==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 29-JAN-09 3G0V . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; . AUTHOR R.L.KINGSTON . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4714.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 47.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 151 A G > 0 0 73 0, 0.0 3,-1.2 0, 0.0 4,-0.3 0.000 360.0 360.0 360.0 147.7 -34.0 -3.2 9.1 2 152 A P G > + 0 0 90 0, 0.0 3,-1.1 0, 0.0 4,-0.3 0.842 360.0 52.5 -57.0 -44.0 -30.2 -2.2 9.5 3 153 A W G > S+ 0 0 51 21,-0.3 3,-1.2 1,-0.2 22,-0.1 0.761 93.1 77.9 -60.6 -29.2 -28.9 -5.1 7.4 4 154 A A G < S+ 0 0 39 -3,-1.2 -1,-0.2 1,-0.3 17,-0.0 0.634 93.2 46.6 -64.9 -18.8 -31.4 -4.2 4.6 5 155 A D G < S+ 0 0 139 -3,-1.1 -1,-0.3 -4,-0.3 2,-0.2 0.561 82.7 116.0 -99.4 -10.9 -29.3 -1.3 3.2 6 156 A I < + 0 0 23 -3,-1.2 2,-0.3 -4,-0.3 -3,-0.0 -0.402 38.7 170.4 -64.8 126.2 -25.9 -3.1 3.2 7 157 A M - 0 0 103 -2,-0.2 2,-0.3 38,-0.0 40,-0.2 -0.991 38.2-103.5-139.2 144.1 -24.5 -3.4 -0.3 8 158 A Q - 0 0 8 38,-2.3 6,-0.1 -2,-0.3 5,-0.0 -0.524 37.6-128.5 -67.6 127.1 -21.1 -4.6 -1.6 9 159 A G > - 0 0 18 -2,-0.3 3,-1.3 4,-0.2 39,-0.2 -0.385 16.9-118.9 -72.1 151.7 -19.0 -1.7 -2.8 10 160 A P T 3 S+ 0 0 111 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.690 120.1 40.5 -65.7 -17.8 -17.4 -1.9 -6.3 11 161 A S T 3 S+ 0 0 129 2,-0.1 2,-0.4 0, 0.0 -2,-0.0 0.343 99.5 95.8-107.4 6.3 -14.1 -1.7 -4.5 12 162 A E S < S- 0 0 44 -3,-1.3 36,-0.1 1,-0.1 2,-0.0 -0.771 75.2-119.0-101.0 138.4 -15.0 -4.0 -1.6 13 163 A S > - 0 0 52 -2,-0.4 4,-1.9 1,-0.1 5,-0.2 -0.357 23.6-118.1 -70.3 154.4 -14.2 -7.8 -1.5 14 164 A F H > S+ 0 0 11 1,-0.2 4,-2.6 2,-0.2 5,-0.1 0.897 113.8 51.6 -59.7 -41.2 -17.1 -10.2 -1.3 15 165 A V H > S+ 0 0 45 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.815 107.3 52.3 -70.1 -32.0 -15.9 -11.6 2.0 16 166 A D H > S+ 0 0 89 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.890 112.9 45.0 -67.0 -42.0 -15.7 -8.2 3.6 17 167 A F H X S+ 0 0 0 -4,-1.9 4,-2.8 2,-0.2 -2,-0.2 0.908 112.1 52.3 -64.5 -45.3 -19.2 -7.4 2.5 18 168 A A H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 5,-0.2 0.910 109.8 49.3 -57.3 -43.6 -20.4 -10.9 3.8 19 169 A N H X S+ 0 0 93 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.917 113.3 45.5 -66.2 -44.0 -18.8 -10.2 7.2 20 170 A R H X S+ 0 0 102 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.903 114.7 49.1 -59.4 -50.2 -20.4 -6.8 7.5 21 171 A L H X S+ 0 0 0 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.939 112.0 47.1 -56.4 -49.8 -23.8 -8.1 6.4 22 172 A I H X S+ 0 0 42 -4,-2.8 4,-3.2 1,-0.2 5,-0.2 0.909 109.4 53.6 -64.6 -41.4 -23.7 -11.1 8.7 23 173 A K H X S+ 0 0 168 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.931 110.6 47.9 -57.9 -46.4 -22.7 -8.9 11.7 24 174 A A H < S+ 0 0 23 -4,-2.3 4,-0.3 2,-0.2 -21,-0.3 0.895 113.4 46.9 -62.3 -42.3 -25.7 -6.6 11.0 25 175 A V H >< S+ 0 0 0 -4,-2.5 3,-1.4 2,-0.2 5,-0.3 0.940 112.5 49.0 -65.1 -45.9 -28.1 -9.5 10.7 26 176 A E H 3< S+ 0 0 95 -4,-3.2 -2,-0.2 1,-0.3 -1,-0.2 0.902 114.1 47.4 -61.8 -37.9 -26.8 -11.2 13.9 27 177 A G T 3< S+ 0 0 72 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.447 99.6 91.5 -80.3 -1.6 -27.1 -7.9 15.7 28 178 A S S < S- 0 0 21 -3,-1.4 -3,-0.1 -4,-0.3 -4,-0.0 -0.275 89.4-106.1 -90.6 178.9 -30.6 -7.2 14.4 29 179 A A S S+ 0 0 110 -2,-0.1 -1,-0.1 2,-0.0 -4,-0.1 0.388 75.3 126.9 -84.7 3.3 -34.1 -8.0 15.9 30 180 A L - 0 0 37 -5,-0.3 5,-0.1 1,-0.1 -2,-0.0 -0.330 68.9-109.2 -58.0 141.9 -34.6 -10.8 13.3 31 181 A P >> - 0 0 75 0, 0.0 3,-1.9 0, 0.0 4,-0.6 -0.436 34.0-104.0 -70.6 154.0 -35.6 -14.1 15.0 32 182 A P H >> S+ 0 0 92 0, 0.0 3,-1.2 0, 0.0 4,-0.5 0.821 117.9 52.0 -50.7 -41.9 -32.8 -16.8 14.8 33 183 A S H 34 S+ 0 0 109 1,-0.3 -3,-0.0 2,-0.1 3,-0.0 0.632 104.5 58.1 -75.3 -10.9 -34.4 -18.9 12.0 34 184 A A H <> S+ 0 0 26 -3,-1.9 4,-1.7 1,-0.1 -1,-0.3 0.629 88.7 78.4 -86.1 -14.1 -34.8 -15.9 9.7 35 185 A R H S+ 0 0 76 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.870 114.7 50.2 -66.1 -32.3 -32.3 -17.0 4.5 38 188 A V H X S+ 0 0 27 -4,-1.7 4,-2.5 2,-0.2 -2,-0.2 0.936 111.7 48.6 -64.4 -45.9 -32.0 -13.2 4.9 39 189 A I H X S+ 0 0 6 -4,-3.0 4,-2.4 1,-0.2 5,-0.2 0.956 113.2 47.0 -57.2 -51.9 -28.2 -13.6 4.7 40 190 A I H X S+ 0 0 20 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.907 111.6 50.9 -53.9 -49.5 -28.5 -15.8 1.5 41 191 A D H X S+ 0 0 87 -4,-2.3 4,-2.6 -5,-0.2 5,-0.2 0.919 109.7 49.9 -59.1 -45.1 -31.0 -13.4 -0.1 42 192 A C H X S+ 0 0 6 -4,-2.5 4,-2.7 2,-0.2 5,-0.4 0.871 108.6 53.1 -60.1 -42.2 -28.7 -10.4 0.6 43 193 A F H X S+ 0 0 0 -4,-2.4 4,-0.8 -5,-0.2 -1,-0.2 0.933 114.8 42.5 -55.4 -44.8 -25.7 -12.3 -1.0 44 194 A R H < S+ 0 0 91 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.884 127.7 27.8 -72.0 -38.0 -27.9 -12.9 -4.1 45 195 A Q H < S+ 0 0 113 -4,-2.6 -3,-0.2 -5,-0.1 -2,-0.2 0.665 123.5 41.7 -99.3 -23.0 -29.4 -9.4 -4.3 46 196 A K H < S+ 0 0 70 -4,-2.7 -38,-2.3 -5,-0.2 -3,-0.2 0.401 86.1 97.3-118.8 -2.7 -26.9 -7.0 -2.8 47 197 A S S < S- 0 0 4 -4,-0.8 -33,-0.0 -5,-0.4 -4,-0.0 -0.326 90.3 -74.6 -76.8 168.5 -23.5 -8.1 -4.0 48 198 A Q >> - 0 0 51 -39,-0.2 4,-2.8 -36,-0.1 3,-0.6 -0.290 51.3-105.6 -58.5 149.4 -21.8 -6.5 -7.0 49 199 A P H 3> S+ 0 0 68 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.873 120.5 52.4 -48.9 -44.1 -23.3 -7.5 -10.4 50 200 A D H 3> S+ 0 0 129 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.875 113.0 45.0 -62.5 -37.5 -20.4 -9.8 -11.3 51 201 A I H <> S+ 0 0 18 -3,-0.6 4,-3.5 2,-0.2 5,-0.3 0.902 110.0 54.0 -71.3 -42.6 -20.8 -11.6 -7.9 52 202 A Q H X S+ 0 0 61 -4,-2.8 4,-2.0 1,-0.2 -2,-0.2 0.925 110.6 48.3 -54.7 -43.8 -24.6 -11.8 -8.3 53 203 A Q H < S+ 0 0 98 -4,-2.6 4,-0.4 -5,-0.2 -1,-0.2 0.874 112.4 47.9 -68.2 -35.4 -24.0 -13.5 -11.6 54 204 A L H >< S+ 0 0 42 -4,-1.7 3,-1.5 -5,-0.2 4,-0.4 0.936 110.0 52.0 -67.2 -47.4 -21.4 -15.9 -10.1 55 205 A I H >< S+ 0 0 1 -4,-3.5 3,-1.9 1,-0.3 -2,-0.2 0.900 100.7 61.3 -57.3 -40.0 -23.7 -16.8 -7.2 56 206 A R T 3< S+ 0 0 181 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.710 96.4 61.5 -68.7 -10.1 -26.6 -17.6 -9.5 57 207 A T T < S+ 0 0 88 -3,-1.5 -1,-0.3 -4,-0.4 -2,-0.2 0.662 80.7 112.3 -81.0 -13.8 -24.4 -20.4 -11.2 58 208 A A S < S- 0 0 16 -3,-1.9 10,-0.0 -4,-0.4 -3,-0.0 -0.226 79.6-100.5 -59.8 144.6 -24.2 -22.3 -7.8 59 209 A P > - 0 0 63 0, 0.0 3,-2.1 0, 0.0 -1,-0.1 -0.351 26.9-118.7 -65.8 148.1 -25.9 -25.6 -7.5 60 210 A S T 3 S+ 0 0 115 1,-0.3 -2,-0.1 -3,-0.1 -3,-0.0 0.695 110.2 73.9 -60.6 -18.2 -29.3 -25.6 -5.7 61 211 A T T 3 S+ 0 0 105 1,-0.0 2,-0.9 2,-0.0 -1,-0.3 0.577 74.1 89.1 -70.7 -11.2 -27.7 -28.0 -3.2 62 212 A L < + 0 0 36 -3,-2.1 -1,-0.0 1,-0.2 -4,-0.0 -0.813 49.3 151.0 -87.9 106.5 -25.7 -25.1 -1.7 63 213 A T + 0 0 96 -2,-0.9 -1,-0.2 5,-0.0 -23,-0.1 0.588 38.7 75.2-118.5 -15.7 -28.1 -23.8 0.9 64 214 A T S > S- 0 0 61 1,-0.1 4,-1.7 -25,-0.0 3,-0.3 -0.669 79.5-118.6-101.1 158.1 -26.0 -22.2 3.8 65 215 A P H > S+ 0 0 20 0, 0.0 4,-2.6 0, 0.0 3,-0.2 0.936 115.7 56.0 -58.6 -43.0 -24.2 -18.8 3.8 66 216 A G H > S+ 0 0 34 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.843 104.9 52.3 -53.9 -40.4 -20.9 -20.6 4.4 67 217 A E H > S+ 0 0 62 -3,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.900 111.5 45.6 -64.5 -41.3 -21.4 -22.7 1.2 68 218 A I H X S+ 0 0 1 -4,-1.7 4,-2.6 -3,-0.2 5,-0.2 0.903 110.7 54.2 -67.9 -43.0 -22.0 -19.6 -0.9 69 219 A I H X S+ 0 0 30 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.930 112.8 42.1 -55.9 -48.6 -19.0 -17.8 0.7 70 220 A K H X S+ 0 0 127 -4,-2.2 4,-3.0 2,-0.2 -1,-0.2 0.895 111.2 56.7 -68.5 -39.4 -16.7 -20.7 -0.2 71 221 A Y H X S+ 0 0 23 -4,-2.2 4,-0.5 -5,-0.2 -2,-0.2 0.950 114.2 39.3 -51.4 -52.0 -18.4 -21.1 -3.7 72 222 A V H >< S+ 0 0 0 -4,-2.6 3,-1.3 1,-0.2 4,-0.2 0.960 118.3 46.3 -65.5 -55.6 -17.5 -17.4 -4.4 73 223 A L H >< S+ 0 0 68 -4,-2.7 3,-1.5 1,-0.2 -2,-0.2 0.873 108.8 55.4 -54.9 -43.1 -14.0 -17.4 -2.7 74 224 A D H 3< S+ 0 0 119 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.628 108.1 51.1 -68.4 -13.3 -12.9 -20.7 -4.4 75 225 A R T << 0 0 130 -3,-1.3 -1,-0.3 -4,-0.5 -2,-0.2 0.308 360.0 360.0-107.5 7.5 -13.7 -19.2 -7.8 76 226 A Q < 0 0 172 -3,-1.5 -2,-0.2 -4,-0.2 -1,-0.1 0.530 360.0 360.0 -93.0 360.0 -11.7 -15.9 -7.4