==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-FEB-06 2G7O . COMPND 2 MOLECULE: PROTEIN TRAM; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.LU,R.A.EDWARDS,J.J.WONG,J.MANCHAK,P.G.SCOTT,L.S.FROST,J.N. . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6486.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 77.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 60 A A 0 0 156 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 88.7 -11.8 -8.7 25.2 2 61 A F - 0 0 152 1,-0.1 2,-1.5 2,-0.0 3,-0.2 -0.546 360.0-141.9 -74.4 119.4 -9.6 -7.1 22.5 3 62 A N > + 0 0 90 -2,-0.5 4,-2.3 1,-0.2 5,-0.2 -0.625 23.7 176.3 -85.2 87.6 -7.0 -9.6 21.1 4 63 A Q H > S+ 0 0 95 -2,-1.5 4,-2.9 1,-0.2 -1,-0.2 0.862 77.8 55.5 -60.0 -37.8 -4.0 -7.3 20.6 5 64 A T H > S+ 0 0 93 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.947 110.2 43.6 -63.5 -48.3 -1.8 -10.2 19.6 6 65 A E H > S+ 0 0 93 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.875 113.4 52.6 -65.3 -35.4 -4.2 -11.3 16.8 7 66 A F H X S+ 0 0 99 -4,-2.3 4,-2.8 1,-0.2 -2,-0.2 0.953 109.6 49.1 -62.7 -48.1 -4.6 -7.7 15.7 8 67 A N H X S+ 0 0 76 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.863 109.1 53.3 -57.5 -40.1 -0.8 -7.3 15.5 9 68 A K H X S+ 0 0 120 -4,-2.2 4,-2.4 2,-0.2 -1,-0.2 0.917 111.6 44.2 -63.0 -45.8 -0.6 -10.5 13.4 10 69 A L H X S+ 0 0 103 -4,-2.2 4,-2.7 2,-0.2 5,-0.2 0.926 113.6 51.2 -64.4 -44.9 -3.1 -9.2 10.9 11 70 A L H X S+ 0 0 90 -4,-2.8 4,-2.7 1,-0.2 5,-0.2 0.938 113.1 45.0 -57.0 -48.2 -1.5 -5.8 10.8 12 71 A L H X S+ 0 0 109 -4,-2.6 4,-2.7 2,-0.2 5,-0.4 0.932 111.9 50.8 -66.2 -45.3 1.9 -7.2 10.2 13 72 A E H X S+ 0 0 123 -4,-2.4 4,-2.4 1,-0.2 5,-0.3 0.940 113.7 46.6 -57.5 -46.1 0.8 -9.7 7.5 14 73 A C H X S+ 0 0 63 -4,-2.7 4,-2.8 -5,-0.2 5,-0.2 0.951 115.3 42.7 -62.6 -51.2 -1.0 -6.9 5.7 15 74 A V H X S+ 0 0 79 -4,-2.7 4,-2.4 -5,-0.2 -1,-0.2 0.893 117.3 46.0 -69.9 -36.7 1.8 -4.3 5.8 16 75 A V H X S+ 0 0 86 -4,-2.7 4,-2.4 -5,-0.2 5,-0.2 0.931 115.5 46.6 -68.5 -44.0 4.6 -6.8 4.9 17 76 A K H X S+ 0 0 134 -4,-2.4 4,-2.1 -5,-0.4 -2,-0.2 0.917 113.9 49.0 -63.6 -43.7 2.5 -8.4 2.1 18 77 A T H X S+ 0 0 86 -4,-2.8 4,-3.1 -5,-0.3 5,-0.2 0.938 111.6 47.8 -61.8 -46.5 1.6 -5.0 0.8 19 78 A Q H X S+ 0 0 119 -4,-2.4 4,-2.4 1,-0.2 -2,-0.2 0.922 112.2 49.0 -63.7 -42.9 5.2 -3.7 0.8 20 79 A S H X S+ 0 0 57 -4,-2.4 4,-1.0 1,-0.2 -1,-0.2 0.886 115.8 44.8 -62.5 -36.8 6.5 -6.9 -0.9 21 80 A S H X S+ 0 0 55 -4,-2.1 4,-2.4 -5,-0.2 3,-0.3 0.909 111.8 51.0 -73.3 -45.3 3.8 -6.5 -3.6 22 81 A V H X S+ 0 0 70 -4,-3.1 4,-2.7 1,-0.2 5,-0.2 0.853 103.4 59.7 -62.5 -37.0 4.3 -2.8 -4.1 23 82 A A H X S+ 0 0 39 -4,-2.4 4,-1.5 -5,-0.2 -1,-0.2 0.891 109.9 43.4 -58.6 -37.3 8.0 -3.3 -4.6 24 83 A K H X S+ 0 0 125 -4,-1.0 4,-2.6 -3,-0.3 -2,-0.2 0.910 111.4 52.2 -74.2 -43.6 7.2 -5.5 -7.5 25 84 A I H X S+ 0 0 92 -4,-2.4 4,-2.9 1,-0.2 5,-0.2 0.904 107.9 54.0 -57.4 -39.9 4.5 -3.2 -8.9 26 85 A L H X S+ 0 0 45 -4,-2.7 4,-2.0 1,-0.2 -1,-0.2 0.919 109.1 48.0 -61.3 -44.3 7.1 -0.4 -8.8 27 86 A G H X S+ 0 0 19 -4,-1.5 4,-0.8 -5,-0.2 -1,-0.2 0.925 112.8 47.5 -63.4 -45.0 9.5 -2.4 -10.8 28 87 A I H >< S+ 0 0 123 -4,-2.6 3,-1.1 1,-0.2 4,-0.2 0.933 112.1 50.1 -61.7 -43.8 6.9 -3.3 -13.4 29 88 A E H >< S+ 0 0 105 -4,-2.9 3,-1.6 1,-0.3 -1,-0.2 0.843 102.1 61.3 -64.6 -34.0 5.7 0.3 -13.7 30 89 A S H 3< S+ 0 0 28 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.774 102.5 53.5 -61.3 -24.2 9.3 1.5 -14.1 31 90 A L T << S+ 0 0 148 -3,-1.1 -1,-0.3 -4,-0.8 -2,-0.2 0.438 80.7 123.0 -90.4 -2.0 9.4 -0.6 -17.3 32 91 A S X - 0 0 24 -3,-1.6 3,-1.6 -4,-0.2 4,-0.4 -0.377 66.3-132.0 -64.6 135.9 6.2 1.0 -18.7 33 92 A P G > S+ 0 0 107 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 0.812 100.6 64.9 -61.5 -28.0 6.8 2.6 -22.2 34 93 A H G 3 S+ 0 0 148 1,-0.2 -2,-0.1 3,-0.0 -3,-0.0 0.672 105.7 44.0 -74.0 -11.1 5.1 5.9 -21.3 35 94 A V G X S+ 0 0 23 -3,-1.6 3,-2.1 -6,-0.2 -1,-0.2 0.379 79.9 127.5-110.3 7.0 7.8 6.7 -18.7 36 95 A S T < S+ 0 0 95 -3,-1.1 3,-0.1 -4,-0.4 -5,-0.1 -0.370 81.4 15.7 -56.8 134.8 10.9 5.6 -20.8 37 96 A G T 3 S+ 0 0 92 1,-0.2 2,-0.8 2,-0.1 -1,-0.3 0.485 92.9 123.2 75.2 3.4 13.4 8.5 -20.8 38 97 A N X - 0 0 68 -3,-2.1 3,-1.6 1,-0.2 4,-0.4 -0.857 49.3-160.5 -96.2 105.5 11.6 10.2 -17.8 39 98 A S G > S+ 0 0 80 -2,-0.8 3,-1.0 1,-0.3 -1,-0.2 0.781 85.2 66.1 -58.7 -29.2 14.4 10.6 -15.2 40 99 A K G 3 S+ 0 0 149 1,-0.2 -1,-0.3 -3,-0.1 -5,-0.0 0.819 109.6 37.5 -63.2 -29.8 11.9 11.0 -12.4 41 100 A F G < S+ 0 0 74 -3,-1.6 -1,-0.2 -6,-0.2 -2,-0.2 0.261 80.1 128.7-112.3 11.6 10.7 7.4 -12.9 42 101 A E <> - 0 0 108 -3,-1.0 4,-2.7 -4,-0.4 5,-0.2 -0.482 66.1-124.2 -62.1 136.1 14.0 5.7 -13.7 43 102 A Y H > S+ 0 0 111 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.909 106.5 47.4 -61.6 -47.0 14.1 2.7 -11.4 44 103 A A H > S+ 0 0 62 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.884 113.0 51.1 -61.1 -38.2 17.5 3.5 -9.7 45 104 A N H > S+ 0 0 75 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.928 111.3 47.5 -64.4 -44.9 16.4 7.1 -9.2 46 105 A M H X S+ 0 0 23 -4,-2.7 4,-2.7 1,-0.2 -2,-0.2 0.923 110.8 51.1 -60.4 -47.1 13.1 6.0 -7.6 47 106 A V H X S+ 0 0 63 -4,-2.7 4,-2.8 1,-0.2 -1,-0.2 0.895 110.4 49.3 -58.9 -41.7 14.9 3.5 -5.3 48 107 A E H X S+ 0 0 83 -4,-2.1 4,-2.2 -5,-0.2 -1,-0.2 0.913 111.3 48.8 -64.9 -42.5 17.3 6.1 -4.1 49 108 A D H X S+ 0 0 110 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.933 113.9 46.3 -63.5 -44.8 14.6 8.6 -3.3 50 109 A I H X S+ 0 0 82 -4,-2.7 4,-2.7 1,-0.2 5,-0.3 0.925 110.6 53.2 -62.3 -44.8 12.6 5.9 -1.5 51 110 A R H X S+ 0 0 119 -4,-2.8 4,-2.6 1,-0.2 -1,-0.2 0.903 108.8 49.3 -57.8 -43.9 15.7 4.8 0.5 52 111 A E H X S+ 0 0 96 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.910 112.1 48.7 -63.7 -42.6 16.4 8.4 1.6 53 112 A K H X S+ 0 0 134 -4,-2.1 4,-2.1 2,-0.2 5,-0.2 0.937 113.8 44.6 -62.7 -49.5 12.8 8.9 2.8 54 113 A V H X S+ 0 0 80 -4,-2.7 4,-2.6 1,-0.2 5,-0.2 0.940 113.6 51.1 -62.3 -46.5 12.7 5.6 4.7 55 114 A S H X S+ 0 0 54 -4,-2.6 4,-2.1 -5,-0.3 -1,-0.2 0.898 109.7 49.9 -60.0 -39.4 16.1 6.2 6.3 56 115 A S H X S+ 0 0 63 -4,-2.2 4,-1.4 2,-0.2 -1,-0.2 0.933 112.7 45.3 -71.7 -39.7 15.1 9.7 7.4 57 116 A E H X S+ 0 0 80 -4,-2.1 4,-1.8 1,-0.2 5,-0.2 0.917 112.9 51.3 -67.3 -39.6 11.9 8.6 9.1 58 117 A M H X S+ 0 0 91 -4,-2.6 4,-3.3 1,-0.2 -1,-0.2 0.885 108.5 51.8 -63.1 -36.2 13.6 5.7 10.7 59 118 A E H < S+ 0 0 73 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.790 106.2 55.6 -71.8 -27.6 16.3 8.0 12.1 60 119 A R H < S+ 0 0 186 -4,-1.4 -1,-0.2 -3,-0.2 -2,-0.2 0.934 123.0 23.9 -67.7 -44.6 13.7 10.2 13.6 61 120 A F H < S+ 0 0 128 -4,-1.8 -2,-0.2 1,-0.2 -3,-0.2 0.769 136.3 28.4 -95.1 -29.5 12.0 7.4 15.6 62 121 A F S < S- 0 0 142 -4,-3.3 -1,-0.2 -5,-0.2 -2,-0.2 -0.573 80.9-169.0-132.7 65.2 14.8 4.9 16.0 63 122 A P - 0 0 43 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.270 29.1-130.8 -64.1 142.4 18.1 6.9 16.0 64 123 A K S S+ 0 0 187 1,-0.1 2,-0.7 2,-0.1 -5,-0.0 0.837 100.6 66.7 -54.9 -35.9 21.4 5.0 15.7 65 124 A N > - 0 0 78 1,-0.1 3,-0.5 2,-0.0 -1,-0.1 -0.823 65.6-172.0 -92.9 110.2 22.5 7.2 18.7 66 125 A D T 3 S+ 0 0 155 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.1 0.225 80.2 49.8 -85.8 12.7 20.5 6.2 21.8 67 126 A D T 3 0 0 140 1,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.248 360.0 360.0-147.1 54.4 21.9 9.2 23.8 68 127 A E < 0 0 188 -3,-0.5 -2,-0.1 -5,-0.0 -1,-0.0 0.959 360.0 360.0 -73.6 360.0 21.6 12.4 21.8