==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 30-JAN-09 3G27 . COMPND 2 MOLECULE: 82 PROPHAGE-DERIVED UNCHARACTERIZED PROTEIN YBCO; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; . AUTHOR M.E.CUFF,E.EVDOKIMOVA,M.KUDRITSKA,A.EDWARDS,A.SAVCHENKO,A.JO . 81 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4578.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 59.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 30.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A R 0 0 53 0, 0.0 81,-0.0 0, 0.0 80,-0.0 0.000 360.0 360.0 360.0 -30.2 -1.5 17.5 4.0 2 6 A K > + 0 0 134 1,-0.3 2,-1.3 2,-0.1 3,-0.6 0.653 360.0 88.9 -60.3 -13.5 -3.7 20.6 3.6 3 7 A A T 3 + 0 0 87 1,-0.2 -1,-0.3 22,-0.1 22,-0.1 -0.505 48.8 106.1 -77.3 58.8 -4.5 19.7 7.3 4 8 A A T > + 0 0 0 -2,-1.3 3,-1.8 20,-0.1 -1,-0.2 0.139 48.9 128.7-103.6 1.2 -1.4 21.9 8.3 5 9 A R T < S+ 0 0 73 -3,-0.6 20,-0.2 1,-0.3 17,-0.1 -0.348 71.0 17.3 -60.2 134.8 -4.1 24.3 9.5 6 10 A G T 3 S+ 0 0 50 15,-0.8 -1,-0.3 18,-0.6 2,-0.2 0.538 99.1 120.0 77.8 5.8 -3.5 25.4 13.1 7 11 A R S < S- 0 0 103 -3,-1.8 -1,-0.3 14,-0.2 17,-0.2 -0.628 73.9 -82.7 -92.5 164.2 0.1 24.3 13.2 8 12 A E - 0 0 123 -2,-0.2 32,-0.1 1,-0.1 -1,-0.1 -0.355 48.6-101.8 -64.8 138.5 3.1 26.5 13.8 9 13 A C - 0 0 5 1,-0.1 32,-0.2 -2,-0.1 -1,-0.1 -0.398 29.3-169.4 -60.6 130.8 4.5 28.5 10.9 10 14 A Q S S+ 0 0 18 30,-1.9 61,-0.2 -2,-0.1 31,-0.2 0.442 80.2 61.8 -99.3 -3.7 7.7 26.9 9.5 11 15 A V + 0 0 3 29,-0.4 30,-0.1 57,-0.1 56,-0.1 0.916 69.7 175.2 -87.6 -53.4 8.7 29.8 7.4 12 16 A R - 0 0 107 1,-0.2 3,-0.0 4,-0.1 29,-0.0 0.854 9.3-170.1 51.4 52.6 9.1 32.4 10.2 13 17 A I > - 0 0 0 1,-0.1 4,-3.1 2,-0.1 -1,-0.2 -0.578 36.2-105.8 -68.1 123.6 10.5 35.4 8.3 14 18 A P T 4 S+ 0 0 87 0, 0.0 2,-2.2 0, 0.0 -1,-0.1 -0.244 96.8 1.2 -55.2 140.2 11.5 37.8 11.0 15 19 A G T 4 S+ 0 0 84 1,-0.2 -2,-0.1 2,-0.1 -3,-0.0 -0.408 127.2 66.4 83.6 -60.5 9.2 40.7 11.5 16 20 A V T 4 S+ 0 0 21 -2,-2.2 -1,-0.2 28,-0.1 28,-0.1 0.884 80.8 90.7 -58.3 -45.4 6.9 39.5 8.8 17 21 A C < - 0 0 34 -4,-3.1 -2,-0.1 1,-0.2 26,-0.0 -0.244 58.2-162.3 -54.4 137.6 5.8 36.4 10.7 18 22 A N - 0 0 67 2,-0.1 -1,-0.2 5,-0.0 -2,-0.0 0.580 23.1-143.1 -92.5 -14.0 2.8 36.8 12.9 19 23 A G + 0 0 50 1,-0.2 -2,-0.1 2,-0.1 5,-0.0 0.670 55.7 132.2 64.4 17.5 3.6 33.6 14.9 20 24 A N > - 0 0 55 1,-0.1 3,-2.4 -12,-0.0 23,-0.3 -0.852 42.8-164.7-110.3 101.3 -0.1 32.8 15.2 21 25 A P G > S+ 0 0 47 0, 0.0 3,-1.7 0, 0.0 -15,-0.8 0.740 83.7 72.7 -61.0 -23.0 -0.8 29.2 14.3 22 26 A E G 3 S+ 0 0 155 1,-0.3 -16,-0.1 -16,-0.2 -15,-0.1 0.777 98.4 49.9 -58.0 -25.8 -4.5 29.8 13.9 23 27 A T G < S+ 0 0 35 -3,-2.4 -1,-0.3 -18,-0.1 18,-0.1 0.466 86.7 123.4 -91.4 1.2 -3.6 31.6 10.6 24 28 A S < + 0 0 3 -3,-1.7 -18,-0.6 -4,-0.2 2,-0.3 -0.347 31.5 167.5 -73.6 140.9 -1.5 28.8 9.3 25 29 A V E -A 41 0A 58 16,-2.8 16,-2.3 -20,-0.2 2,-0.9 -0.906 47.2 -91.8-136.1 169.9 -2.2 27.2 5.9 26 30 A L E -A 40 0A 15 -24,-0.3 2,-0.7 -2,-0.3 14,-0.2 -0.766 46.7-163.5 -80.5 106.1 -0.4 24.8 3.5 27 31 A A E -A 39 0A 0 12,-3.7 12,-2.7 -2,-0.9 2,-0.1 -0.857 12.7-133.1-100.5 114.2 1.4 27.3 1.3 28 32 A H E -A 38 0A 29 -2,-0.7 2,-0.4 10,-0.3 10,-0.3 -0.384 14.6-126.0 -67.2 139.3 2.6 25.8 -2.0 29 33 A I 0 0 22 8,-2.7 -1,-0.1 5,-0.3 8,-0.1 -0.739 360.0 360.0 -87.1 134.9 6.1 26.6 -3.1 30 34 A R 0 0 221 -2,-0.4 -1,-0.0 3,-0.0 8,-0.0 -0.716 360.0 360.0 -98.0 360.0 6.2 28.1 -6.7 31 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 44 A K 0 0 150 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 62.1 -1.9 22.7 -9.8 33 45 A P - 0 0 59 0, 0.0 -5,-0.1 0, 0.0 -3,-0.0 -0.392 360.0 -97.5 -77.6 153.0 1.4 22.2 -7.8 34 46 A P - 0 0 76 0, 0.0 3,-0.5 0, 0.0 -5,-0.3 -0.292 19.6-129.0 -73.4 149.2 1.7 19.2 -5.4 35 47 A D S S+ 0 0 46 1,-0.2 3,-0.3 -7,-0.1 -8,-0.0 0.665 106.7 66.3 -70.9 -22.4 1.0 19.5 -1.6 36 48 A L S S+ 0 0 82 1,-0.2 2,-2.1 -8,-0.0 -1,-0.2 0.916 93.5 61.5 -57.8 -44.8 4.4 17.9 -0.9 37 49 A I S S+ 0 0 58 -3,-0.5 -8,-2.7 -8,-0.1 2,-0.3 -0.432 95.8 89.1 -86.5 65.3 6.0 20.9 -2.4 38 50 A A E -A 28 0A 0 -2,-2.1 2,-0.3 -3,-0.3 -10,-0.3 -0.959 61.1-141.2-155.8 159.5 4.5 23.2 0.2 39 51 A T E -A 27 0A 0 -12,-2.7 -12,-3.7 -2,-0.3 2,-0.4 -0.949 27.7-109.5-127.7 150.9 5.2 24.7 3.7 40 52 A I E +A 26 0A 0 28,-0.4 -30,-1.9 -2,-0.3 -29,-0.4 -0.682 51.6 173.7 -70.0 128.5 3.0 25.5 6.7 41 53 A A E -A 25 0A 0 -16,-2.3 -16,-2.8 -2,-0.4 -34,-0.1 -0.995 32.0-123.9-145.7 137.1 2.9 29.2 6.7 42 54 A C > - 0 0 0 -2,-0.4 4,-2.7 -18,-0.3 5,-0.2 -0.313 45.2 -95.3 -68.5 165.3 1.1 31.9 8.8 43 55 A S H > S+ 0 0 49 -23,-0.3 4,-1.9 1,-0.2 5,-0.1 0.841 123.8 47.3 -57.6 -38.1 -1.0 34.3 6.8 44 56 A A H > S+ 0 0 26 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.909 113.2 45.6 -70.0 -48.5 1.8 37.0 6.8 45 57 A C H > S+ 0 0 0 2,-0.2 4,-3.0 1,-0.2 5,-0.3 0.896 110.6 56.0 -65.5 -36.4 4.6 34.7 5.7 46 58 A H H X S+ 0 0 41 -4,-2.7 4,-2.0 2,-0.2 6,-0.2 0.955 107.9 46.9 -59.4 -50.4 2.3 33.2 3.1 47 59 A D H <>S+ 0 0 60 -4,-1.9 5,-2.1 1,-0.2 6,-1.4 0.896 115.9 47.2 -60.4 -36.5 1.6 36.6 1.5 48 60 A E H ><5S+ 0 0 0 -4,-1.9 3,-1.0 4,-0.2 -2,-0.2 0.907 110.1 48.9 -71.9 -44.8 5.4 37.4 1.6 49 61 A I H 3<5S+ 0 0 21 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.842 112.9 49.5 -67.8 -30.4 6.6 34.1 0.1 50 62 A D T 3<5S- 0 0 24 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.526 115.1-121.0 -78.9 -7.3 4.0 34.5 -2.7 51 63 A R T < 5S+ 0 0 89 -3,-1.0 -3,-0.2 -4,-0.3 -2,-0.1 0.633 78.9 126.5 69.6 20.3 5.3 38.1 -3.2 52 64 A R S - 0 0 117 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.228 41.0-126.6 -49.1 136.4 14.4 40.6 -0.2 58 70 A A H > S+ 0 0 56 1,-0.2 4,-1.9 2,-0.2 -1,-0.1 0.795 108.5 53.6 -65.8 -32.7 13.0 37.9 -2.6 59 71 A G H > S+ 0 0 46 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.923 111.5 45.6 -65.3 -43.5 16.0 35.6 -2.2 60 72 A Y H > S+ 0 0 93 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.935 111.6 51.0 -65.6 -46.7 15.7 35.7 1.5 61 73 A A H X S+ 0 0 1 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.921 112.3 48.7 -52.4 -44.4 11.9 35.0 1.4 62 74 A K H X S+ 0 0 48 -4,-1.9 4,-2.3 2,-0.2 5,-0.3 0.926 109.0 51.6 -65.3 -48.8 12.6 32.1 -1.0 63 75 A E H X S+ 0 0 111 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.948 113.0 45.1 -50.2 -51.0 15.3 30.7 1.3 64 76 A C H X S+ 0 0 6 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.887 111.5 53.5 -62.1 -39.8 12.8 30.9 4.3 65 77 A A H X S+ 0 0 7 -4,-2.5 4,-2.0 -5,-0.2 -1,-0.2 0.923 113.1 41.9 -58.2 -47.6 10.0 29.4 2.2 66 78 A L H X S+ 0 0 80 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.889 112.3 53.2 -76.0 -39.4 12.0 26.3 1.2 67 79 A E H X S+ 0 0 87 -4,-2.5 4,-2.2 -5,-0.3 -1,-0.2 0.896 110.3 50.7 -54.6 -42.3 13.5 25.9 4.6 68 80 A G H X S+ 0 0 0 -4,-2.2 4,-2.6 -5,-0.2 -28,-0.4 0.874 106.6 53.7 -63.5 -40.7 9.9 25.9 5.8 69 81 A X H X S+ 0 0 40 -4,-2.0 4,-2.5 2,-0.2 5,-0.2 0.912 109.2 48.0 -58.5 -46.4 9.1 23.3 3.2 70 82 A A H X S+ 0 0 50 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.912 112.7 48.3 -64.6 -43.9 11.9 21.0 4.5 71 83 A R H X S+ 0 0 75 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.924 111.9 50.4 -59.7 -45.9 10.7 21.5 8.1 72 84 A T H X S+ 0 0 0 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.902 110.7 47.4 -56.8 -48.7 7.1 20.7 7.1 73 85 A Q H X S+ 0 0 48 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.882 110.4 53.6 -62.9 -36.8 8.0 17.5 5.3 74 86 A V H X S+ 0 0 80 -4,-2.1 4,-2.2 -5,-0.2 -2,-0.2 0.899 108.5 49.1 -65.8 -38.9 10.1 16.6 8.3 75 87 A I H X S+ 0 0 34 -4,-2.2 4,-2.9 2,-0.2 6,-0.3 0.927 110.1 51.4 -59.6 -46.8 7.0 17.1 10.4 76 88 A W H <>S+ 0 0 2 -4,-2.5 6,-1.7 2,-0.2 5,-1.3 0.843 109.4 51.5 -58.7 -38.9 4.9 15.0 8.0 77 89 A L H ><5S+ 0 0 97 -4,-2.1 3,-1.5 4,-0.2 -2,-0.2 0.989 113.3 42.1 -61.2 -61.0 7.6 12.2 8.3 78 90 A K H 3<5S+ 0 0 186 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.888 115.3 50.3 -52.2 -47.5 7.6 12.2 12.1 79 91 A E T 3<5S- 0 0 57 -4,-2.9 -1,-0.3 -5,-0.2 -2,-0.2 0.470 112.0-115.8 -75.8 -2.7 3.7 12.4 12.4 80 92 A G T < 5S+ 0 0 61 -3,-1.5 -3,-0.2 -4,-0.4 -4,-0.1 0.523 81.4 124.3 78.1 6.9 3.1 9.5 9.9 81 93 A V < 0 0 68 -5,-1.3 -4,-0.2 -6,-0.3 -5,-0.1 0.898 360.0 360.0 -65.2 -43.6 1.4 11.9 7.4 82 94 A I 0 0 96 -6,-1.7 -2,-0.2 -9,-0.2 0, 0.0 -0.721 360.0 360.0-126.5 360.0 3.9 10.8 4.7