==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 06-MAR-06 2G9E . COMPND 2 MOLECULE: PROTEIN TRAM; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.LU,R.A.EDWARDS,J.J.WONG,J.MANCHAK,P.G.SCOTT,L.S.FROST,J.N. . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6408.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 77.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 60 A A 0 0 162 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 122.9 13.3 9.2 -0.8 2 61 A F - 0 0 139 4,-0.0 2,-0.9 3,-0.0 3,-0.1 -0.925 360.0-154.4-110.9 124.3 10.4 7.5 -2.6 3 62 A N > - 0 0 88 -2,-0.5 4,-2.5 1,-0.2 5,-0.2 -0.849 8.5-173.2-103.1 99.2 7.3 9.6 -3.1 4 63 A Q H > S+ 0 0 102 -2,-0.9 4,-3.0 2,-0.2 -1,-0.2 0.843 85.7 53.3 -59.0 -39.0 4.3 7.3 -3.3 5 64 A T H > S+ 0 0 94 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.937 112.0 43.9 -65.1 -45.7 1.9 10.1 -4.3 6 65 A E H > S+ 0 0 93 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.867 113.7 52.1 -65.3 -38.4 4.2 11.3 -7.1 7 66 A F H X S+ 0 0 100 -4,-2.5 4,-2.9 2,-0.2 -2,-0.2 0.940 109.6 49.1 -57.1 -52.0 4.6 7.6 -8.2 8 67 A N H X S+ 0 0 79 -4,-3.0 4,-2.5 2,-0.2 -2,-0.2 0.877 111.0 50.5 -54.2 -42.4 0.8 7.2 -8.2 9 68 A K H X S+ 0 0 123 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.919 113.4 44.2 -65.4 -47.1 0.4 10.4 -10.3 10 69 A L H X S+ 0 0 98 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.906 113.2 51.6 -63.1 -44.9 3.0 9.2 -12.9 11 70 A L H X S+ 0 0 89 -4,-2.9 4,-2.4 1,-0.2 5,-0.2 0.933 113.3 45.3 -55.1 -49.0 1.5 5.7 -12.9 12 71 A L H X S+ 0 0 114 -4,-2.5 4,-2.5 -5,-0.2 5,-0.3 0.914 111.8 50.3 -65.4 -46.2 -1.9 7.1 -13.5 13 72 A E H X S+ 0 0 119 -4,-2.5 4,-2.6 1,-0.2 5,-0.3 0.934 112.6 47.6 -57.1 -47.8 -0.9 9.5 -16.2 14 73 A C H X S+ 0 0 61 -4,-2.4 4,-2.7 1,-0.2 -2,-0.2 0.941 115.5 42.9 -60.3 -51.6 1.0 6.8 -18.2 15 74 A V H X S+ 0 0 78 -4,-2.4 4,-2.0 -5,-0.2 -1,-0.2 0.871 117.2 46.0 -68.9 -34.9 -1.8 4.3 -18.1 16 75 A V H X S+ 0 0 90 -4,-2.5 4,-2.2 -5,-0.2 -2,-0.2 0.924 116.0 45.4 -71.8 -43.9 -4.6 6.8 -18.9 17 76 A K H X S+ 0 0 142 -4,-2.6 4,-2.0 -5,-0.3 -2,-0.2 0.897 113.3 51.1 -63.4 -43.3 -2.6 8.4 -21.7 18 77 A T H X S+ 0 0 84 -4,-2.7 4,-3.0 -5,-0.3 5,-0.2 0.931 110.8 47.8 -60.6 -46.3 -1.6 5.0 -23.0 19 78 A Q H X S+ 0 0 119 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.915 111.6 49.5 -63.9 -44.9 -5.2 3.7 -23.0 20 79 A S H X S+ 0 0 62 -4,-2.2 4,-1.0 1,-0.2 -1,-0.2 0.889 115.7 44.7 -59.6 -40.3 -6.5 6.8 -24.8 21 80 A S H X S+ 0 0 54 -4,-2.0 4,-2.5 2,-0.2 3,-0.3 0.908 111.4 51.7 -71.0 -44.2 -3.8 6.5 -27.4 22 81 A V H X S+ 0 0 68 -4,-3.0 4,-2.8 1,-0.2 5,-0.2 0.842 103.9 58.2 -63.7 -35.8 -4.3 2.7 -27.9 23 82 A A H X S+ 0 0 39 -4,-2.3 4,-1.6 -5,-0.2 -1,-0.2 0.880 110.7 43.5 -59.7 -38.6 -8.0 3.3 -28.4 24 83 A K H X S+ 0 0 132 -4,-1.0 4,-2.6 -3,-0.3 -2,-0.2 0.906 112.0 52.5 -73.1 -43.1 -7.1 5.6 -31.4 25 84 A I H X S+ 0 0 89 -4,-2.5 4,-2.4 2,-0.2 5,-0.2 0.912 109.5 49.8 -57.6 -47.7 -4.4 3.2 -32.7 26 85 A L H X S+ 0 0 48 -4,-2.8 4,-2.0 2,-0.2 -1,-0.2 0.915 110.6 50.3 -55.7 -48.2 -7.0 0.3 -32.7 27 86 A G H X S+ 0 0 18 -4,-1.6 4,-0.7 -5,-0.2 -2,-0.2 0.910 111.2 48.3 -55.5 -47.7 -9.5 2.5 -34.6 28 87 A I H >< S+ 0 0 121 -4,-2.6 3,-1.1 1,-0.2 -2,-0.2 0.937 114.1 45.3 -59.2 -50.5 -6.9 3.5 -37.2 29 88 A L H >< S+ 0 0 101 -4,-2.4 3,-1.4 1,-0.3 -1,-0.2 0.782 102.2 64.8 -68.4 -28.6 -5.7 -0.1 -37.8 30 89 A S H 3< S+ 0 0 23 -4,-2.0 -1,-0.3 1,-0.3 13,-0.2 0.743 103.0 52.0 -62.7 -24.1 -9.3 -1.4 -37.9 31 90 A L T << S+ 0 0 141 -3,-1.1 -1,-0.3 -4,-0.7 -2,-0.2 0.382 79.1 117.9 -93.9 -2.3 -9.6 0.7 -41.1 32 91 A S X - 0 0 34 -3,-1.4 3,-2.2 1,-0.1 4,-0.2 -0.539 68.3-132.4 -68.6 128.3 -6.5 -0.7 -42.8 33 92 A P G > S+ 0 0 103 0, 0.0 3,-1.9 0, 0.0 -1,-0.1 0.814 100.0 72.1 -50.0 -34.7 -7.5 -2.4 -46.1 34 93 A H G 3 S+ 0 0 153 1,-0.3 -2,-0.1 3,-0.0 -3,-0.0 0.635 107.7 34.4 -64.1 -11.1 -5.4 -5.5 -45.3 35 94 A V G X S+ 0 0 19 -3,-2.2 3,-1.9 -6,-0.2 -1,-0.3 0.214 82.8 134.8-122.3 16.0 -7.9 -6.5 -42.6 36 95 A S T < S+ 0 0 93 -3,-1.9 3,-0.1 1,-0.3 -5,-0.1 -0.469 81.8 8.5 -69.0 132.5 -11.2 -5.3 -44.2 37 96 A G T 3 S+ 0 0 63 1,-0.2 2,-0.8 -2,-0.2 -1,-0.3 0.628 91.2 131.7 68.3 13.6 -13.9 -7.9 -43.8 38 97 A N X - 0 0 68 -3,-1.9 3,-1.6 1,-0.1 -1,-0.2 -0.903 51.6-150.8 -92.6 108.3 -11.6 -10.0 -41.5 39 98 A S G > S+ 0 0 76 -2,-0.8 3,-1.1 1,-0.3 6,-0.1 0.775 87.8 59.6 -59.0 -37.1 -14.1 -10.7 -38.8 40 99 A K G 3 S+ 0 0 157 1,-0.2 -1,-0.3 -3,-0.1 -5,-0.0 0.818 113.9 39.5 -59.0 -31.1 -11.7 -10.9 -35.8 41 100 A F G < S+ 0 0 84 -3,-1.6 2,-0.4 -6,-0.2 -1,-0.2 0.209 79.4 125.1-111.9 14.5 -10.5 -7.3 -36.6 42 101 A E <> - 0 0 90 -3,-1.1 4,-2.4 -4,-0.2 3,-0.4 -0.618 67.5-125.8 -68.6 128.3 -13.9 -5.7 -37.4 43 102 A Y H > S+ 0 0 113 -2,-0.4 4,-3.1 1,-0.2 5,-0.2 0.868 105.8 48.8 -48.6 -51.0 -14.0 -2.7 -35.1 44 103 A A H > S+ 0 0 76 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.897 113.3 48.8 -60.2 -40.8 -17.5 -3.5 -33.5 45 104 A N H > S+ 0 0 83 -3,-0.4 4,-2.0 2,-0.2 -1,-0.2 0.888 113.1 47.4 -62.5 -42.4 -16.4 -7.1 -32.9 46 105 A M H X S+ 0 0 23 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.919 110.3 51.5 -66.9 -45.0 -13.1 -6.0 -31.3 47 106 A V H X S+ 0 0 63 -4,-3.1 4,-2.3 -5,-0.2 -2,-0.2 0.888 111.0 48.7 -59.5 -40.4 -14.8 -3.4 -29.1 48 107 A E H X S+ 0 0 83 -4,-2.0 4,-2.3 -5,-0.2 -1,-0.2 0.907 111.7 48.5 -63.9 -46.3 -17.3 -6.1 -27.8 49 108 A D H X S+ 0 0 97 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.878 112.1 49.0 -63.8 -39.5 -14.5 -8.5 -27.1 50 109 A I H X S+ 0 0 80 -4,-2.4 4,-2.8 2,-0.2 5,-0.2 0.921 109.2 53.6 -66.4 -43.8 -12.5 -5.9 -25.3 51 110 A R H X S+ 0 0 130 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.902 108.8 48.5 -55.5 -47.0 -15.6 -4.9 -23.3 52 111 A E H X S+ 0 0 92 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.907 111.8 49.8 -60.5 -46.8 -16.1 -8.6 -22.2 53 112 A K H X S+ 0 0 124 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.932 112.6 45.5 -60.1 -49.3 -12.5 -8.8 -21.1 54 113 A V H X S+ 0 0 80 -4,-2.8 4,-2.9 1,-0.2 5,-0.2 0.941 114.5 49.4 -59.3 -48.0 -12.5 -5.6 -19.1 55 114 A S H X S+ 0 0 52 -4,-2.7 4,-2.7 -5,-0.2 -2,-0.2 0.915 108.3 53.3 -56.1 -45.4 -15.9 -6.6 -17.5 56 115 A S H X S+ 0 0 59 -4,-2.7 4,-0.7 1,-0.2 -1,-0.2 0.886 115.3 39.2 -63.6 -39.5 -14.6 -10.1 -16.6 57 116 A E H X S+ 0 0 75 -4,-1.9 4,-1.1 2,-0.2 3,-0.4 0.870 114.0 52.9 -77.2 -39.7 -11.5 -8.7 -14.8 58 117 A M H X S+ 0 0 94 -4,-2.9 4,-3.5 1,-0.2 3,-0.4 0.884 105.7 56.6 -62.0 -37.5 -13.3 -5.8 -13.2 59 118 A E H < S+ 0 0 63 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.758 102.1 56.0 -65.0 -30.1 -15.9 -8.2 -11.8 60 119 A R H < S+ 0 0 166 -4,-0.7 -1,-0.2 -3,-0.4 -2,-0.2 0.852 124.2 21.2 -64.6 -37.9 -13.2 -10.3 -10.0 61 120 A F H < S+ 0 0 127 -4,-1.1 -2,-0.2 -3,-0.4 -3,-0.1 0.778 138.5 22.0-107.0 -35.0 -11.9 -7.3 -8.1 62 121 A F S < S- 0 0 145 -4,-3.5 -2,-0.1 -5,-0.2 -1,-0.1 -0.505 78.2-168.8-135.4 64.9 -14.7 -4.7 -8.0 63 122 A P - 0 0 34 0, 0.0 -4,-0.1 0, 0.0 -3,-0.0 -0.176 30.2-129.7 -58.9 145.5 -18.0 -6.5 -8.6 64 123 A K S S+ 0 0 191 1,-0.1 2,-0.7 2,-0.1 -5,-0.0 0.865 104.6 67.7 -56.3 -39.6 -21.2 -4.5 -9.2 65 124 A N S S- 0 0 76 1,-0.1 3,-0.4 -6,-0.1 -1,-0.1 -0.795 71.1-168.7 -81.4 111.6 -22.6 -6.7 -6.5 66 125 A D S S+ 0 0 156 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.1 0.138 78.0 53.1 -88.4 19.3 -20.8 -5.6 -3.3 67 126 A D 0 0 134 1,-0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.266 360.0 360.0-153.3 56.7 -22.2 -8.7 -1.3 68 127 A E 0 0 182 -3,-0.4 -2,-0.1 -5,-0.0 -1,-0.0 0.885 360.0 360.0 -77.5 360.0 -21.5 -12.0 -3.1