==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION, CELL CYCLE 06-NOV-00 1G6J . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.R.BABU,P.F.FLYNN,A.J.WAND . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5221.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 64.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 58 0, 0.0 16,-1.7 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0-172.1 -12.5 -4.9 5.4 2 2 A Q E +A 16 0A 71 14,-0.3 62,-1.9 12,-0.0 63,-0.6 -0.601 360.0 176.9 -88.9 149.4 -10.9 -1.8 6.9 3 3 A I E -Ab 15 65A 2 12,-2.2 12,-2.5 61,-0.2 2,-0.6 -0.953 28.4-125.6-147.1 162.8 -7.1 -1.3 7.2 4 4 A F E -Ab 14 66A 66 61,-3.1 63,-2.1 -2,-0.3 2,-0.3 -0.915 26.5-170.9-118.9 104.5 -4.7 1.3 8.4 5 5 A V E -Ab 13 67A 2 8,-2.7 8,-3.2 -2,-0.6 2,-0.3 -0.672 12.9-139.3 -93.7 148.1 -2.1 2.3 5.8 6 6 A K E -Ab 12 68A 87 61,-2.7 63,-2.6 -2,-0.3 6,-0.2 -0.768 11.9-133.1-106.8 152.6 0.9 4.5 6.7 7 7 A T > - 0 0 30 4,-2.0 3,-2.6 -2,-0.3 63,-0.1 -0.556 29.4-105.9-100.1 166.6 2.4 7.4 4.6 8 8 A L T 3 S+ 0 0 131 61,-0.4 62,-0.1 1,-0.3 -1,-0.1 0.636 125.6 56.0 -64.1 -12.9 5.9 8.1 3.7 9 9 A T T 3 S- 0 0 113 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.269 125.3-105.2-100.8 7.8 5.6 10.9 6.3 10 10 A G S < S+ 0 0 48 -3,-2.6 2,-0.2 1,-0.2 -2,-0.2 0.733 70.6 154.5 74.1 23.8 4.5 8.4 8.9 11 11 A K - 0 0 131 1,-0.0 -4,-2.0 2,-0.0 2,-0.6 -0.526 43.9-125.0 -84.1 152.1 1.0 9.6 8.6 12 12 A T E +A 6 0A 89 -6,-0.2 2,-0.5 -2,-0.2 -6,-0.2 -0.887 30.7 175.4-103.4 116.5 -2.0 7.3 9.5 13 13 A I E -A 5 0A 24 -8,-3.2 -8,-2.7 -2,-0.6 2,-0.3 -0.974 11.7-160.3-125.0 117.3 -4.5 6.8 6.8 14 14 A T E -A 4 0A 48 -2,-0.5 2,-0.4 -10,-0.2 -10,-0.2 -0.745 6.5-171.4 -97.9 143.7 -7.4 4.4 7.3 15 15 A L E -A 3 0A 6 -12,-2.5 -12,-2.2 -2,-0.3 2,-0.7 -0.998 14.3-146.2-138.1 130.9 -9.4 3.0 4.4 16 16 A E E +A 2 0A 102 -2,-0.4 -14,-0.3 -14,-0.2 2,-0.2 -0.870 37.2 144.9-100.9 115.0 -12.6 0.9 4.6 17 17 A V - 0 0 9 -16,-1.7 -2,-0.0 -2,-0.7 9,-0.0 -0.748 43.9 -97.6-135.7-178.2 -12.9 -1.7 1.9 18 18 A E - 0 0 106 -2,-0.2 38,-0.3 4,-0.1 3,-0.2 -0.697 21.6-125.3-106.1 159.2 -14.3 -5.2 1.4 19 19 A P S S+ 0 0 43 0, 0.0 38,-1.2 0, 0.0 39,-0.3 0.622 113.9 54.5 -75.0 -13.9 -12.5 -8.6 1.5 20 20 A S S S+ 0 0 90 36,-0.1 2,-0.1 37,-0.1 38,-0.0 0.713 89.0 95.0 -89.1 -25.3 -13.9 -9.2 -2.0 21 21 A D S S- 0 0 34 -3,-0.2 35,-1.1 1,-0.1 36,-0.3 -0.375 76.6-123.2 -67.9 145.5 -12.5 -6.0 -3.4 22 22 A T B > -E 55 0B 30 33,-0.2 4,-2.3 34,-0.1 3,-0.3 -0.346 24.5-103.9 -85.4 169.2 -9.1 -6.3 -5.1 23 23 A I H > S+ 0 0 0 31,-1.7 4,-3.0 29,-0.9 29,-0.2 0.860 124.4 55.7 -59.5 -36.8 -6.0 -4.3 -4.3 24 24 A E H > S+ 0 0 99 28,-0.6 4,-2.7 2,-0.2 -1,-0.3 0.856 106.8 49.8 -63.7 -36.5 -6.6 -2.2 -7.3 25 25 A N H > S+ 0 0 84 -3,-0.3 4,-2.1 27,-0.2 -2,-0.2 0.913 112.5 46.2 -67.9 -44.4 -10.1 -1.4 -5.9 26 26 A V H X S+ 0 0 4 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.905 114.8 47.6 -63.9 -43.0 -8.6 -0.5 -2.5 27 27 A K H X S+ 0 0 22 -4,-3.0 4,-2.2 1,-0.2 -2,-0.2 0.914 110.0 52.2 -63.7 -44.4 -6.0 1.6 -4.2 28 28 A A H X S+ 0 0 40 -4,-2.7 4,-2.6 1,-0.2 5,-0.2 0.868 109.0 51.6 -59.1 -37.9 -8.5 3.2 -6.4 29 29 A K H X S+ 0 0 79 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.919 109.7 47.8 -64.6 -45.5 -10.5 4.1 -3.3 30 30 A I H X>S+ 0 0 4 -4,-2.3 4,-3.3 2,-0.2 5,-0.9 0.816 110.6 55.5 -64.3 -31.1 -7.4 5.6 -1.7 31 31 A Q H <5S+ 0 0 76 -4,-2.2 -2,-0.2 3,-0.2 -1,-0.2 0.975 109.8 41.4 -65.1 -57.9 -6.9 7.5 -5.0 32 32 A D H <5S+ 0 0 148 -4,-2.6 -1,-0.2 2,-0.1 -2,-0.2 0.807 124.3 43.5 -59.5 -30.1 -10.3 9.1 -5.0 33 33 A K H <5S+ 0 0 113 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.2 0.979 132.9 14.9 -77.1 -73.2 -9.9 9.7 -1.3 34 34 A E T <5S- 0 0 110 -4,-3.3 -3,-0.2 2,-0.1 -2,-0.1 0.988 98.6-123.3 -65.9 -62.3 -6.3 10.9 -1.1 35 35 A G < + 0 0 52 -5,-0.9 -4,-0.2 1,-0.4 -3,-0.1 0.230 65.0 130.4 132.7 -7.3 -5.7 11.7 -4.7 36 36 A I - 0 0 40 -6,-0.4 -1,-0.4 1,-0.1 -2,-0.1 -0.580 57.4-119.8 -79.0 137.3 -2.7 9.5 -5.4 37 37 A P - 0 0 33 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.347 10.2-127.8 -75.0 157.3 -2.9 7.3 -8.5 38 38 A P S S+ 0 0 43 0, 0.0 3,-0.5 0, 0.0 -10,-0.1 0.737 108.8 62.6 -75.0 -24.3 -2.7 3.5 -8.3 39 39 A D S S+ 0 0 140 1,-0.2 -3,-0.0 3,-0.1 0, 0.0 0.831 112.4 35.9 -68.3 -33.1 0.1 3.5 -10.9 40 40 A Q S S+ 0 0 77 -3,-0.2 32,-0.4 31,-0.0 2,-0.4 0.273 99.9 106.1-101.2 7.4 2.2 5.6 -8.5 41 41 A Q - 0 0 13 -3,-0.5 2,-0.4 30,-0.1 30,-0.2 -0.757 45.6-176.8 -92.8 133.2 0.9 3.7 -5.5 42 42 A R E -C 70 0A 108 28,-2.1 28,-3.2 -2,-0.4 2,-0.6 -0.854 1.0-176.2-134.0 97.4 3.1 1.1 -3.9 43 43 A L E -C 69 0A 4 -2,-0.4 7,-2.5 7,-0.2 2,-0.4 -0.840 9.5-159.4 -97.5 124.3 1.6 -0.8 -1.0 44 44 A I E +CD 68 49A 58 24,-2.2 24,-1.6 -2,-0.6 2,-0.3 -0.830 14.9 170.2-105.0 141.4 3.9 -3.2 0.8 45 45 A F E > - D 0 48A 40 3,-2.9 3,-2.7 -2,-0.4 22,-0.1 -0.934 68.9 -8.9-154.4 126.6 2.7 -6.1 2.9 46 46 A A T 3 S- 0 0 102 -2,-0.3 3,-0.1 1,-0.3 21,-0.0 0.670 126.3 -63.1 61.3 15.8 4.5 -9.0 4.5 47 47 A G T 3 S+ 0 0 66 1,-0.4 2,-0.3 0, 0.0 -1,-0.3 0.300 121.0 105.3 90.8 -7.4 7.4 -7.7 2.5 48 48 A K E < S-D 45 0A 149 -3,-2.7 -3,-2.9 3,-0.0 -1,-0.4 -0.797 76.3-110.4-106.9 149.2 5.5 -8.4 -0.7 49 49 A Q E -D 44 0A 95 -2,-0.3 2,-0.5 -5,-0.2 -5,-0.2 -0.558 36.0-106.9 -79.0 139.7 3.9 -5.9 -3.0 50 50 A L - 0 0 6 -7,-2.5 2,-0.5 -2,-0.2 -7,-0.2 -0.542 34.5-145.4 -69.4 116.9 0.1 -5.8 -3.0 51 51 A E > - 0 0 104 -2,-0.5 3,-2.3 1,-0.2 -28,-0.6 -0.750 8.6-140.9 -89.3 126.7 -1.0 -7.3 -6.4 52 52 A D T 3 S+ 0 0 86 -2,-0.5 -29,-0.9 1,-0.3 -28,-0.6 0.913 107.6 54.7 -47.9 -50.3 -4.1 -5.8 -7.9 53 53 A G T 3 S+ 0 0 61 -31,-0.1 2,-0.4 -30,-0.1 -1,-0.3 0.682 100.6 79.7 -58.3 -17.8 -5.1 -9.3 -9.0 54 54 A R S < S- 0 0 120 -3,-2.3 -31,-1.7 3,-0.0 2,-0.2 -0.796 74.0-148.6 -97.2 134.2 -4.7 -10.2 -5.4 55 55 A T B > -E 22 0B 20 -2,-0.4 4,-0.7 -33,-0.2 -33,-0.2 -0.535 26.2-112.7 -96.9 165.2 -7.5 -9.3 -2.9 56 56 A L T >4>S+ 0 0 0 -35,-1.1 5,-1.5 -38,-0.3 3,-0.6 0.886 120.4 51.2 -61.9 -40.2 -7.2 -8.5 0.7 57 57 A S G >45S+ 0 0 67 -38,-1.2 3,-1.8 -36,-0.3 -1,-0.2 0.908 105.1 54.4 -63.1 -44.0 -8.9 -11.7 1.6 58 58 A D G 345S+ 0 0 111 -39,-0.3 -1,-0.3 1,-0.3 -2,-0.2 0.670 109.4 51.0 -63.6 -15.9 -6.5 -13.7 -0.6 59 59 A Y G <<5S- 0 0 47 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.2 0.477 107.9-130.2 -97.9 -6.9 -3.9 -12.0 1.5 60 60 A N T < 5 - 0 0 120 -3,-1.8 -3,-0.2 -4,-0.3 2,-0.2 0.944 38.2-173.7 55.2 52.4 -5.6 -13.0 4.8 61 61 A I < - 0 0 8 -5,-1.5 2,-0.3 -42,-0.1 -1,-0.2 -0.510 16.6-128.9 -79.0 146.9 -5.4 -9.5 6.1 62 62 A Q > - 0 0 105 -2,-0.2 3,-0.8 1,-0.1 -1,-0.1 -0.682 36.7 -81.7 -97.3 151.1 -6.4 -8.8 9.7 63 63 A K T 3 S+ 0 0 146 -2,-0.3 -60,-0.2 1,-0.3 -1,-0.1 -0.200 117.7 7.7 -49.8 133.5 -8.9 -6.1 10.8 64 64 A E T 3 S- 0 0 111 -62,-1.9 -1,-0.3 1,-0.1 -61,-0.2 0.933 94.5-174.5 55.4 50.9 -7.1 -2.8 11.0 65 65 A S E < -b 3 0A 11 -3,-0.8 -61,-3.1 -63,-0.6 2,-0.8 -0.340 28.3-111.2 -74.8 158.3 -4.0 -4.2 9.4 66 66 A T E +b 4 0A 103 -63,-0.2 2,-0.3 -2,-0.1 -61,-0.2 -0.831 41.1 178.5 -96.8 107.3 -0.8 -2.1 9.1 67 67 A L E -b 5 0A 4 -63,-2.1 -61,-2.7 -2,-0.8 2,-0.7 -0.813 24.8-134.1-109.2 149.5 -0.1 -1.4 5.4 68 68 A H E -bC 6 44A 92 -24,-1.6 -24,-2.2 -2,-0.3 2,-1.0 -0.906 13.5-162.2-107.2 110.7 2.8 0.7 4.1 69 69 A L E + C 0 43A 4 -63,-2.6 -61,-0.4 -2,-0.7 2,-0.3 -0.786 25.5 162.1 -95.0 96.6 1.7 3.2 1.4 70 70 A V E - C 0 42A 30 -28,-3.2 -28,-2.1 -2,-1.0 2,-0.0 -0.783 32.4-122.3-114.1 158.4 4.9 4.1 -0.4 71 71 A L - 0 0 78 -2,-0.3 2,-0.3 -30,-0.2 -30,-0.1 -0.156 39.6 -80.8 -86.5-174.9 5.4 5.8 -3.7 72 72 A R - 0 0 123 -32,-0.4 -1,-0.1 1,-0.2 -30,-0.1 -0.659 26.9-154.3 -92.1 147.1 7.4 4.5 -6.7 73 73 A L S S+ 0 0 148 -2,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.969 76.0 9.9 -80.1 -72.9 11.1 4.7 -7.0 74 74 A R - 0 0 203 1,-0.2 -2,-0.1 0, 0.0 0, 0.0 0.226 70.0-140.5 -86.2-149.6 11.8 4.7 -10.7 75 75 A G 0 0 63 1,-0.4 -1,-0.2 -3,-0.0 -2,-0.1 0.221 360.0 360.0-138.7 -94.8 9.3 5.0 -13.6 76 76 A G 0 0 131 0, 0.0 -1,-0.4 0, 0.0 0, 0.0 -0.721 360.0 360.0-115.0 360.0 9.5 3.0 -16.8