==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 11-FEB-06 2G0C . COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DBPA; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; . AUTHOR D.B.MCKAY . 68 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4354.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 64.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 404 A M 0 0 62 0, 0.0 43,-3.4 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 134.0 22.0 44.1 23.1 2 405 A K E -A 43 0A 83 41,-0.2 67,-3.0 39,-0.1 2,-0.6 -0.697 360.0-162.6 -85.8 129.5 22.4 42.2 19.9 3 406 A L E -AB 42 68A 7 39,-2.6 39,-1.4 -2,-0.5 65,-0.2 -0.944 7.2-147.9-116.8 118.8 25.9 41.7 18.8 4 407 A Y E -AB 41 67A 66 63,-2.8 63,-1.2 -2,-0.6 2,-0.4 -0.529 11.9-172.7 -82.8 144.6 26.7 40.7 15.2 5 408 A F E -AB 40 66A 26 35,-2.4 2,-2.4 -2,-0.2 35,-1.9 -0.994 33.0-122.0-134.2 137.7 29.5 38.6 14.0 6 409 A N S S+ 0 0 76 59,-1.2 2,-0.4 -2,-0.4 33,-0.1 -0.212 84.1 95.2 -75.9 52.3 30.3 38.0 10.4 7 410 A G + 0 0 23 -2,-2.4 -2,-0.2 33,-0.2 29,-0.2 -0.963 43.1 137.8-144.6 123.6 29.9 34.3 10.7 8 411 A G - 0 0 23 -2,-0.4 29,-0.2 29,-0.3 30,-0.1 -0.375 69.3 -41.1-136.4-144.4 26.8 32.3 9.9 9 412 A K 0 0 146 27,-2.7 28,-0.2 30,-0.3 29,-0.1 0.924 360.0 360.0 -59.2 -44.7 25.6 29.1 8.3 10 413 A K 0 0 159 27,-2.1 28,-0.1 26,-0.3 27,-0.0 0.730 360.0 360.0 -83.1 360.0 28.1 29.6 5.4 11 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 12 418 A A > 0 0 60 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -38.5 25.8 28.5 18.7 13 419 A V H > + 0 0 116 1,-0.2 4,-2.0 2,-0.2 0, 0.0 0.811 360.0 59.2 -64.9 -30.4 28.2 26.5 20.8 14 420 A D H > S+ 0 0 125 1,-0.2 4,-1.6 2,-0.2 5,-0.2 0.908 109.8 39.0 -66.8 -44.5 31.1 28.4 19.2 15 421 A F H > S+ 0 0 10 2,-0.2 4,-1.3 1,-0.2 5,-0.3 0.765 112.0 55.9 -80.9 -23.2 29.9 31.8 20.4 16 422 A V H X S+ 0 0 48 -4,-1.7 4,-2.7 3,-0.2 -2,-0.2 0.952 108.2 52.9 -68.1 -45.2 28.8 30.7 23.8 17 423 A G H X S+ 0 0 35 -4,-2.0 4,-0.8 2,-0.2 -2,-0.2 0.933 113.9 35.1 -63.5 -49.0 32.3 29.3 24.3 18 424 A T H >< S+ 0 0 22 -4,-1.6 3,-1.0 1,-0.2 4,-0.3 0.992 122.8 48.0 -72.8 -39.6 34.6 32.6 23.4 19 425 A I H >< S+ 0 0 2 -4,-1.3 3,-1.9 1,-0.3 -2,-0.2 0.898 104.7 58.0 -63.3 -38.7 32.0 34.9 24.9 20 426 A A H 3< S+ 0 0 31 -4,-2.7 -1,-0.3 -5,-0.3 -2,-0.2 0.741 102.7 55.7 -66.3 -20.1 31.6 32.8 28.1 21 427 A K T << S+ 0 0 173 -3,-1.0 -1,-0.3 -4,-0.8 -2,-0.2 0.456 80.5 119.1 -90.1 1.0 35.4 33.3 28.7 22 428 A I S X S- 0 0 10 -3,-1.9 3,-2.1 -4,-0.3 30,-0.1 -0.392 79.4 -94.9 -68.7 137.5 35.2 37.1 28.6 23 429 A D T 3 S+ 0 0 139 1,-0.3 -1,-0.1 -2,-0.1 3,-0.1 -0.322 110.4 9.6 -50.6 122.1 36.3 38.9 31.9 24 430 A G T 3 S+ 0 0 54 1,-0.3 2,-0.3 -3,-0.1 -1,-0.3 0.607 111.7 98.8 82.0 12.7 33.1 39.6 33.9 25 431 A V < + 0 0 14 -3,-2.1 2,-0.3 -5,-0.1 -1,-0.3 -0.924 43.0 175.0-131.2 149.1 30.8 37.5 31.8 26 432 A S > - 0 0 50 -2,-0.3 3,-2.3 -3,-0.1 4,-0.1 -0.894 52.6 -84.3-141.6 177.3 29.4 34.0 32.1 27 433 A A G > S+ 0 0 57 1,-0.3 3,-1.9 -2,-0.3 -7,-0.1 0.782 120.9 69.9 -54.9 -29.4 26.9 31.8 30.2 28 434 A D G 3 S+ 0 0 132 1,-0.3 -1,-0.3 -8,-0.1 18,-0.1 0.651 94.6 55.5 -65.8 -13.4 24.1 33.5 32.2 29 435 A D G < S+ 0 0 8 -3,-2.3 16,-2.7 16,-0.1 2,-0.6 0.330 88.7 91.5 -99.5 5.0 24.7 36.7 30.2 30 436 A I E < +C 44 0A 23 -3,-1.9 14,-0.2 14,-0.2 3,-0.1 -0.916 55.3 175.3-105.3 116.8 24.3 35.0 26.9 31 437 A G E - 0 0 24 12,-3.1 2,-0.1 -2,-0.6 13,-0.1 0.306 45.4 -12.2 -92.0-140.3 20.8 35.1 25.5 32 438 A I E - 0 0 130 10,-0.1 11,-2.7 1,-0.1 2,-0.5 -0.360 57.9-146.2 -67.0 139.5 19.2 34.0 22.2 33 439 A I E -C 42 0A 49 9,-0.2 2,-0.5 -3,-0.1 9,-0.2 -0.915 11.6-165.6-109.1 128.7 21.5 33.1 19.3 34 440 A T E -C 41 0A 36 7,-3.0 7,-2.5 -2,-0.5 2,-0.5 -0.956 1.1-166.8-120.8 124.2 20.4 33.8 15.8 35 441 A I E +C 40 0A 76 -2,-0.5 5,-0.2 5,-0.2 2,-0.2 -0.919 12.5 167.8-115.3 121.4 22.1 32.2 12.7 36 442 A M - 0 0 74 3,-2.0 -27,-2.7 -2,-0.5 -26,-0.3 -0.538 49.8 -83.5-116.8-175.5 21.5 33.4 9.2 37 443 A D S S+ 0 0 76 -29,-0.2 -27,-2.1 -2,-0.2 -29,-0.3 0.950 117.5 4.9 -58.7 -56.8 23.3 32.8 5.9 38 444 A N S S+ 0 0 118 -30,-0.1 2,-0.3 -29,-0.1 -1,-0.2 0.368 131.3 32.1-115.9 8.3 26.2 35.2 6.0 39 445 A A - 0 0 26 -32,-0.1 -3,-2.0 -33,-0.1 -30,-0.3 -0.965 57.3-166.8-155.0 161.6 25.9 36.8 9.4 40 446 A S E -AC 5 35A 2 -35,-1.9 -35,-2.4 -2,-0.3 2,-0.3 -0.927 5.4-162.9-145.1 162.5 24.8 35.8 12.9 41 447 A Y E -AC 4 34A 52 -7,-2.5 -7,-3.0 -2,-0.3 2,-0.4 -0.965 4.7-155.6-147.2 161.3 24.0 37.7 16.1 42 448 A V E -AC 3 33A 0 -39,-1.4 -39,-2.6 -2,-0.3 2,-0.5 -0.998 22.2-123.1-139.7 136.2 23.6 36.9 19.7 43 449 A E E -A 2 0A 49 -11,-2.7 -12,-3.1 -2,-0.4 2,-0.5 -0.709 23.6-152.8 -81.0 121.6 21.7 38.8 22.4 44 450 A I E - C 0 30A 3 -43,-3.4 5,-0.3 -2,-0.5 3,-0.3 -0.856 17.8-150.2 -97.0 128.3 24.0 39.8 25.3 45 451 A L > + 0 0 65 -16,-2.7 3,-1.9 -2,-0.5 -16,-0.1 -0.283 60.4 32.9 -93.8 175.0 22.1 40.2 28.6 46 452 A N T 3 S- 0 0 116 1,-0.3 -1,-0.2 2,-0.1 -17,-0.0 0.721 121.6 -66.8 53.9 32.2 22.3 42.3 31.8 47 453 A G T 3 S+ 0 0 74 -3,-0.3 4,-0.3 1,-0.1 -1,-0.3 0.585 106.3 118.9 70.5 12.9 23.8 45.4 30.1 48 454 A K <> + 0 0 61 -3,-1.9 4,-2.7 1,-0.2 5,-0.2 0.409 40.0 99.1 -91.1 4.0 27.0 43.7 29.3 49 455 A G H > S+ 0 0 1 -5,-0.3 4,-2.7 1,-0.2 5,-0.2 0.932 81.2 47.7 -55.6 -53.7 26.7 44.1 25.5 50 456 A P H > S+ 0 0 47 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.868 114.5 48.8 -55.8 -38.8 28.9 47.2 25.1 51 457 A H H > S+ 0 0 75 -4,-0.3 4,-2.6 2,-0.2 5,-0.3 0.942 110.6 48.8 -67.2 -49.3 31.6 45.5 27.2 52 458 A V H X S+ 0 0 0 -4,-2.7 4,-2.9 1,-0.2 -1,-0.2 0.913 111.1 51.7 -58.8 -41.8 31.5 42.2 25.3 53 459 A L H X S+ 0 0 13 -4,-2.7 4,-1.2 -5,-0.2 -1,-0.2 0.950 110.8 46.5 -60.5 -49.3 31.7 44.2 22.0 54 460 A K H < S+ 0 0 150 -4,-2.1 3,-0.4 1,-0.2 -2,-0.2 0.903 115.2 46.6 -61.4 -39.5 34.8 46.1 23.1 55 461 A V H >< S+ 0 0 39 -4,-2.6 3,-2.0 1,-0.2 -1,-0.2 0.930 109.2 54.2 -69.9 -40.6 36.5 43.0 24.4 56 462 A M H >< S+ 0 0 4 -4,-2.9 3,-0.7 1,-0.3 -1,-0.2 0.703 96.2 65.8 -68.4 -16.8 35.7 41.0 21.2 57 463 A K T 3< S+ 0 0 114 -4,-1.2 -1,-0.3 -3,-0.4 -2,-0.2 0.558 112.6 36.7 -74.2 -10.1 37.3 43.7 19.1 58 464 A N T < S+ 0 0 138 -3,-2.0 2,-0.5 -4,-0.2 -1,-0.2 0.224 107.0 86.4-122.5 9.5 40.5 42.5 20.8 59 465 A T < - 0 0 38 -3,-0.7 5,-0.4 5,-0.1 2,-0.2 -0.950 60.4-149.3-127.3 124.4 39.6 38.8 21.0 60 466 A T 0 0 106 -2,-0.5 -2,-0.0 3,-0.2 -3,-0.0 -0.501 360.0 360.0 -84.7 153.5 40.2 36.0 18.5 61 467 A V 0 0 83 -2,-0.2 -46,-0.1 -5,-0.0 -47,-0.0 -0.978 360.0 360.0-123.0 360.0 37.9 33.0 18.1 62 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 63 471 A Q 0 0 111 0, 0.0 -3,-0.2 0, 0.0 -6,-0.0 0.000 360.0 360.0 360.0 93.2 39.2 37.7 14.7 64 472 A L - 0 0 46 -5,-0.4 2,-0.6 -8,-0.1 -5,-0.1 -0.292 360.0-108.3 -73.4 160.1 35.6 38.2 13.6 65 473 A K - 0 0 153 2,-0.0 -59,-1.2 -2,-0.0 2,-0.4 -0.813 44.3-171.0 -89.1 120.5 34.1 41.5 12.7 66 474 A V E +B 5 0A 13 -2,-0.6 2,-0.3 -61,-0.2 -61,-0.2 -0.913 14.3 154.2-118.7 144.1 31.8 42.5 15.6 67 475 A N E -B 4 0A 84 -63,-1.2 -63,-2.8 -2,-0.4 2,-0.2 -0.981 47.3 -89.0-160.4 158.9 29.3 45.3 15.8 68 476 A K E -B 3 0A 102 -2,-0.3 -65,-0.2 -65,-0.2 -2,-0.0 -0.540 28.0-149.8 -71.4 134.9 26.1 46.3 17.6 69 477 A A 0 0 33 -67,-3.0 -1,-0.2 -2,-0.2 -66,-0.1 0.995 360.0 360.0 -63.6 -72.9 23.0 45.3 15.6 70 478 A N 0 0 193 -68,-0.2 -2,-0.1 -3,-0.1 0, 0.0 0.244 360.0 360.0 -20.9 360.0 20.9 48.1 16.9