S- 0 0 158 1,-0.3 0, 0.0 2,-0.3 0, 0.0 0.540 121.1 -75.7 50.8 6.2 18.4 26.6 -4.4 44 44 A T T 345S+ 0 0 132 1,-0.1 -1,-0.3 0, 0.0 0, 0.0 0.658 130.1 12.1 67.4 13.9 17.7 26.5 -0.6 45 45 A S T <45S+ 0 0 52 -3,-2.9 -2,-0.3 0, 0.0 -1,-0.1 0.453 72.2 121.8 154.7 31.8 14.7 28.7 -1.7 46 46 A K T <5S- 0 0 153 -4,-3.0 -3,-0.2 2,-0.0 -5,-0.0 0.900 87.4-130.8 -53.1 -37.9 14.0 28.9 -5.5 47 47 A S < + 0 0 59 -5,-0.9 2,-0.2 1,-0.1 -6,-0.1 0.971 59.1 133.3 90.8 90.5 10.9 27.5 -3.6 48 48 A R - 0 0 141 -6,-0.1 2,-0.3 -8,-0.1 -6,-0.1 -0.672 40.6-123.3-129.0-175.5 8.4 24.6 -3.8 49 49 A G + 0 0 13 -2,-0.2 -33,-0.4 -35,-0.2 -35,-0.3 -0.904 35.8 148.9-138.0 114.8 7.1 22.2 -1.0 50 50 A F E - C 0 40A 69 -10,-0.9 -10,-2.8 -2,-0.3 2,-0.4 -0.975 36.2-129.1-136.8 135.8 7.2 18.3 -0.7 51 51 A A E +AC 12 39A 0 -39,-2.1 -39,-2.8 -2,-0.3 2,-0.4 -0.712 24.7 174.3-104.8 135.6 7.4 16.5 2.7 52 52 A F E -AC 11 38A 34 -14,-2.4 -14,-2.5 -2,-0.4 2,-0.4 -0.983 9.2-177.8-119.6 135.2 9.6 13.8 4.1 53 53 A I E -AC 10 37A 0 -43,-2.3 -43,-2.6 -2,-0.4 2,-0.5 -1.000 14.9-148.9-134.3 135.7 9.4 12.6 7.8 54 54 A T E -AC 9 36A 18 -18,-2.0 -18,-2.2 -2,-0.4 -19,-2.2 -0.919 15.0-152.5-104.6 133.3 11.5 10.0 9.6 55 55 A F - 0 0 8 -47,-2.7 6,-0.1 -2,-0.5 4,-0.0 -0.790 26.5-120.1-104.7 135.7 9.9 8.1 12.5 56 56 A E S S+ 0 0 131 -2,-0.3 -1,-0.1 1,-0.1 3,-0.1 0.759 105.5 23.1 -44.7 -28.1 11.7 6.5 15.5 57 57 A N S > S- 0 0 84 -49,-0.1 4,-1.3 1,-0.1 3,-0.3 -0.998 73.5-131.7-138.2 150.4 10.3 3.2 14.2 58 58 A P H > S+ 0 0 68 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.841 108.4 66.9 -64.5 -31.4 9.0 2.0 10.7 59 59 A A H > S+ 0 0 58 1,-0.2 4,-2.6 2,-0.2 5,-0.1 0.942 99.7 48.0 -44.3 -59.9 6.0 0.7 12.5 60 60 A D H > S+ 0 0 30 -3,-0.3 4,-2.9 2,-0.2 5,-0.2 0.828 107.1 55.4 -58.1 -37.6 5.0 4.3 13.3 61 61 A A H X S+ 0 0 4 -4,-1.3 4,-2.6 2,-0.2 -1,-0.2 0.952 110.7 46.1 -55.5 -51.9 5.5 5.3 9.7 62 62 A K H X S+ 0 0 143 -4,-2.5 4,-3.2 2,-0.2 -2,-0.2 0.890 112.4 52.4 -55.8 -45.1 3.1 2.6 8.6 63 63 A N H X S+ 0 0 54 -4,-2.6 4,-2.8 2,-0.2 5,-0.2 0.975 110.4 44.5 -55.4 -61.0 0.7 3.7 11.4 64 64 A A H X S+ 0 0 1 -4,-2.9 4,-2.5 -33,-0.3 5,-0.3 0.858 116.1 50.6 -55.3 -37.7 0.7 7.4 10.3 65 65 A A H < S+ 0 0 20 -4,-2.6 4,-0.4 -5,-0.2 -2,-0.2 0.992 110.4 46.5 -55.4 -62.4 0.3 6.1 6.7 66 66 A K H < S+ 0 0 154 -4,-3.2 -2,-0.2 1,-0.3 -3,-0.2 0.832 118.2 45.3 -55.3 -41.4 -2.7 3.8 7.5 67 67 A D H < S+ 0 0 54 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.2 0.963 124.7 27.9 -55.2 -63.6 -4.3 6.6 9.5 68 68 A M < + 0 0 4 -4,-2.5 -3,-0.2 -5,-0.2 -2,-0.1 0.993 69.8 130.3 -75.1 -84.2 -3.7 9.4 7.0 69 69 A N S S- 0 0 95 -4,-0.4 10,-0.1 -5,-0.3 -4,-0.1 0.665 93.7 -2.1 37.5 48.4 -3.6 8.1 3.4 70 70 A G S S+ 0 0 57 8,-0.7 -1,-0.2 1,-0.2 9,-0.1 0.702 91.7 134.4 107.8 32.6 -6.1 10.6 1.7 71 71 A K - 0 0 105 7,-0.3 7,-2.5 5,-0.0 2,-0.4 -0.328 48.0-128.6 -89.1-176.6 -7.4 12.8 4.5 72 72 A S B +D 77 0B 84 5,-0.3 5,-0.3 -2,-0.1 7,-0.0 -0.989 43.4 140.3-151.1 126.6 -7.6 16.5 3.9 73 73 A L + 0 0 70 3,-1.7 4,-0.1 -2,-0.4 -1,-0.1 0.451 64.4 55.5-157.0 2.3 -6.2 19.4 6.0 74 74 A H S S- 0 0 17 2,-1.3 3,-0.1 -55,-0.1 -55,-0.0 -0.126 125.5 -76.7-125.2 34.7 -4.7 22.4 4.1 75 75 A G S S+ 0 0 76 1,-0.3 2,-0.3 0, 0.0 -3,-0.0 0.673 122.4 62.5 71.6 16.9 -7.7 23.2 1.9 76 76 A K S S- 0 0 86 -61,-0.0 -3,-1.7 0, 0.0 -2,-1.3 -0.953 93.2 -93.3-156.3 163.8 -6.5 20.1 -0.1 77 77 A A B -D 72 0B 62 -2,-0.3 2,-0.4 -5,-0.3 -5,-0.3 -0.559 32.3-133.7 -78.0 153.7 -6.0 16.4 0.5 78 78 A I - 0 0 3 -7,-2.5 -8,-0.7 -2,-0.2 2,-0.4 -0.856 9.2-147.8-104.5 139.4 -2.8 14.9 1.6 79 79 A K E -B 13 0A 96 -66,-2.2 -66,-2.8 -2,-0.4 2,-0.5 -0.933 12.4-160.3-104.6 134.6 -1.3 11.8 -0.1 80 80 A V E +B 12 0A 21 -2,-0.4 2,-0.3 -68,-0.2 -68,-0.2 -0.975 20.4 156.5-124.8 116.9 0.8 9.5 2.2 81 81 A E E -B 11 0A 115 -70,-2.3 -70,-3.2 -2,-0.5 2,-0.4 -0.925 48.4 -99.0-135.4 154.7 3.3 7.0 0.7 82 82 A Q E -B 10 0A 53 -2,-0.3 -72,-0.2 -72,-0.2 2,-0.0 -0.683 54.0-110.1 -82.0 126.4 6.4 5.2 2.1 83 83 A A - 0 0 13 -74,-1.8 2,-0.3 -2,-0.4 -74,-0.2 -0.283 33.8-165.1 -69.5 145.1 9.4 7.2 0.8 84 84 A K - 0 0 102 1,-0.1 9,-0.1 9,-0.0 -1,-0.0 -0.912 35.0 -76.9-131.8 151.5 11.8 5.8 -1.9 85 85 A K - 0 0 126 -2,-0.3 -1,-0.1 1,-0.1 4,-0.1 -0.057 37.2-125.6 -52.1 144.9 15.3 6.9 -3.1 86 86 A P S S+ 0 0 133 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.596 91.0 30.2 -71.8 -11.2 15.4 10.0 -5.4 87 87 A S S S- 0 0 93 1,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.943 93.8 -86.7-142.1 159.3 17.4 8.1 -8.1 88 88 A F + 0 0 174 -2,-0.3 6,-0.1 1,-0.1 -1,-0.0 -0.218 44.1 152.2 -62.9 155.5 17.7 4.5 -9.5 89 89 A Q S S- 0 0 85 4,-0.1 -1,-0.1 -4,-0.1 5,-0.1 0.378 80.4 -30.8-149.0 -40.8 20.1 1.8 -8.0 90 90 A S S S- 0 0 56 3,-0.2 4,-0.1 6,-0.0 -2,-0.1 0.382 97.9 -74.8-154.6 -45.3 18.6 -1.7 -8.6 91 91 A G S S- 0 0 37 2,-0.9 2,-0.7 0, 0.0 -3,-0.0 0.095 99.1 -4.6 136.6 114.9 14.7 -1.6 -8.6 92 92 A G S S+ 0 0 67 2,-0.0 2,-0.3 -2,-0.0 -4,-0.0 -0.027 130.3 39.4 73.6 -28.9 12.1 -1.3 -5.7 93 93 A R S S- 0 0 86 -2,-0.7 -2,-0.9 1,-0.1 -3,-0.2 -0.988 76.1-127.4-144.5 152.3 15.0 -1.4 -3.2 94 94 A R + 0 0 87 -2,-0.3 -1,-0.1 -4,-0.1 -2,-0.0 0.826 36.2 178.6 -54.4 -43.2 18.6 -0.1 -2.8 95 95 A R - 0 0 132 1,-0.1 -2,-0.0 -5,-0.1 -1,-0.0 0.786 22.1-149.6 24.0 62.8 20.0 -3.7 -2.0 96 96 A P - 0 0 82 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.107 11.9-108.6 -53.9 149.3 23.7 -2.5 -1.7 97 97 A P - 0 0 113 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.266 41.2 -85.1 -72.8 162.5 26.6 -4.8 -2.6 98 98 A A + 0 0 107 -2,-0.0 2,-0.3 2,-0.0 0, 0.0 -0.377 57.5 154.4 -65.6 145.0 29.1 -6.5 -0.1 99 99 A S + 0 0 113 -2,-0.1 0, 0.0 1,-0.1 0, 0.0 -0.963 22.0 160.5-159.8 168.9 32.1 -4.5 1.1 100 100 A S S S- 0 0 125 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.200 83.3 -4.0-156.2 -56.0 34.7 -4.1 4.0 101 101 A R S S+ 0 0 178 3,-0.0 3,-0.1 2,-0.0 -2,-0.0 -0.065 76.0 156.1-148.2 33.4 38.0 -2.3 3.1 102 102 A N - 0 0 139 1,-0.2 -3,-0.0 0, 0.0 0, 0.0 -0.123 59.9 -63.1 -54.9 160.0 38.0 -1.6 -0.6 103 103 A R - 0 0 187 1,-0.1 -1,-0.2 2,-0.0 -2,-0.0 -0.227 56.7-115.4 -54.7 130.2 40.2 1.4 -1.9 104 104 A S - 0 0 57 -3,-0.1 2,-2.0 1,-0.1 -1,-0.1 -0.293 30.9-103.6 -61.9 151.3 39.3 4.9 -0.6 105 105 A P S S+ 0 0 147 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.165 94.1 79.1 -76.9 45.2 38.0 7.5 -3.2 106 106 A S + 0 0 96 -2,-2.0 2,-0.3 0, 0.0 -2,-0.1 -0.977 46.5 134.3-148.8 158.4 41.4 9.4 -3.2 107 107 A G 0 0 58 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.970 360.0 360.0 174.7 176.6 45.0 9.1 -4.7 108 108 A S 0 0 182 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.865 360.0 360.0 -56.9 360.0 47.9 10.8 -6.5