==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-OCT-00 1G4G . COMPND 2 MOLECULE: BETA2-GLYCOPROTEIN I; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.HOSHINO,Y.HAGIHARA,I.NISHII,T.YAMAZAKI,H.KATO,Y.GOTO . 86 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6879.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 52.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 20.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A T 0 0 162 0, 0.0 2,-0.2 0, 0.0 57,-0.1 0.000 360.0 360.0 360.0 169.5 23.0 -5.8 -7.8 2 2 A K - 0 0 163 55,-0.1 31,-0.4 56,-0.0 2,-0.3 -0.572 360.0-173.0-141.3 77.0 19.9 -5.0 -5.6 3 3 A A - 0 0 40 -2,-0.2 56,-2.1 29,-0.1 57,-0.3 -0.527 29.6-117.9 -72.4 130.7 19.2 -1.3 -5.4 4 4 A S - 0 0 59 -2,-0.3 55,-1.9 54,-0.2 28,-0.3 0.112 29.8-116.2 -54.7-178.5 16.4 -0.5 -2.9 5 5 A a - 0 0 11 26,-3.7 2,-0.3 54,-0.2 -1,-0.1 0.057 23.4-107.6-101.8-145.1 13.2 1.1 -4.1 6 6 A K - 0 0 160 24,-0.2 22,-0.1 26,-0.1 23,-0.1 -0.795 29.5-109.5-155.9 108.6 11.7 4.5 -3.3 7 7 A L - 0 0 54 20,-0.4 23,-0.0 -2,-0.3 17,-0.0 -0.106 29.7-162.8 -39.6 100.6 8.6 5.1 -1.2 8 8 A P S S+ 0 0 63 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.784 73.3 27.5 -62.4 -26.6 6.3 6.3 -4.0 9 9 A V S S- 0 0 24 3,-0.0 3,-0.1 1,-0.0 61,-0.0 -0.769 70.2-134.5-128.3 175.6 3.9 7.7 -1.3 10 10 A K S S+ 0 0 154 -2,-0.2 -1,-0.0 59,-0.2 -3,-0.0 0.399 103.0 32.5-111.5 0.8 4.3 9.2 2.2 11 11 A K S S+ 0 0 157 58,-0.1 2,-0.5 13,-0.1 -1,-0.1 -0.103 76.0 143.6-148.2 43.1 1.3 7.3 3.8 12 12 A A - 0 0 2 -3,-0.1 11,-2.5 27,-0.0 2,-0.7 -0.746 32.3-158.5 -90.1 126.2 1.0 4.0 2.0 13 13 A T E +A 22 0A 24 -2,-0.5 27,-0.9 9,-0.2 9,-0.2 -0.872 22.2 163.2-107.0 110.6 -0.0 1.1 4.3 14 14 A V E -AB 21 39A 0 7,-1.8 7,-1.9 -2,-0.7 2,-0.6 -0.578 40.0-113.3-115.3-178.8 0.9 -2.4 3.0 15 15 A V E > -A 20 0A 20 23,-1.3 3,-0.7 5,-0.2 2,-0.6 -0.799 29.7-174.1-120.3 92.6 1.2 -5.9 4.6 16 16 A Y T 3 S- 0 0 57 3,-2.0 21,-0.1 -2,-0.6 19,-0.0 -0.737 78.4 -16.6 -88.1 119.5 4.8 -7.1 4.7 17 17 A Q T 3 S- 0 0 153 -2,-0.6 -1,-0.3 19,-0.3 3,-0.1 0.877 134.5 -47.8 57.9 34.4 5.0 -10.7 5.9 18 18 A G S < S+ 0 0 65 -3,-0.7 2,-0.4 1,-0.2 -1,-0.2 0.905 115.5 120.4 74.6 39.4 1.4 -10.4 7.3 19 19 A E - 0 0 107 2,-0.0 -3,-2.0 0, 0.0 2,-0.6 -0.968 58.6-138.2-140.0 124.4 2.2 -7.0 9.0 20 20 A R E +A 15 0A 187 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.679 40.5 152.1 -82.7 119.0 0.5 -3.6 8.4 21 21 A V E -A 14 0A 32 -7,-1.9 -7,-1.8 -2,-0.6 2,-0.8 -0.967 49.1-106.8-143.3 159.9 3.1 -0.8 8.3 22 22 A K E >>> -A 13 0A 70 -2,-0.3 3,-3.9 -9,-0.2 4,-1.7 -0.762 18.9-151.0 -91.5 109.1 3.5 2.6 6.6 23 23 A I H 3>5S+ 0 0 2 -11,-2.5 4,-0.7 -2,-0.8 -1,-0.2 0.790 97.0 68.8 -48.6 -23.7 6.0 2.4 3.8 24 24 A Q H 345S+ 0 0 58 -12,-0.4 -1,-0.3 2,-0.1 -11,-0.1 0.709 116.9 20.5 -70.6 -15.8 6.7 6.0 4.6 25 25 A E H X45S+ 0 0 115 -3,-3.9 3,-2.0 2,-0.1 4,-0.2 0.730 123.9 48.1-116.2 -59.6 8.2 4.9 8.0 26 26 A K H 3<5S+ 0 0 115 -4,-1.7 -3,-0.2 1,-0.3 3,-0.2 0.839 128.4 31.6 -54.9 -29.4 9.2 1.2 7.8 27 27 A F T >< - 0 0 111 -2,-0.3 3,-0.9 -28,-0.3 2,-0.3 -0.163 52.5 -88.2 -59.6 159.5 14.6 -3.3 -0.1 33 33 A H T 3 S+ 0 0 71 -31,-0.4 24,-0.2 1,-0.2 -1,-0.1 -0.536 113.6 7.5 -72.7 129.8 15.1 -4.9 -3.6 34 34 A G T 3 S+ 0 0 27 -2,-0.3 -1,-0.2 1,-0.3 22,-0.2 0.256 88.5 157.6 85.1 -16.8 12.5 -7.6 -4.3 35 35 A D < - 0 0 8 -3,-0.9 21,-1.2 20,-0.2 2,-0.5 -0.127 34.4-142.6 -42.7 126.2 10.7 -6.7 -1.0 36 36 A K E + C 0 55A 125 19,-0.2 2,-0.4 -3,-0.1 -19,-0.3 -0.828 26.8 169.4 -99.9 130.0 7.1 -7.9 -1.4 37 37 A V E - C 0 54A 0 17,-0.7 17,-0.8 -2,-0.5 2,-0.4 -0.998 24.6-139.4-140.1 140.3 4.3 -5.8 -0.0 38 38 A S E - C 0 53A 11 -23,-0.5 -23,-1.3 -2,-0.4 2,-0.4 -0.789 15.7-140.5 -99.9 140.9 0.5 -6.0 -0.4 39 39 A F E -BC 14 52A 2 13,-1.1 13,-1.8 -2,-0.4 2,-0.4 -0.794 18.9-120.8-100.0 139.5 -1.6 -2.8 -0.8 40 40 A F E + C 0 51A 33 -27,-0.9 41,-0.4 -2,-0.4 2,-0.2 -0.627 43.2 163.2 -79.8 127.7 -5.0 -2.5 0.9 41 41 A b E - C 0 50A 5 9,-2.7 9,-1.8 -2,-0.4 2,-0.3 -0.787 30.9-117.2-133.8 178.5 -7.9 -2.0 -1.6 42 42 A K E - C 0 49A 87 7,-0.3 2,-0.5 -2,-0.2 7,-0.3 -0.895 15.0-141.9-121.5 152.2 -11.7 -2.3 -1.6 43 43 A N E >> - C 0 48A 44 5,-4.5 4,-0.9 -2,-0.3 5,-0.6 -0.932 10.3-172.4-114.8 130.8 -14.1 -4.5 -3.6 44 44 A K T 45S+ 0 0 195 -2,-0.5 -1,-0.1 2,-0.2 5,-0.0 0.861 89.7 49.0 -87.7 -38.1 -17.4 -3.3 -5.0 45 45 A E T 45S+ 0 0 185 1,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.743 125.5 31.4 -73.4 -19.4 -18.7 -6.7 -6.2 46 46 A K T 45S- 0 0 128 2,-0.2 -2,-0.2 40,-0.0 -1,-0.2 0.629 98.2-135.0-109.7 -19.7 -17.8 -8.2 -2.9 47 47 A K T <5S+ 0 0 184 -4,-0.9 2,-0.2 1,-0.3 -3,-0.2 0.839 73.0 87.8 69.8 31.0 -18.4 -5.2 -0.6 48 48 A c E -E 60 0B 58 3,-1.7 3,-1.1 -2,-0.2 2,-0.8 -0.826 47.8 -47.2-140.3 179.9 13.0 -3.9 -7.8 58 58 A D T 3 S- 0 0 60 1,-0.3 -54,-0.2 -2,-0.2 -53,-0.2 -0.286 118.2 -41.2 -53.6 97.3 16.3 -2.1 -8.3 59 59 A G T 3 S+ 0 0 43 -56,-2.1 2,-0.3 -55,-1.9 -1,-0.3 0.749 130.8 95.5 51.8 19.2 15.1 1.5 -7.3 60 60 A T E < +E 57 0B 88 -3,-1.1 -3,-1.7 -57,-0.3 2,-0.3 -0.993 45.6 165.8-139.8 146.8 11.9 0.5 -9.3 61 61 A I E -E 56 0B 35 -2,-0.3 2,-0.8 -5,-0.2 -5,-0.1 -0.983 31.0-137.0-158.8 145.7 8.5 -0.8 -8.4 62 62 A E - 0 0 172 -7,-0.7 -7,-0.2 -2,-0.3 3,-0.1 -0.720 26.7-152.2-107.5 85.6 5.1 -1.2 -10.0 63 63 A V - 0 0 44 -2,-0.8 2,-0.2 1,-0.1 -9,-0.0 -0.224 33.6 -93.5 -54.4 144.5 2.5 -0.2 -7.3 64 64 A P > - 0 0 15 0, 0.0 3,-1.9 0, 0.0 -1,-0.1 -0.396 28.4-136.3 -62.1 126.7 -0.9 -2.0 -7.8 65 65 A K T 3 S+ 0 0 205 1,-0.3 -2,-0.1 -2,-0.2 0, 0.0 0.946 102.9 66.2 -51.0 -50.9 -3.2 0.3 -9.9 66 66 A b T 3 S+ 0 0 53 2,-0.1 -1,-0.3 -27,-0.0 -24,-0.2 0.817 86.7 96.0 -42.6 -29.0 -6.1 -0.4 -7.5 67 67 A F S < S- 0 0 38 -3,-1.9 2,-0.3 -26,-0.1 -26,-0.1 0.015 70.1-144.1 -55.1 172.7 -4.0 1.5 -5.0 68 68 A K - 0 0 110 1,-0.2 -1,-0.1 2,-0.0 -2,-0.1 -0.815 9.7-153.7-147.8 104.2 -4.7 5.2 -4.5 69 69 A E S S- 0 0 124 -2,-0.3 -59,-0.2 1,-0.1 -1,-0.2 0.920 80.3 -54.2 -41.7 -54.4 -1.9 7.8 -3.8 70 70 A H - 0 0 121 -61,-0.0 -1,-0.1 2,-0.0 -2,-0.0 0.355 59.6-154.4-160.1 -35.9 -4.5 10.0 -2.0 71 71 A S - 0 0 59 3,-0.0 -3,-0.0 0, 0.0 0, 0.0 0.899 25.1-128.8 46.4 95.5 -7.5 10.8 -4.3 72 72 A S S S+ 0 0 82 2,-0.1 -2,-0.0 1,-0.1 0, 0.0 0.268 80.6 75.1 -55.3-164.1 -8.8 14.1 -2.9 73 73 A L - 0 0 136 1,-0.2 2,-1.3 0, 0.0 -1,-0.1 0.993 64.6-162.0 57.4 71.1 -12.5 14.5 -2.0 74 74 A A + 0 0 100 2,-0.0 -1,-0.2 4,-0.0 2,-0.1 -0.656 29.6 148.4 -87.5 91.6 -12.5 12.5 1.3 75 75 A F - 0 0 147 -2,-1.3 2,-1.3 1,-0.1 0, 0.0 -0.211 62.4 -33.4-106.3-159.6 -16.2 11.8 1.8 76 76 A W S S+ 0 0 249 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.369 101.1 101.3 -60.2 94.2 -18.0 8.8 3.4 77 77 A K - 0 0 104 -2,-1.3 2,-0.2 -3,-0.1 -2,-0.0 -0.558 61.6-140.0-178.9 108.4 -15.6 6.1 2.5 78 78 A T - 0 0 95 -2,-0.2 2,-0.1 1,-0.1 5,-0.0 -0.514 35.0-106.9 -75.3 140.6 -12.9 4.4 4.6 79 79 A D > - 0 0 102 -2,-0.2 3,-4.6 1,-0.2 -38,-0.1 -0.418 27.7-115.2 -66.8 138.1 -9.6 3.6 2.8 80 80 A A G > S+ 0 0 7 1,-0.3 3,-2.1 -40,-0.2 -39,-0.3 0.844 116.4 70.9 -42.1 -34.4 -9.1 -0.1 2.1 81 81 A S G 3 S+ 0 0 30 -41,-0.4 -1,-0.3 1,-0.3 -2,-0.1 0.696 106.6 37.8 -59.7 -13.3 -6.2 0.1 4.5 82 82 A D G < S+ 0 0 106 -3,-4.6 -1,-0.3 -42,-0.1 2,-0.3 0.012 99.6 98.1-126.5 29.6 -8.8 0.5 7.2 83 83 A V S < S- 0 0 49 -3,-2.1 -35,-0.1 -4,-0.1 -42,-0.0 -0.746 75.5-104.1-114.3 164.7 -11.5 -1.9 5.9 84 84 A K - 0 0 172 -2,-0.3 -35,-1.9 1,-0.1 -2,-0.1 -0.711 39.1-108.1 -89.8 138.4 -12.3 -5.5 6.9 85 85 A P B d 49 0A 93 0, 0.0 -35,-0.2 0, 0.0 -1,-0.1 -0.349 360.0 360.0 -61.9 136.4 -11.3 -8.3 4.5 86 86 A c 0 0 120 -37,-1.6 -39,-0.1 -2,-0.1 -38,-0.1 -0.072 360.0 360.0 -45.1 360.0 -14.3 -9.9 2.7