==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 05-OCT-00 1G03 . COMPND 2 MOLECULE: HTLV-I CAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-LYMPHOTROPIC VIRUS 1; . AUTHOR C.CORNILESCU,F.BOUAMR,X.YAO,C.CARTER,N.TJANDRA . 134 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8681.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 98 73.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 13.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 65 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 48 0, 0.0 12,-1.5 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 125.1 5.9 10.1 -0.2 2 2 A V E -A 12 0A 11 10,-0.2 2,-0.4 49,-0.0 10,-0.2 -0.975 360.0-142.4-156.3 138.0 6.5 11.2 3.5 3 3 A M E +A 11 0A 71 8,-1.9 8,-0.8 -2,-0.3 50,-0.0 -0.854 19.3 171.1-107.1 140.4 9.6 11.2 5.7 4 4 A H - 0 0 80 -2,-0.4 3,-0.1 6,-0.2 4,-0.0 -0.532 13.1-168.1-147.2 76.2 9.5 10.4 9.4 5 5 A P - 0 0 75 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 -0.311 47.0 -79.1 -64.4 146.3 13.0 10.1 10.9 6 6 A H S S- 0 0 194 1,-0.2 -2,-0.0 -2,-0.0 0, 0.0 -0.187 116.1 -0.5 -47.0 127.1 13.2 8.6 14.4 7 7 A G S S+ 0 0 87 1,-0.2 -1,-0.2 -3,-0.1 -3,-0.0 0.981 112.1 105.9 52.6 74.9 12.2 11.3 16.9 8 8 A A S S- 0 0 53 -3,-0.2 -1,-0.2 -4,-0.0 0, 0.0 -0.941 75.4 -71.1-163.5-178.5 11.6 14.1 14.3 9 9 A P - 0 0 95 0, 0.0 2,-1.7 0, 0.0 -6,-0.0 -0.636 51.5-106.9 -84.9 145.3 8.8 16.1 12.6 10 10 A P - 0 0 102 0, 0.0 2,-1.9 0, 0.0 -6,-0.2 -0.506 35.8-163.1 -71.5 91.5 6.7 14.3 9.9 11 11 A N E -A 3 0A 85 -2,-1.7 -8,-1.9 -8,-0.8 2,-0.0 -0.531 13.7-171.0 -78.9 86.1 8.3 16.1 6.9 12 12 A H E -A 2 0A 104 -2,-1.9 -10,-0.2 -10,-0.2 -8,-0.0 -0.352 20.4-130.0 -74.3 158.0 5.5 15.2 4.4 13 13 A R + 0 0 116 -12,-1.5 3,-0.2 1,-0.1 -1,-0.1 -0.819 38.1 159.6-114.7 92.6 6.1 15.9 0.7 14 14 A P + 0 0 64 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.787 25.6 124.6 -77.5-109.2 3.1 17.8 -0.8 15 15 A W S S+ 0 0 233 1,-0.2 -2,-0.0 2,-0.0 0, 0.0 0.224 104.2 10.7 70.1 -22.1 3.8 19.7 -4.0 16 16 A Q S > S+ 0 0 104 -3,-0.2 3,-1.4 2,-0.0 4,-0.3 0.093 72.6 143.4-174.6 40.0 0.9 17.7 -5.5 17 17 A M T >> + 0 0 79 1,-0.3 4,-1.4 2,-0.2 3,-0.5 0.606 59.6 90.8 -67.8 -4.0 -1.0 15.8 -2.7 18 18 A K H 3> S+ 0 0 154 1,-0.2 4,-0.9 2,-0.2 -1,-0.3 0.497 76.2 65.4 -70.5 3.1 -4.1 16.6 -4.8 19 19 A D H <> S+ 0 0 56 -3,-1.4 4,-1.1 2,-0.2 -1,-0.2 0.852 97.7 48.1 -94.2 -37.4 -3.5 13.2 -6.5 20 20 A L H <> S+ 0 0 37 -3,-0.5 4,-1.0 -4,-0.3 3,-0.4 0.898 109.2 57.6 -68.0 -30.8 -4.1 11.0 -3.5 21 21 A Q H >X S+ 0 0 112 -4,-1.4 4,-2.7 1,-0.3 3,-1.5 0.950 96.2 61.0 -61.6 -44.2 -7.3 13.2 -3.1 22 22 A A H 3X S+ 0 0 34 -4,-0.9 4,-1.0 1,-0.3 -1,-0.3 0.881 106.2 47.3 -49.7 -34.1 -8.3 12.1 -6.6 23 23 A I H 3X S+ 0 0 10 -4,-1.1 4,-1.1 -3,-0.4 -1,-0.3 0.722 108.4 57.8 -81.8 -16.7 -8.3 8.6 -5.1 24 24 A K H S+ 0 0 0 -2,-1.2 4,-0.9 -6,-0.5 -2,-0.2 -0.737 89.5 158.3 91.9 -96.8 -14.4 1.2 1.0 34 34 A S T >4 - 0 0 9 -2,-1.1 3,-1.0 2,-0.2 4,-0.4 0.151 66.4 -68.7 60.2 170.3 -15.5 -1.9 -1.0 35 35 A P T >> S+ 0 0 57 0, 0.0 3,-2.4 0, 0.0 4,-0.9 0.920 125.5 76.0 -60.2 -45.9 -13.3 -3.5 -3.6 36 36 A Q H 3> S+ 0 0 101 1,-0.3 4,-1.3 2,-0.2 3,-0.4 0.800 81.2 71.2 -36.2 -36.4 -13.7 -0.5 -6.0 37 37 A F H XX S+ 0 0 14 -3,-1.0 4,-2.9 -4,-0.9 3,-0.7 0.954 95.5 52.3 -48.5 -49.0 -11.3 1.4 -3.7 38 38 A M H <> S+ 0 0 42 -3,-2.4 4,-2.4 -4,-0.4 -1,-0.3 0.878 96.0 69.6 -55.2 -39.6 -8.6 -0.9 -5.1 39 39 A Q H 3X S+ 0 0 71 -4,-0.9 4,-1.5 -3,-0.4 -1,-0.2 0.932 112.4 28.7 -48.1 -50.5 -9.6 0.1 -8.6 40 40 A T H > - 0 0 43 1,-0.1 4,-1.0 -3,-0.1 3,-0.7 -0.268 42.8 -92.9 -73.7 167.1 7.9 4.2 -1.9 52 52 A A H 3> S+ 0 0 8 46,-0.3 4,-1.1 1,-0.2 -1,-0.1 0.805 121.2 79.3 -52.4 -22.0 7.0 2.5 1.3 53 53 A K H >> S+ 0 0 62 1,-0.2 3,-2.7 2,-0.2 4,-1.1 0.973 89.5 48.1 -49.9 -63.1 7.0 6.1 2.6 54 54 A D H <>>S+ 0 0 3 -3,-0.7 4,-4.1 1,-0.3 5,-0.6 0.928 102.0 63.9 -44.3 -52.7 3.6 6.9 1.2 55 55 A L H 3X5S+ 0 0 21 -4,-1.0 4,-1.2 1,-0.2 -1,-0.3 0.824 100.1 56.6 -45.6 -27.5 2.3 3.6 2.7 56 56 A Q H S+ 0 0 42 -4,-1.1 4,-0.6 -3,-0.3 5,-0.6 0.575 124.6 56.9 -91.1 -7.1 1.0 8.5 5.5 58 58 A L H <>S+ 0 0 13 -4,-4.1 5,-0.5 -5,-0.4 4,-0.4 0.794 115.8 35.1 -91.3 -29.1 -1.3 6.7 2.9 59 59 A L H < - 0 0 39 1,-0.1 4,-2.1 -2,-0.1 5,-0.4 -0.975 33.9 -75.8-161.7 172.3 -7.1 4.3 10.0 65 65 A S H > S+ 0 0 97 -2,-0.3 4,-1.8 1,-0.2 -1,-0.1 0.917 124.9 42.0 -39.8 -65.5 -5.8 2.4 13.0 66 66 A L H >> S+ 0 0 119 2,-0.2 3,-1.6 1,-0.2 4,-1.2 0.972 112.4 50.4 -50.2 -72.8 -8.1 -0.6 12.6 67 67 A V H 3> S+ 0 0 14 1,-0.3 4,-3.6 2,-0.2 5,-0.3 0.887 112.3 48.7 -34.0 -57.8 -8.0 -1.1 8.8 68 68 A A H 3X S+ 0 0 22 -4,-2.1 4,-1.5 -9,-0.3 5,-0.3 0.875 103.8 65.5 -52.8 -37.5 -4.2 -1.0 8.8 69 69 A S H S+ 0 0 40 -4,-2.9 4,-2.6 1,-0.2 5,-0.5 0.963 106.3 58.8 -54.5 -51.8 4.3 -13.2 2.3 80 80 A S H X5S+ 0 0 63 -4,-1.2 4,-0.9 -5,-0.4 -1,-0.2 0.920 120.7 27.3 -45.2 -47.9 4.5 -16.6 4.0 81 81 A E H X5S+ 0 0 132 -4,-2.6 4,-1.9 2,-0.2 -1,-0.3 0.738 114.0 64.8 -87.8 -25.0 2.5 -18.1 1.1 82 82 A A H X5S+ 0 0 14 -4,-4.0 4,-0.6 -5,-0.4 5,-0.2 0.923 112.7 35.3 -64.3 -39.0 3.7 -15.7 -1.6 83 83 A E H X5S+ 0 0 54 -4,-2.6 4,-0.6 -5,-0.3 3,-0.4 0.798 109.9 62.8 -84.8 -29.3 7.2 -16.9 -1.2 84 84 A T H < S+ 0 0 28 0, 0.0 3,-1.5 0, 0.0 8,-0.1 0.746 105.3 75.3 -91.6 -27.1 15.9 -9.8 -0.5 93 93 A L T 3 S+ 0 0 16 1,-0.3 7,-0.2 6,-0.1 6,-0.1 0.960 73.2 86.3 -46.8 -57.1 12.6 -10.3 1.5 94 94 A A T 3 S+ 0 0 97 6,-0.0 -1,-0.3 3,-0.0 3,-0.1 0.627 86.8 59.9 -7.8 -53.9 14.7 -11.7 4.3 95 95 A G S < S- 0 0 37 -3,-1.5 3,-0.0 -4,-0.1 5,-0.0 0.130 116.6 -60.9 -68.8-166.8 15.1 -8.1 5.5 96 96 A P > - 0 0 81 0, 0.0 4,-0.9 0, 0.0 -1,-0.1 -0.145 51.0-115.2 -69.4 175.9 12.1 -5.9 6.4 97 97 A L H >> S+ 0 0 60 2,-0.2 4,-1.2 1,-0.2 3,-1.2 0.973 112.8 57.7 -80.1 -59.2 9.5 -5.3 3.7 98 98 A R H 3> S+ 0 0 127 1,-0.3 4,-2.1 2,-0.2 -46,-0.3 0.796 104.9 61.0 -38.2 -27.3 9.9 -1.5 3.2 99 99 A V H 34 S+ 0 0 67 2,-0.2 -1,-0.3 1,-0.1 -2,-0.2 0.947 97.2 52.3 -71.4 -50.6 13.5 -2.5 2.5 100 100 A Q H X< S+ 0 0 6 -3,-1.2 3,-0.6 -4,-0.9 -2,-0.2 0.963 122.2 30.9 -55.2 -51.7 12.8 -4.7 -0.6 101 101 A A H 3< S+ 0 0 12 -4,-1.2 2,-2.1 1,-0.2 -1,-0.2 0.930 110.6 64.1 -77.0 -40.0 10.8 -2.0 -2.4 102 102 A N T 3< S+ 0 0 74 -4,-2.1 -1,-0.2 -5,-0.4 -2,-0.1 0.076 87.7 98.6 -70.0 37.4 12.7 0.9 -0.9 103 103 A N < - 0 0 36 -2,-2.1 7,-0.1 -3,-0.6 -1,-0.1 -0.878 57.9-166.3-128.9 101.8 15.6 -0.6 -2.8 104 104 A P S S+ 0 0 119 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.769 93.2 50.5 -57.1 -23.5 16.5 1.0 -6.3 105 105 A Q S S+ 0 0 152 1,-0.3 2,-1.6 -3,-0.1 3,-0.2 0.975 114.3 36.6 -79.3 -67.2 18.7 -2.1 -6.9 106 106 A Q + 0 0 105 1,-0.2 -1,-0.3 2,-0.1 -3,-0.2 -0.593 68.7 148.9 -86.7 83.2 16.3 -5.0 -6.0 107 107 A Q >> + 0 0 124 -2,-1.6 3,-2.9 -3,-0.3 4,-1.4 0.560 47.1 91.9 -92.1 -7.7 13.0 -3.5 -7.4 108 108 A G H >> S+ 0 0 38 1,-0.3 4,-2.2 -3,-0.2 3,-0.9 0.966 86.5 51.1 -50.0 -53.0 11.6 -7.0 -8.3 109 109 A L H 3> S+ 0 0 23 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.489 102.5 65.4 -65.9 5.3 9.9 -7.2 -4.9 110 110 A R H <> S+ 0 0 53 -3,-2.9 4,-0.7 -10,-0.2 -1,-0.2 0.828 106.3 37.8 -95.0 -35.7 8.5 -3.7 -5.8 111 111 A R H X S+ 0 0 60 -4,-2.2 4,-2.2 -5,-0.3 3,-0.7 0.955 112.1 51.5 -80.5 -52.9 5.5 -8.1 -6.7 113 113 A Y H 3X S+ 0 0 32 -4,-0.8 4,-0.9 1,-0.3 -1,-0.2 0.795 110.6 53.2 -55.4 -22.7 5.0 -6.4 -3.3 114 114 A Q H 3X S+ 0 0 8 -4,-0.7 4,-2.0 2,-0.2 -1,-0.3 0.859 105.4 52.0 -80.9 -33.9 2.7 -4.0 -5.1 115 115 A Q H X S+ 0 0 7 -4,-2.0 4,-2.7 1,-0.2 3,-0.6 0.830 107.7 63.9 -74.8 -25.8 -3.6 -4.4 -3.7 119 119 A A H 3X S+ 0 0 47 -4,-0.9 4,-0.5 1,-0.3 -1,-0.2 0.815 109.2 41.7 -67.0 -20.6 -4.5 -8.1 -3.1 120 120 A A H 3< S+ 0 0 0 -4,-0.8 -1,-0.3 -3,-0.5 -2,-0.2 0.514 117.8 47.8 -98.6 -6.1 -4.6 -6.9 0.6 121 121 A F H <4 S+ 0 0 4 -3,-0.6 -83,-0.3 -4,-0.3 -2,-0.2 0.581 115.4 42.6-107.1 -14.5 -6.4 -3.7 -0.5 122 122 A A H < S+ 0 0 29 -4,-2.7 4,-0.4 2,-0.1 -3,-0.2 0.650 114.7 49.4-103.1 -18.7 -9.0 -5.4 -2.8 123 123 A A S <>S+ 0 0 33 -4,-0.5 5,-0.5 -5,-0.4 -1,-0.1 0.350 83.2 105.2 -96.2 4.8 -9.7 -8.3 -0.3 124 124 A L T >>5S+ 0 0 2 3,-0.2 4,-3.2 1,-0.2 3,-1.0 0.955 82.6 38.8 -48.5 -63.1 -10.1 -5.6 2.4 125 125 A P T 345S+ 0 0 36 0, 0.0 2,-1.0 0, 0.0 4,-0.2 0.959 122.8 42.6 -54.9 -56.4 -14.0 -5.9 2.5 126 126 A G T 345S+ 0 0 59 -4,-0.4 -2,-0.2 1,-0.2 -4,-0.0 -0.274 136.4 9.8 -91.8 57.9 -14.0 -9.6 2.1 127 127 A S T <45S+ 0 0 94 -3,-1.0 -3,-0.2 -2,-1.0 -1,-0.2 0.291 134.4 15.0 160.4 -10.2 -11.1 -10.5 4.5 128 128 A A S <> + 0 0 75 -2,-0.3 4,-4.1 -98,-0.1 3,-1.1 -0.610 25.7 174.3-142.9 75.3 -15.2 -2.6 8.4 131 131 A P T 34 S+ 0 0 69 0, 0.0 -1,-0.0 0, 0.0 -98,-0.0 0.431 71.6 86.2 -68.4 9.5 -17.5 -1.6 5.5 132 132 A S T 34 S- 0 0 93 1,-0.0 -3,-0.0 -3,-0.0 0, 0.0 0.273 130.4 -22.4 -88.8 13.3 -19.9 -0.8 8.3 133 133 A W T <4 0 0 173 -3,-1.1 -100,-0.1 -101,-0.3 -1,-0.0 -0.035 360.0 360.0 175.1 -46.1 -18.0 2.5 8.2 134 134 A A < 0 0 34 -4,-4.1 -101,-0.0 -102,-0.0 -5,-0.0 0.861 360.0 360.0 34.5 360.0 -14.6 1.8 6.5