==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-OCT-00 1G4F . COMPND 2 MOLECULE: BETA2-GLYCOPROTEIN I; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.HOSHINO,Y.HAGIHARA,I.NISHII,T.YAMAZAKI,H.KATO,Y.GOTO . 86 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6685.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 25.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A T 0 0 174 0, 0.0 2,-0.7 0, 0.0 57,-0.0 0.000 360.0 360.0 360.0 22.6 23.6 -6.4 -7.5 2 2 A K - 0 0 162 31,-0.1 31,-0.1 56,-0.0 55,-0.0 -0.808 360.0-171.1 -95.7 117.0 20.2 -5.9 -5.8 3 3 A A - 0 0 36 -2,-0.7 30,-1.5 29,-0.1 2,-0.3 -0.011 20.7-106.2 -88.2-160.8 19.3 -2.2 -5.3 4 4 A S B -A 32 0A 57 28,-0.2 28,-0.3 54,-0.1 -1,-0.1 -0.840 20.6-128.5-127.1 166.2 16.4 -0.7 -3.3 5 5 A a - 0 0 5 26,-4.2 2,-0.4 -2,-0.3 55,-0.1 -0.200 22.5-114.6 -99.4-164.5 13.1 1.0 -4.2 6 6 A K - 0 0 171 24,-0.3 22,-0.1 -2,-0.1 55,-0.1 -0.935 31.1-105.5-140.4 117.2 11.6 4.3 -3.0 7 7 A L - 0 0 29 20,-0.6 17,-0.0 -2,-0.4 23,-0.0 -0.124 29.9-158.3 -40.8 101.4 8.4 4.6 -1.0 8 8 A P S S+ 0 0 60 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.600 75.1 44.4 -63.6 -9.3 6.2 5.9 -3.7 9 9 A V - 0 0 9 3,-0.1 3,-0.2 1,-0.1 60,-0.0 -0.950 68.1-144.5-135.1 156.8 3.9 7.4 -1.0 10 10 A K S S+ 0 0 123 -2,-0.3 -1,-0.1 1,-0.2 -3,-0.0 0.421 104.5 22.7 -98.6 1.7 4.5 9.3 2.3 11 11 A K S S+ 0 0 127 14,-0.0 2,-0.4 13,-0.0 -1,-0.2 -0.040 82.6 143.4-157.2 41.3 1.6 7.5 4.0 12 12 A A - 0 0 0 -3,-0.2 11,-1.4 55,-0.0 12,-0.6 -0.697 35.0-151.2 -89.6 138.4 0.9 4.2 2.3 13 13 A T E +B 22 0B 25 -2,-0.4 27,-1.0 9,-0.2 9,-0.2 -0.917 24.1 163.7-112.3 119.5 -0.1 1.2 4.4 14 14 A V E -BC 21 39B 2 7,-1.6 7,-1.9 -2,-0.6 2,-0.6 -0.673 40.7-112.5-123.0-179.8 0.9 -2.3 3.2 15 15 A V E > -BC 20 38B 28 23,-1.8 3,-0.8 -2,-0.2 2,-0.6 -0.732 33.7-178.4-117.8 85.0 1.1 -5.8 4.7 16 16 A Y E > S-B 19 0B 58 3,-1.5 3,-0.6 -2,-0.6 21,-0.1 -0.708 76.7 -12.1 -85.6 121.9 4.8 -6.9 4.8 17 17 A Q T 3 S- 0 0 148 -2,-0.6 -1,-0.3 19,-0.5 3,-0.1 0.897 132.2 -52.9 59.3 38.1 5.2 -10.4 6.2 18 18 A G T < S+ 0 0 62 -3,-0.8 2,-0.4 1,-0.2 -1,-0.2 0.806 116.8 119.7 69.0 25.6 1.6 -10.4 7.4 19 19 A E E < -B 16 0B 114 -3,-0.6 -3,-1.5 2,-0.0 2,-0.5 -0.974 60.6-135.2-126.4 136.1 2.2 -7.1 9.2 20 20 A R E +B 15 0B 197 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.751 45.5 133.6 -90.5 125.8 0.5 -3.7 8.6 21 21 A V E -B 14 0B 47 -7,-1.9 -7,-1.6 -2,-0.5 2,-0.7 -0.882 57.2 -88.0-153.7-175.1 2.9 -0.7 8.5 22 22 A K E >>> -B 13 0B 72 -2,-0.3 3,-3.3 -9,-0.2 4,-1.6 -0.887 19.9-154.8-110.4 111.3 3.7 2.4 6.4 23 23 A I H 3>5S+ 0 0 1 -11,-1.4 4,-0.6 -2,-0.7 -16,-0.2 0.810 97.6 64.3 -52.1 -25.8 6.1 1.9 3.5 24 24 A Q H 345S+ 0 0 47 -12,-0.6 -1,-0.3 2,-0.1 6,-0.1 0.694 117.4 25.3 -72.9 -14.4 6.9 5.6 4.0 25 25 A E H X45S+ 0 0 123 -3,-3.3 3,-2.5 2,-0.1 4,-0.2 0.758 121.7 46.1-111.9 -66.1 8.3 4.8 7.4 26 26 A K H 3<5S+ 0 0 130 -4,-1.6 3,-0.3 1,-0.3 -3,-0.2 0.908 129.9 31.3 -46.8 -42.6 9.5 1.1 7.6 27 27 A F T >< -A 4 0A 106 -2,-0.3 3,-1.9 -28,-0.3 24,-0.2 -0.386 47.7 -91.7 -69.2 147.3 14.9 -3.6 -0.5 33 33 A H T 3 S+ 0 0 60 -30,-1.5 24,-0.2 1,-0.3 -1,-0.1 -0.307 114.7 18.7 -58.4 136.8 14.9 -5.3 -4.0 34 34 A G T 3 S+ 0 0 30 22,-4.2 -1,-0.3 1,-0.3 23,-0.1 0.186 85.8 153.3 87.5 -21.0 12.4 -8.2 -4.1 35 35 A D < - 0 0 7 -3,-1.9 21,-2.9 20,-0.2 2,-0.6 -0.132 33.7-150.1 -43.0 126.0 10.6 -6.8 -1.0 36 36 A K E + D 0 55B 118 19,-0.2 -19,-0.5 -3,-0.1 2,-0.4 -0.899 25.4 161.9-108.6 123.4 7.0 -8.0 -1.3 37 37 A V E - D 0 54B 1 17,-0.9 17,-1.4 -2,-0.6 2,-0.3 -0.998 26.5-141.3-140.2 139.5 4.3 -5.9 0.2 38 38 A S E -CD 15 53B 9 -23,-0.6 -23,-1.8 -2,-0.4 15,-0.3 -0.769 14.0-141.2-101.1 145.5 0.5 -5.9 -0.3 39 39 A F E -CD 14 52B 4 13,-1.3 13,-2.1 -2,-0.3 2,-0.4 -0.746 21.5-113.2-102.6 151.4 -1.6 -2.7 -0.5 40 40 A F E + D 0 51B 42 -27,-1.0 41,-0.4 -2,-0.3 2,-0.3 -0.674 45.5 159.6 -85.5 132.6 -5.2 -2.4 1.0 41 41 A b E - D 0 50B 4 9,-2.1 9,-1.7 -2,-0.4 2,-0.3 -0.850 30.5-122.3-140.2 176.3 -8.0 -1.9 -1.5 42 42 A K E - D 0 49B 68 -2,-0.3 2,-0.6 7,-0.3 7,-0.3 -0.914 9.5-141.0-125.7 153.8 -11.8 -2.4 -1.6 43 43 A N E >> - D 0 48B 56 5,-3.0 4,-2.4 -2,-0.3 5,-0.8 -0.903 7.4-169.9-116.2 109.0 -14.1 -4.4 -3.9 44 44 A K T 45S+ 0 0 132 -2,-0.6 -1,-0.1 1,-0.2 5,-0.1 0.700 91.2 54.1 -69.1 -14.9 -17.4 -2.8 -4.9 45 45 A E T 45S+ 0 0 159 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.862 121.7 25.7 -86.9 -37.7 -18.5 -6.1 -6.3 46 46 A K T 45S- 0 0 135 2,-0.2 -2,-0.2 -3,-0.0 -1,-0.1 0.582 99.3-131.0-100.0 -11.6 -17.9 -8.2 -3.2 47 47 A K T <5S+ 0 0 185 -4,-2.4 2,-0.3 1,-0.2 -3,-0.2 0.831 73.5 97.7 67.2 30.0 -18.3 -5.3 -0.7 48 48 A c E < -D 43 0B 13 -5,-0.8 -5,-3.0 35,-0.1 -1,-0.2 -0.903 68.8-117.3-140.9 170.7 -15.1 -6.2 1.1 49 49 A S E +De 42 85B 3 35,-2.3 37,-1.8 -2,-0.3 -7,-0.3 -0.683 29.4 171.4-108.4 165.4 -11.4 -5.2 1.1 50 50 A Y E -D 41 0B 76 -9,-1.7 -9,-2.1 -2,-0.2 2,-0.4 -0.845 30.7 -94.6-153.4-170.9 -8.3 -7.2 0.3 51 51 A T E -D 40 0B 57 -2,-0.2 2,-0.7 -11,-0.2 -11,-0.2 -0.929 16.0-150.7-121.4 145.2 -4.5 -6.8 -0.3 52 52 A E E -D 39 0B 79 -13,-2.1 -13,-1.3 -2,-0.4 -15,-0.1 -0.811 22.3-142.1-113.7 92.4 -2.5 -6.3 -3.5 53 53 A D E -D 38 0B 107 -2,-0.7 -15,-0.3 -15,-0.3 2,-0.3 -0.153 21.7-168.4 -51.3 144.5 0.9 -7.9 -3.0 54 54 A A E -D 37 0B 9 -17,-1.4 -17,-0.9 9,-0.1 2,-0.4 -0.812 13.0-140.0-129.8 171.4 3.7 -5.9 -4.7 55 55 A Q E -D 36 0B 100 -2,-0.3 7,-0.5 -19,-0.2 -19,-0.2 -0.930 10.6-139.2-140.8 118.7 7.4 -6.5 -5.5 56 56 A a E -F 61 0C 0 -21,-2.9 -22,-4.2 -2,-0.4 2,-0.2 -0.509 27.0-165.8 -73.2 137.3 10.3 -4.0 -5.2 57 57 A I E > -F 60 0C 60 3,-2.2 2,-1.4 -24,-0.2 3,-0.8 -0.672 43.5 -55.1-118.6 175.3 12.8 -4.3 -8.1 58 58 A D T 3 S- 0 0 84 1,-0.3 -54,-0.1 -2,-0.2 -53,-0.1 -0.211 119.0 -35.3 -50.5 87.3 16.3 -3.0 -8.7 59 59 A G T 3 S+ 0 0 45 -2,-1.4 2,-0.4 -28,-0.2 -1,-0.3 0.519 131.7 84.1 74.5 0.4 15.6 0.7 -8.0 60 60 A T E < +F 57 0C 88 -3,-0.8 -3,-2.2 -55,-0.1 2,-0.3 -0.991 50.1 177.2-138.0 145.6 12.1 0.4 -9.5 61 61 A I E -F 56 0C 36 -2,-0.4 2,-0.6 -5,-0.2 -5,-0.1 -0.997 20.9-145.5-144.7 148.1 8.7 -0.7 -8.2 62 62 A E - 0 0 165 -7,-0.5 -7,-0.2 -2,-0.3 3,-0.1 -0.767 18.8-155.3-117.1 89.8 5.2 -0.9 -9.7 63 63 A V - 0 0 53 -2,-0.6 2,-0.2 1,-0.1 -10,-0.1 -0.328 34.7 -95.7 -61.5 143.8 2.6 -0.2 -7.0 64 64 A P > - 0 0 20 0, 0.0 3,-1.5 0, 0.0 -1,-0.1 -0.388 25.6-130.1 -62.1 127.9 -0.8 -1.7 -7.8 65 65 A K T 3 S+ 0 0 201 1,-0.3 -2,-0.1 -2,-0.2 0, 0.0 0.819 101.1 81.8 -50.3 -26.5 -3.1 0.9 -9.5 66 66 A b T 3 S+ 0 0 41 2,-0.1 -1,-0.3 -27,-0.0 -24,-0.1 0.935 75.2 81.1 -45.5 -51.8 -5.7 -0.1 -6.9 67 67 A F < - 0 0 51 -3,-1.5 2,-0.4 1,-0.1 3,-0.1 -0.247 68.3-161.7 -55.7 141.4 -4.0 2.2 -4.4 68 68 A K - 0 0 86 1,-0.1 -1,-0.1 6,-0.0 -2,-0.1 -0.710 16.7-178.2-130.9 85.7 -5.1 5.8 -4.9 69 69 A E S S+ 0 0 119 -2,-0.4 2,-0.6 2,-0.0 -1,-0.1 0.761 75.4 74.1 -54.3 -19.0 -2.7 8.4 -3.3 70 70 A H - 0 0 133 1,-0.2 3,-0.2 -3,-0.1 -1,-0.0 -0.840 61.0-174.2 -99.9 124.8 -5.2 10.9 -4.6 71 71 A S + 0 0 77 -2,-0.6 2,-0.9 1,-0.2 3,-0.2 0.954 31.9 139.6 -81.0 -53.8 -8.6 11.2 -2.8 72 72 A S S S+ 0 0 90 1,-0.3 3,-0.2 2,-0.1 -1,-0.2 -0.180 90.3 4.7 47.3 -91.3 -10.4 13.6 -5.0 73 73 A L S S+ 0 0 130 -2,-0.9 -1,-0.3 -3,-0.2 -2,-0.1 -0.276 84.1 137.9-115.0 49.2 -13.8 11.8 -4.8 74 74 A A + 0 0 40 -3,-0.2 -1,-0.2 2,-0.0 -2,-0.1 0.897 31.2 164.3 -61.0 -36.9 -12.9 9.1 -2.3 75 75 A F + 0 0 169 -3,-0.2 3,-0.3 1,-0.1 -2,-0.0 0.063 32.0 77.1 45.8-166.6 -16.3 9.7 -0.6 76 76 A W S S- 0 0 189 1,-0.2 3,-0.1 3,-0.0 -1,-0.1 -0.133 83.8-109.1 63.3-167.2 -17.5 6.9 1.8 77 77 A K S S+ 0 0 190 1,-0.1 -1,-0.2 -3,-0.1 2,-0.1 0.044 91.5 67.3-151.9 32.7 -15.9 6.7 5.3 78 78 A T - 0 0 69 -3,-0.3 -1,-0.1 5,-0.0 -2,-0.0 -0.490 64.5-155.0-156.6 80.5 -13.6 3.6 5.3 79 79 A D > - 0 0 83 1,-0.1 3,-4.4 2,-0.1 -38,-0.1 -0.228 38.7-103.0 -55.8 145.5 -10.5 3.6 3.1 80 80 A A G > S+ 0 0 7 1,-0.3 3,-2.9 2,-0.2 -39,-0.3 0.874 122.8 66.8 -37.2 -49.0 -9.4 0.1 2.2 81 81 A S G 3 S+ 0 0 42 -41,-0.4 -1,-0.3 1,-0.3 -2,-0.1 0.749 111.1 36.5 -49.3 -19.7 -6.6 0.4 4.8 82 82 A D G < S+ 0 0 105 -3,-4.4 -1,-0.3 2,-0.1 2,-0.3 0.017 97.6 104.3-123.7 30.3 -9.5 0.4 7.3 83 83 A V S < S- 0 0 44 -3,-2.9 -35,-0.1 -33,-0.1 -42,-0.1 -0.748 73.5-105.7-109.4 159.5 -11.9 -2.1 5.7 84 84 A K - 0 0 176 -2,-0.3 -35,-2.3 1,-0.1 -2,-0.1 -0.652 38.8-109.0 -84.6 138.7 -12.7 -5.7 6.7 85 85 A P B e 49 0B 107 0, 0.0 -35,-0.2 0, 0.0 -1,-0.1 -0.329 360.0 360.0 -63.5 142.0 -11.3 -8.5 4.4 86 86 A c 0 0 126 -37,-1.8 -39,-0.1 -2,-0.0 -38,-0.0 -0.052 360.0 360.0 -54.5 360.0 -14.0 -10.3 2.4