==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 05-OCT-00 1G04 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.A.KOZIN,G.BERTHO,A.K.MAZUR,H.RABESONA,J.-P.GIRAULT, . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2815.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 7 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 68 0, 0.0 21,-0.1 0, 0.0 20,-0.0 0.000 360.0 360.0 360.0 21.6 6.4 9.6 2.4 2 2 A N + 0 0 113 2,-0.0 2,-0.3 20,-0.0 20,-0.1 0.705 360.0 62.5 -76.1 -21.1 6.6 9.6 6.2 3 3 A D + 0 0 67 18,-0.2 18,-0.4 2,-0.0 2,-0.3 -0.770 64.8 123.8-106.3 151.8 3.2 7.8 6.3 4 4 A Y - 0 0 147 -2,-0.3 16,-0.1 20,-0.2 2,-0.1 -0.914 45.7-124.0-174.3-162.2 2.5 4.4 4.9 5 5 A E - 0 0 88 14,-0.9 2,-1.0 -2,-0.3 3,-0.3 -0.447 13.7-167.6-173.0 89.5 1.2 0.9 5.6 6 6 A D + 0 0 104 1,-0.2 3,-0.1 -2,-0.1 13,-0.1 -0.751 62.3 77.6 -87.9 102.5 3.2 -2.2 4.9 7 7 A R + 0 0 192 -2,-1.0 3,-0.3 1,-0.2 -1,-0.2 0.066 42.4 114.0-162.0 -73.0 0.8 -5.1 5.2 8 8 A Y S S- 0 0 82 -3,-0.3 -1,-0.2 1,-0.2 2,-0.1 0.179 84.8-100.3 -21.7 109.8 -1.5 -5.8 2.3 9 9 A Y - 0 0 133 1,-0.1 2,-1.0 6,-0.1 3,-0.3 -0.194 37.4-144.9 -45.4 106.8 -0.3 -9.1 1.0 10 10 A R + 0 0 87 -3,-0.3 -1,-0.1 1,-0.2 6,-0.1 -0.705 48.4 134.0 -83.7 101.8 1.8 -8.1 -2.0 11 11 A E - 0 0 97 -2,-1.0 -1,-0.2 2,-0.3 3,-0.1 0.772 65.7-106.1-110.6 -59.2 1.3 -10.8 -4.5 12 12 A N S S+ 0 0 119 1,-0.7 3,-0.3 -3,-0.3 4,-0.2 -0.405 86.7 64.4 164.7 -75.7 0.6 -9.2 -7.9 13 13 A M S S- 0 0 145 1,-0.2 2,-2.5 2,-0.1 -1,-0.7 0.225 116.4 -39.6 -60.4-169.2 -3.0 -9.4 -9.0 14 14 A Y S S+ 0 0 224 1,-0.2 -1,-0.2 -3,-0.1 0, 0.0 -0.330 103.8 107.9 -59.6 78.5 -5.9 -7.8 -7.2 15 15 A R S S+ 0 0 135 -2,-2.5 -1,-0.2 1,-0.5 -6,-0.1 0.361 83.2 4.8-133.2 -6.6 -4.6 -8.6 -3.8 16 16 A Y - 0 0 76 -3,-0.5 -1,-0.5 -4,-0.2 -4,-0.0 -0.910 55.6-135.3-176.9 150.3 -3.5 -5.1 -2.7 17 17 A P - 0 0 56 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.965 49.5-102.3 -75.0 -84.7 -3.4 -1.5 -3.7 18 18 A N - 0 0 59 -13,-0.1 -13,-0.1 3,-0.0 3,-0.0 -0.003 29.3-169.6-168.1 -70.0 0.0 -0.0 -3.0 19 19 A Q + 0 0 45 1,-0.1 -14,-0.9 -15,-0.1 2,-0.2 0.908 53.0 116.4 58.9 44.8 0.3 2.1 0.1 20 20 A V + 0 0 86 -16,-0.1 2,-0.3 -14,-0.0 -1,-0.1 -0.663 51.4 59.3-145.6 83.0 3.8 3.2 -1.0 21 21 A Y S S- 0 0 68 -18,-0.4 2,-0.9 -2,-0.2 -18,-0.2 -0.968 91.1 -75.6 176.7 178.8 4.0 6.9 -1.7 22 22 A Y S S+ 0 0 181 -2,-0.3 -18,-0.1 1,-0.2 -20,-0.0 -0.431 98.6 90.8 -95.0 57.8 3.6 10.4 -0.3 23 23 A R S > S+ 0 0 154 -2,-0.9 3,-1.6 -20,-0.2 -1,-0.2 0.673 72.5 61.9-116.3 -38.0 -0.2 10.4 -0.3 24 24 A P T 3 S+ 0 0 55 0, 0.0 -20,-0.2 0, 0.0 -2,-0.1 0.271 90.4 76.6 -75.0 13.0 -1.0 9.1 3.1 25 25 A V T 3 0 0 51 -22,-0.2 -2,-0.1 -23,-0.0 -3,-0.1 0.652 360.0 360.0 -94.0 -21.1 0.7 12.2 4.4 26 26 A C < 0 0 183 -3,-1.6 -3,-0.0 0, 0.0 0, 0.0 -0.373 360.0 360.0 -52.6 360.0 -2.2 14.4 3.6