==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-JAN-09 3G28 . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; . AUTHOR R.L.KINGSTON . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4880.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 150 A A 0 0 115 0, 0.0 24,-0.1 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0-111.5 -12.3 -13.6 15.6 2 151 A G - 0 0 31 19,-0.1 2,-1.6 1,-0.1 3,-0.1 -0.463 360.0-101.7 -73.1 149.6 -9.5 -11.0 15.3 3 152 A P > - 0 0 81 0, 0.0 3,-2.2 0, 0.0 4,-0.5 -0.573 40.5-165.8 -74.9 96.0 -9.0 -8.6 18.1 4 153 A W G > S+ 0 0 70 -2,-1.6 3,-0.9 1,-0.3 22,-0.1 0.785 80.2 57.4 -57.3 -31.6 -10.7 -5.8 16.3 5 154 A A G 3 S+ 0 0 52 1,-0.2 -1,-0.3 -3,-0.1 17,-0.0 0.522 103.8 54.7 -81.3 -2.2 -9.4 -3.0 18.7 6 155 A D G < S+ 0 0 116 -3,-2.2 2,-0.4 2,-0.0 -1,-0.2 0.475 80.5 113.7 -99.1 -9.1 -5.8 -4.0 18.0 7 156 A I < + 0 0 13 -3,-0.9 2,-0.3 -4,-0.5 -3,-0.0 -0.507 37.0 162.1 -79.6 126.6 -6.0 -3.7 14.2 8 157 A M - 0 0 113 -2,-0.4 2,-0.3 38,-0.0 40,-0.2 -0.993 45.7 -97.2-141.6 147.7 -3.9 -0.9 12.7 9 158 A Q - 0 0 15 38,-2.6 6,-0.1 -2,-0.3 5,-0.0 -0.471 43.6-136.2 -67.6 121.9 -2.7 -0.2 9.2 10 159 A G > - 0 0 20 -2,-0.3 3,-1.2 4,-0.1 39,-0.1 -0.291 20.9-107.1 -77.0 166.5 0.9 -1.4 8.9 11 160 A P T 3 S+ 0 0 124 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.715 121.7 36.9 -68.9 -21.5 3.7 0.5 7.1 12 161 A S T 3 S+ 0 0 125 2,-0.1 2,-0.3 0, 0.0 -3,-0.0 0.310 99.7 102.1-107.2 6.9 3.7 -1.8 4.1 13 162 A E < - 0 0 40 -3,-1.2 2,-0.1 1,-0.0 -4,-0.0 -0.724 68.1-128.5 -99.9 136.5 -0.1 -2.4 4.1 14 163 A S > - 0 0 51 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.408 26.4-113.6 -72.5 156.9 -2.6 -0.7 1.7 15 164 A F H > S+ 0 0 11 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.915 117.1 52.2 -56.9 -43.1 -5.6 1.1 3.1 16 165 A V H > S+ 0 0 48 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.889 107.5 51.2 -65.3 -36.7 -7.9 -1.5 1.5 17 166 A D H > S+ 0 0 85 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.931 113.4 45.4 -64.8 -42.5 -6.1 -4.4 3.1 18 167 A F H X S+ 0 0 0 -4,-2.2 4,-2.8 2,-0.2 5,-0.2 0.927 112.2 51.2 -62.6 -46.5 -6.3 -2.8 6.5 19 168 A A H X S+ 0 0 0 -4,-3.1 4,-2.8 1,-0.2 5,-0.2 0.914 110.2 50.2 -58.6 -41.2 -10.0 -1.9 6.0 20 169 A N H X S+ 0 0 95 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.912 111.8 46.8 -65.3 -42.7 -10.7 -5.6 5.0 21 170 A R H X S+ 0 0 103 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.921 115.1 47.1 -60.9 -48.3 -8.9 -6.9 8.1 22 171 A L H X S+ 0 0 0 -4,-2.8 4,-2.6 2,-0.2 -2,-0.2 0.930 113.9 46.1 -60.3 -48.9 -10.7 -4.5 10.4 23 172 A I H X S+ 0 0 39 -4,-2.8 4,-2.8 -5,-0.2 5,-0.2 0.902 110.4 53.1 -67.1 -39.9 -14.1 -5.1 8.9 24 173 A K H X S+ 0 0 163 -4,-2.4 4,-1.8 -5,-0.2 -1,-0.2 0.943 112.6 46.3 -56.3 -46.2 -13.6 -8.9 9.0 25 174 A A H < S+ 0 0 4 -4,-2.2 4,-0.4 2,-0.2 -21,-0.3 0.894 113.1 47.9 -63.3 -44.3 -12.7 -8.6 12.7 26 175 A V H >< S+ 0 0 0 -4,-2.6 3,-1.0 1,-0.2 5,-0.3 0.925 112.2 49.3 -65.2 -41.3 -15.7 -6.3 13.5 27 176 A E H 3< S+ 0 0 94 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.818 113.9 46.2 -68.9 -29.0 -18.1 -8.5 11.7 28 177 A G T 3< S+ 0 0 43 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.403 100.7 96.9 -87.5 -2.4 -16.8 -11.6 13.5 29 178 A S S < S- 0 0 23 -3,-1.0 -3,-0.1 -4,-0.4 -27,-0.0 -0.168 86.7-108.8 -84.9 178.2 -16.9 -9.8 16.9 30 179 A N S S+ 0 0 146 2,-0.0 -1,-0.1 -2,-0.0 -3,-0.1 0.295 73.5 127.1 -85.3 9.3 -19.4 -9.7 19.7 31 180 A L S S- 0 0 31 -5,-0.3 5,-0.1 1,-0.1 -2,-0.0 -0.384 71.3-100.5 -68.9 145.8 -20.4 -6.1 19.0 32 181 A P >> - 0 0 77 0, 0.0 3,-1.7 0, 0.0 4,-0.8 -0.342 36.1-113.4 -57.2 143.1 -24.1 -5.3 18.5 33 182 A P H >> S+ 0 0 93 0, 0.0 3,-1.1 0, 0.0 4,-0.5 0.873 116.9 53.5 -47.7 -42.9 -25.0 -5.1 14.8 34 183 A S H 34 S+ 0 0 108 1,-0.3 -3,-0.0 2,-0.2 3,-0.0 0.647 103.1 58.0 -72.4 -15.9 -25.8 -1.3 15.1 35 184 A A H <> S+ 0 0 26 -3,-1.7 4,-2.2 1,-0.1 -1,-0.3 0.664 88.5 79.8 -81.3 -18.4 -22.3 -0.7 16.7 36 185 A R H S+ 0 0 68 0, 0.0 4,-2.4 0, 0.0 -1,-0.2 0.906 113.4 49.5 -63.4 -36.4 -19.6 3.5 13.9 39 188 A V H X S+ 0 0 28 -4,-2.2 4,-2.5 2,-0.2 5,-0.2 0.923 111.7 48.7 -63.1 -43.9 -16.8 1.4 15.2 40 189 A I H X S+ 0 0 6 -4,-2.9 4,-2.6 -5,-0.2 5,-0.2 0.937 111.5 49.5 -60.3 -47.2 -15.5 0.8 11.7 41 190 A I H X S+ 0 0 21 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.921 113.8 45.8 -59.3 -46.3 -15.6 4.6 10.9 42 191 A D H X S+ 0 0 69 -4,-2.4 4,-2.3 -5,-0.2 -1,-0.2 0.884 111.5 50.5 -67.6 -38.4 -13.8 5.4 14.1 43 192 A C H X S+ 0 0 14 -4,-2.5 4,-2.7 2,-0.2 5,-0.3 0.885 109.7 51.8 -70.2 -32.5 -11.1 2.7 13.6 44 193 A F H X S+ 0 0 0 -4,-2.6 4,-0.9 -5,-0.2 -2,-0.2 0.944 113.4 45.7 -60.8 -45.6 -10.6 4.1 10.1 45 194 A R H < S+ 0 0 140 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.871 126.8 27.0 -64.8 -38.1 -10.2 7.6 11.5 46 195 A Q H < S+ 0 0 126 -4,-2.3 -2,-0.2 -5,-0.1 -1,-0.2 0.724 123.3 42.2-100.6 -24.2 -7.8 6.5 14.3 47 196 A K H < S+ 0 0 42 -4,-2.7 -38,-2.6 -5,-0.2 -3,-0.2 0.391 85.6 97.2-117.8 -0.7 -6.0 3.4 13.2 48 197 A S S < S- 0 0 4 -4,-0.9 5,-0.1 -5,-0.3 -33,-0.0 -0.306 93.3 -70.6 -74.6 171.7 -5.0 4.0 9.6 49 198 A Q > - 0 0 68 -39,-0.1 4,-2.5 1,-0.1 3,-0.5 -0.290 53.4-106.2 -61.5 150.8 -1.5 5.3 8.8 50 199 A P H > S+ 0 0 79 0, 0.0 4,-2.0 0, 0.0 5,-0.1 0.856 119.6 50.5 -53.8 -38.9 -1.0 8.9 9.8 51 200 A D H > S+ 0 0 138 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.890 111.5 48.6 -65.5 -39.4 -1.2 10.4 6.3 52 201 A I H > S+ 0 0 20 -3,-0.5 4,-3.1 2,-0.2 5,-0.2 0.890 106.0 57.6 -66.9 -36.5 -4.4 8.5 5.6 53 202 A Q H X S+ 0 0 44 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.932 108.4 47.6 -55.0 -46.2 -5.9 9.8 9.0 54 203 A Q H X S+ 0 0 108 -4,-2.0 4,-0.8 -5,-0.2 -2,-0.2 0.914 111.4 49.7 -61.9 -43.6 -5.2 13.3 7.6 55 204 A L H >X S+ 0 0 39 -4,-2.1 3,-1.1 1,-0.2 4,-0.5 0.926 108.3 52.7 -63.6 -43.5 -6.9 12.4 4.3 56 205 A I H >< S+ 0 0 11 -4,-3.1 3,-1.6 1,-0.3 -1,-0.2 0.896 101.4 61.3 -58.9 -38.5 -9.9 11.0 6.0 57 206 A R H 3< S+ 0 0 177 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.746 97.7 59.8 -60.1 -26.0 -10.3 14.2 8.0 58 207 A T H << S+ 0 0 86 -3,-1.1 -1,-0.3 -4,-0.8 -2,-0.2 0.684 79.7 104.2 -75.7 -18.6 -10.8 16.1 4.7 59 208 A A S << S- 0 0 16 -3,-1.6 10,-0.0 -4,-0.5 -3,-0.0 -0.449 79.8-113.5 -67.9 133.1 -13.8 14.1 3.7 60 209 A P > - 0 0 72 0, 0.0 3,-2.3 0, 0.0 -1,-0.1 -0.189 25.1-106.0 -63.8 159.6 -17.0 16.2 4.2 61 210 A S T 3 S+ 0 0 114 1,-0.3 -2,-0.1 3,-0.0 0, 0.0 0.613 114.0 76.2 -62.3 -12.4 -19.6 15.2 6.9 62 211 A T T 3 S+ 0 0 107 1,-0.1 2,-1.0 2,-0.1 -1,-0.3 0.667 77.0 81.6 -72.9 -17.6 -21.8 14.0 4.0 63 212 A L < + 0 0 50 -3,-2.3 -1,-0.1 1,-0.2 -4,-0.0 -0.810 53.8 150.8 -89.9 104.1 -19.6 10.9 3.7 64 213 A T + 0 0 95 -2,-1.0 -1,-0.2 5,-0.0 -23,-0.1 0.597 40.1 75.2-113.2 -16.5 -21.0 8.8 6.5 65 214 A T S > S- 0 0 57 1,-0.1 4,-2.1 -24,-0.0 5,-0.2 -0.689 77.3-121.2-104.7 155.0 -20.5 5.1 5.5 66 215 A P H > S+ 0 0 23 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.918 115.1 53.8 -54.5 -41.7 -17.4 2.9 5.5 67 216 A G H > S+ 0 0 37 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.885 106.6 52.0 -61.7 -38.6 -17.8 2.3 1.8 68 217 A E H > S+ 0 0 60 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.918 112.1 45.9 -63.9 -39.6 -17.9 6.0 1.1 69 218 A I H X S+ 0 0 10 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.891 110.4 52.9 -72.8 -36.7 -14.7 6.5 3.0 70 219 A I H X S+ 0 0 32 -4,-2.6 4,-2.6 2,-0.2 5,-0.3 0.947 112.1 44.9 -61.7 -49.9 -13.0 3.6 1.3 71 220 A K H X S+ 0 0 127 -4,-2.3 4,-2.3 1,-0.2 -1,-0.2 0.903 112.1 54.9 -57.9 -41.6 -13.8 5.0 -2.2 72 221 A Y H < S+ 0 0 26 -4,-2.2 4,-0.4 -5,-0.2 -2,-0.2 0.942 113.5 39.3 -58.9 -51.5 -12.7 8.4 -0.9 73 222 A V H >< S+ 0 0 1 -4,-2.5 3,-1.3 1,-0.2 4,-0.2 0.955 117.7 46.8 -63.9 -52.3 -9.3 7.2 0.1 74 223 A L H >< S+ 0 0 68 -4,-2.6 3,-1.4 1,-0.3 -2,-0.2 0.884 109.5 53.2 -61.4 -39.4 -8.6 4.9 -2.7 75 224 A D T 3< S+ 0 0 121 -4,-2.3 -1,-0.3 -5,-0.3 -2,-0.2 0.537 104.4 57.4 -77.1 -6.0 -9.7 7.3 -5.5 76 225 A R T < 0 0 128 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.328 360.0 360.0-105.9 6.2 -7.3 10.0 -4.1 77 226 A Q < 0 0 176 -3,-1.4 -1,-0.2 -4,-0.2 -2,-0.1 0.569 360.0 360.0 -79.7 360.0 -4.2 7.9 -4.5