==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 08-NOV-00 1G70 . COMPND 2 MOLECULE: RSG-1.2 PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR Y.GOSSER,T.HERMANN,A.MAJUMDAR,W.HU,R.FREDERICK,F.JIANG,W.XU, . 16 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1731.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 B S 0 0 149 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -34.0 5.8 6.7 -1.2 2 8 B R - 0 0 206 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.423 360.0 -81.0 -62.3 164.8 3.5 5.3 -3.1 3 9 B P - 0 0 48 0, 0.0 2,-1.4 0, 0.0 5,-0.1 -0.234 48.0-111.5 -53.7 132.3 1.8 3.0 -0.5 4 10 B S - 0 0 79 1,-0.2 2,-2.5 3,-0.1 0, 0.0 -0.043 32.3-116.6 -67.6 21.1 3.8 -0.1 -0.1 5 11 B G S > S+ 0 0 22 -2,-1.4 4,-1.7 1,-0.2 -1,-0.2 -0.304 119.6 62.1 67.4 -52.8 1.4 -2.7 -1.7 6 12 B A H > S+ 0 0 65 -2,-2.5 4,-1.4 1,-0.2 -1,-0.2 0.864 99.5 58.0 -53.7 -38.3 1.2 -4.4 1.7 7 13 B E H > S+ 0 0 58 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.778 99.7 54.5 -69.6 -32.5 -0.3 -1.0 2.6 8 14 B R H >> S+ 0 0 159 2,-0.2 4,-1.0 1,-0.2 3,-1.0 0.928 107.4 50.4 -60.8 -48.0 -3.0 -1.5 -0.0 9 15 B R H 3X S+ 0 0 146 -4,-1.7 4,-0.8 1,-0.2 -2,-0.2 0.804 108.7 54.2 -57.8 -30.4 -3.9 -4.8 1.7 10 16 B R H 3X S+ 0 0 145 -4,-1.4 4,-0.5 2,-0.2 -1,-0.2 0.707 96.9 66.9 -72.8 -21.0 -4.0 -2.8 5.0 11 17 B R H XX S+ 0 0 147 -3,-1.0 3,-0.8 -4,-0.8 4,-0.6 0.963 109.3 33.7 -63.0 -55.9 -6.6 -0.3 3.5 12 18 B R H 3X S+ 0 0 152 -4,-1.0 4,-2.5 1,-0.2 -1,-0.2 0.719 116.2 59.6 -68.4 -27.3 -9.4 -2.8 3.2 13 19 B A H 3< S+ 0 0 53 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.463 96.2 60.0 -85.5 -5.4 -8.1 -4.5 6.4 14 20 B A H << S+ 0 0 94 -3,-0.8 -1,-0.2 -4,-0.5 -2,-0.2 0.759 120.0 29.9 -76.0 -30.5 -8.6 -1.3 8.4 15 21 B A H < 0 0 93 -4,-0.6 -2,-0.2 -3,-0.2 -3,-0.1 0.773 360.0 360.0-100.1 -38.1 -12.3 -1.6 7.4 16 22 B A < 0 0 115 -4,-2.5 -3,-0.2 0, 0.0 -2,-0.1 0.782 360.0 360.0-111.5 360.0 -13.1 -5.4 7.0