==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-JAN-09 3G21 . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; . AUTHOR R.L.KINGSTON . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4906.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 150 A A 0 0 108 0, 0.0 24,-0.1 0, 0.0 23,-0.0 0.000 360.0 360.0 360.0 166.1 10.9 13.2 13.8 2 151 A G - 0 0 41 19,-0.2 2,-1.4 1,-0.1 3,-0.1 -0.209 360.0 -91.2 -73.6 161.7 8.0 10.8 14.4 3 152 A P > - 0 0 82 0, 0.0 3,-2.1 0, 0.0 4,-0.4 -0.587 41.2-166.4 -76.2 100.0 7.8 8.4 17.2 4 153 A W G > S+ 0 0 69 -2,-1.4 3,-1.1 1,-0.3 22,-0.1 0.798 82.5 58.7 -56.5 -34.5 9.5 5.4 15.6 5 154 A A G 3 S+ 0 0 54 1,-0.2 -1,-0.3 -3,-0.1 17,-0.0 0.597 104.1 53.5 -76.2 -7.9 8.4 2.9 18.2 6 155 A D G < S+ 0 0 121 -3,-2.1 2,-0.4 2,-0.0 -1,-0.2 0.436 82.1 112.8 -97.2 -4.5 4.7 3.8 17.5 7 156 A I < + 0 0 10 -3,-1.1 2,-0.3 -4,-0.4 11,-0.0 -0.547 37.0 161.1 -83.9 123.2 4.9 3.2 13.8 8 157 A M - 0 0 110 -2,-0.4 2,-0.7 38,-0.0 40,-0.2 -0.983 47.1 -99.0-133.8 152.6 2.9 0.2 12.4 9 158 A Q - 0 0 13 38,-2.8 6,-0.1 -2,-0.3 -2,-0.0 -0.629 42.5-147.3 -77.2 119.8 1.7 -0.7 9.1 10 159 A G > - 0 0 21 -2,-0.7 3,-1.6 4,-0.1 39,-0.1 -0.263 26.3-102.7 -80.7 168.0 -1.9 0.3 8.9 11 160 A P T 3 S+ 0 0 129 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.703 122.2 44.8 -72.2 -12.0 -4.5 -1.6 6.9 12 161 A S T 3 S+ 0 0 126 2,-0.1 2,-0.4 0, 0.0 -3,-0.0 0.315 99.4 92.0-108.2 14.8 -4.5 1.0 4.0 13 162 A E < - 0 0 29 -3,-1.6 2,-0.1 4,-0.0 -4,-0.0 -0.836 69.8-133.6-106.1 138.4 -0.7 1.3 4.0 14 163 A S > - 0 0 63 -2,-0.4 4,-2.1 1,-0.1 5,-0.2 -0.401 29.4-109.0 -75.2 167.5 1.7 -0.7 1.8 15 164 A F H > S+ 0 0 10 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.934 118.8 51.2 -61.1 -45.2 4.7 -2.3 3.3 16 165 A V H > S+ 0 0 47 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.893 106.2 53.6 -67.3 -36.0 7.0 0.1 1.5 17 166 A D H > S+ 0 0 78 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.941 112.6 45.3 -62.7 -42.6 5.1 3.1 2.8 18 167 A F H X S+ 0 0 0 -4,-2.1 4,-3.0 2,-0.2 5,-0.3 0.920 112.2 51.7 -59.2 -44.4 5.5 1.8 6.3 19 168 A A H X S+ 0 0 0 -4,-3.0 4,-2.9 1,-0.2 5,-0.2 0.944 112.0 46.4 -61.3 -44.2 9.2 1.0 5.7 20 169 A N H X S+ 0 0 93 -4,-2.8 4,-2.3 2,-0.2 -1,-0.2 0.925 114.8 46.6 -63.7 -42.9 9.8 4.5 4.5 21 170 A R H X S+ 0 0 107 -4,-2.2 4,-2.1 -5,-0.3 -1,-0.2 0.916 115.4 46.6 -60.9 -51.0 7.9 6.1 7.4 22 171 A L H X S+ 0 0 0 -4,-3.0 4,-2.6 2,-0.2 5,-0.2 0.937 112.7 47.9 -57.7 -51.2 9.7 3.9 9.9 23 172 A I H X S+ 0 0 40 -4,-2.9 4,-2.9 -5,-0.3 5,-0.2 0.910 110.1 52.0 -64.8 -43.4 13.2 4.4 8.5 24 173 A K H X S+ 0 0 169 -4,-2.3 4,-1.6 -5,-0.2 -1,-0.2 0.926 112.3 47.1 -57.0 -44.4 12.7 8.2 8.4 25 174 A A H < S+ 0 0 4 -4,-2.1 4,-0.4 2,-0.2 -21,-0.3 0.909 112.3 48.8 -66.2 -41.2 11.6 8.2 12.0 26 175 A V H >< S+ 0 0 0 -4,-2.6 3,-1.3 1,-0.2 5,-0.3 0.929 110.1 51.8 -62.7 -43.6 14.5 6.0 13.1 27 176 A E H 3< S+ 0 0 97 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.838 110.5 49.0 -64.3 -31.5 17.0 8.2 11.3 28 177 A G T 3< S+ 0 0 47 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.478 97.7 95.1 -84.8 -0.3 15.6 11.3 13.0 29 178 A S S < S- 0 0 30 -3,-1.3 -3,-0.1 -4,-0.4 -27,-0.0 -0.212 86.8-111.1 -80.8 174.7 15.8 9.7 16.4 30 179 A D S S+ 0 0 153 -2,-0.0 -1,-0.1 2,-0.0 -3,-0.1 0.252 73.2 127.5 -88.0 9.9 18.4 9.9 19.1 31 180 A L S S- 0 0 34 -5,-0.3 5,-0.1 1,-0.1 -2,-0.0 -0.369 71.2-100.0 -63.1 146.8 19.5 6.2 18.6 32 181 A P >> - 0 0 72 0, 0.0 3,-1.3 0, 0.0 4,-0.7 -0.306 34.1-111.8 -62.1 149.6 23.2 5.6 18.0 33 182 A P H >> S+ 0 0 92 0, 0.0 3,-1.2 0, 0.0 4,-0.5 0.898 116.9 55.4 -55.1 -40.1 23.9 5.1 14.4 34 183 A S H 34 S+ 0 0 105 1,-0.3 3,-0.1 2,-0.1 -3,-0.0 0.702 103.0 56.9 -67.1 -18.9 24.8 1.4 14.9 35 184 A A H <> S+ 0 0 24 -3,-1.3 4,-2.0 1,-0.1 -1,-0.3 0.635 87.7 79.9 -82.1 -17.3 21.5 0.7 16.5 36 185 A R H S+ 0 0 70 0, 0.0 4,-2.4 0, 0.0 -1,-0.2 0.887 113.9 49.8 -63.7 -35.0 18.9 -3.7 14.0 39 188 A V H X S+ 0 0 30 -4,-2.0 4,-2.7 2,-0.2 -2,-0.2 0.928 110.7 49.8 -63.0 -46.2 16.0 -1.6 15.2 40 189 A I H X S+ 0 0 6 -4,-2.7 4,-2.7 -5,-0.2 -1,-0.2 0.935 111.3 48.8 -59.6 -46.8 14.6 -1.3 11.7 41 190 A I H X S+ 0 0 20 -4,-2.7 4,-2.0 2,-0.2 -1,-0.2 0.931 111.9 48.6 -59.8 -46.1 14.8 -5.0 11.1 42 191 A D H X S+ 0 0 70 -4,-2.4 4,-2.1 -5,-0.2 -1,-0.2 0.926 112.2 48.5 -61.0 -41.1 13.1 -5.8 14.4 43 192 A C H X S+ 0 0 12 -4,-2.7 4,-2.7 1,-0.2 5,-0.3 0.872 107.1 55.9 -69.7 -33.4 10.3 -3.3 13.6 44 193 A F H X S+ 0 0 1 -4,-2.7 4,-0.8 -5,-0.2 -1,-0.2 0.926 113.4 42.4 -55.5 -46.0 9.9 -4.8 10.1 45 194 A R H < S+ 0 0 138 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.855 125.9 31.7 -68.2 -38.6 9.3 -8.2 11.8 46 195 A Q H < S+ 0 0 124 -4,-2.1 -2,-0.2 -5,-0.2 -3,-0.2 0.685 122.4 40.0 -95.3 -26.4 7.1 -7.0 14.6 47 196 A K H < S+ 0 0 47 -4,-2.7 -38,-2.8 -5,-0.2 -3,-0.2 0.406 88.3 96.3-116.1 -2.4 5.2 -4.0 13.2 48 197 A S S < S- 0 0 5 -4,-0.8 -33,-0.0 -5,-0.3 -4,-0.0 -0.368 89.6 -79.8 -79.6 168.1 4.3 -5.0 9.6 49 198 A Q >> - 0 0 67 -39,-0.1 4,-2.7 1,-0.1 3,-0.7 -0.330 48.6-105.5 -63.0 152.8 0.9 -6.5 8.8 50 199 A P H 3> S+ 0 0 70 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.843 119.0 53.1 -55.9 -39.0 0.6 -10.2 9.6 51 200 A D H 3> S+ 0 0 135 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.884 113.3 44.8 -64.4 -37.3 0.8 -11.4 6.0 52 201 A I H <> S+ 0 0 20 -3,-0.7 4,-3.0 2,-0.2 5,-0.2 0.902 109.2 55.3 -72.8 -41.5 4.0 -9.4 5.5 53 202 A Q H X S+ 0 0 66 -4,-2.7 4,-1.9 1,-0.2 -2,-0.2 0.927 109.6 48.4 -51.8 -44.6 5.4 -10.6 8.9 54 203 A Q H < S+ 0 0 97 -4,-2.3 4,-0.4 -5,-0.2 -1,-0.2 0.873 111.1 49.1 -67.0 -37.2 4.9 -14.1 7.6 55 204 A L H >< S+ 0 0 41 -4,-1.7 3,-1.6 1,-0.2 4,-0.4 0.928 107.9 54.6 -66.9 -43.3 6.5 -13.4 4.3 56 205 A I H >< S+ 0 0 12 -4,-3.0 3,-1.9 1,-0.3 -2,-0.2 0.891 100.5 59.3 -58.0 -38.3 9.6 -11.8 6.0 57 206 A R T 3< S+ 0 0 190 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.660 97.1 62.1 -73.6 -7.6 10.2 -14.9 8.1 58 207 A T T < S+ 0 0 86 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.554 80.1 113.5 -79.8 -14.2 10.6 -17.0 4.9 59 208 A A S < S- 0 0 21 -3,-1.9 10,-0.0 -4,-0.4 -3,-0.0 -0.254 76.9-101.1 -62.1 148.0 13.6 -14.9 3.9 60 209 A P > - 0 0 64 0, 0.0 3,-1.9 0, 0.0 -1,-0.1 -0.289 26.7-113.9 -70.1 158.3 17.0 -16.7 3.8 61 210 A S T 3 S+ 0 0 118 1,-0.3 -2,-0.1 3,-0.0 0, 0.0 0.698 112.3 69.7 -63.2 -20.1 19.4 -16.2 6.7 62 211 A T T 3 S+ 0 0 104 1,-0.1 2,-0.9 2,-0.0 -1,-0.3 0.698 78.7 85.7 -73.0 -18.5 21.8 -14.4 4.2 63 212 A L < + 0 0 49 -3,-1.9 -1,-0.1 1,-0.2 -4,-0.0 -0.709 47.8 146.3 -89.7 109.0 19.4 -11.4 3.9 64 213 A T + 0 0 96 -2,-0.9 -1,-0.2 5,-0.0 -23,-0.1 0.684 39.3 79.4-120.9 -18.5 20.4 -9.2 6.8 65 214 A T S > S- 0 0 58 1,-0.1 4,-2.1 -24,-0.0 5,-0.2 -0.582 79.1-117.5 -97.7 159.1 19.9 -5.6 5.8 66 215 A P H > S+ 0 0 22 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.923 116.1 52.8 -54.4 -44.6 16.7 -3.5 5.7 67 216 A G H > S+ 0 0 35 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.882 106.4 52.2 -62.4 -37.7 17.2 -3.0 1.9 68 217 A E H > S+ 0 0 61 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.892 111.9 46.3 -63.9 -40.0 17.5 -6.7 1.3 69 218 A I H X S+ 0 0 11 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.903 110.5 53.0 -70.2 -38.7 14.3 -7.3 3.2 70 219 A I H X S+ 0 0 30 -4,-2.7 4,-2.9 1,-0.2 5,-0.3 0.946 112.5 44.4 -58.7 -49.0 12.5 -4.5 1.4 71 220 A K H X S+ 0 0 126 -4,-2.4 4,-2.6 1,-0.2 -1,-0.2 0.905 110.7 55.4 -62.5 -39.9 13.5 -6.0 -2.0 72 221 A Y H < S+ 0 0 24 -4,-2.2 4,-0.4 -5,-0.2 -1,-0.2 0.943 114.4 39.4 -56.8 -49.8 12.6 -9.5 -0.8 73 222 A V H >< S+ 0 0 0 -4,-2.5 3,-1.4 1,-0.2 4,-0.3 0.959 117.7 46.1 -64.5 -53.2 9.1 -8.4 0.1 74 223 A L H >< S+ 0 0 71 -4,-2.9 3,-1.6 1,-0.3 -2,-0.2 0.895 108.4 56.3 -64.4 -36.8 8.4 -6.1 -2.9 75 224 A D T 3< S+ 0 0 120 -4,-2.6 -1,-0.3 -5,-0.3 -2,-0.2 0.606 104.9 54.7 -70.8 -11.6 9.8 -8.7 -5.4 76 225 A R T < 0 0 126 -3,-1.4 -1,-0.3 -4,-0.4 -2,-0.2 0.335 360.0 360.0-104.4 5.7 7.3 -11.2 -4.1 77 226 A Q < 0 0 175 -3,-1.6 -1,-0.2 -4,-0.3 -2,-0.1 0.536 360.0 360.0 -83.9 360.0 4.2 -9.0 -4.7