==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 10-MAR-06 2GBN . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.M.FERRARO,D.J.FERRARO,S.RAMASWAMY,A.D.ROBERTSON . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4699.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 59.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 72 0, 0.0 16,-3.0 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 138.7 4.2 -4.4 5.0 2 2 A Q E +A 16 0A 89 14,-0.2 70,-3.9 12,-0.0 71,-0.4 -0.695 360.0 177.5 -86.9 143.3 3.6 -7.1 7.6 3 3 A I E -A 15 0A 0 12,-2.1 12,-2.8 -2,-0.3 2,-0.4 -0.915 22.0-132.7-127.0 165.4 2.5 -10.6 6.9 4 4 A F E -Ab 14 74A 48 69,-2.8 71,-2.8 -2,-0.3 2,-0.4 -0.953 17.7-165.7-118.6 139.3 2.0 -13.4 9.3 5 5 A V E -Ab 13 75A 0 8,-2.7 8,-2.8 -2,-0.4 2,-0.6 -0.975 13.3-146.7-129.5 119.1 3.4 -16.9 8.7 6 6 A K E -Ab 12 76A 94 69,-2.6 71,-2.5 -2,-0.4 6,-0.2 -0.783 26.1-148.9 -80.8 121.9 2.4 -20.1 10.5 7 7 A T > - 0 0 5 4,-2.8 3,-1.8 -2,-0.6 -1,-0.0 -0.323 29.5 -97.7 -86.8 172.1 5.5 -22.3 10.7 8 8 A L T 3 S+ 0 0 69 1,-0.3 -1,-0.1 2,-0.1 71,-0.1 0.755 124.4 59.7 -62.2 -25.4 5.7 -26.2 10.8 9 9 A T T 3 S- 0 0 65 2,-0.1 -1,-0.3 28,-0.1 3,-0.1 0.580 120.3-109.7 -78.3 -12.2 5.9 -26.0 14.6 10 10 A G S < S+ 0 0 43 -3,-1.8 2,-0.2 1,-0.4 -2,-0.1 0.385 75.0 137.7 96.8 2.3 2.5 -24.2 14.7 11 11 A K - 0 0 71 -5,-0.1 -4,-2.8 1,-0.0 2,-0.6 -0.524 49.6-137.3 -74.3 141.6 4.2 -20.9 15.8 12 12 A T E -A 6 0A 87 -6,-0.2 2,-0.4 -2,-0.2 -6,-0.2 -0.924 21.7-168.3-105.9 118.5 2.9 -17.7 14.1 13 13 A I E -A 5 0A 23 -8,-2.8 -8,-2.7 -2,-0.6 2,-0.3 -0.878 12.9-143.4-106.8 132.8 5.7 -15.3 13.1 14 14 A T E -A 4 0A 53 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.722 24.1-177.9 -92.7 141.4 5.2 -11.7 12.0 15 15 A L E -A 3 0A 14 -12,-2.8 -12,-2.1 -2,-0.3 2,-0.4 -0.992 28.0-132.1-145.1 135.2 7.5 -10.4 9.2 16 16 A E E +A 2 0A 148 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.724 42.0 169.9 -81.7 131.2 8.0 -7.1 7.4 17 17 A V - 0 0 1 -16,-3.0 -2,-0.0 -2,-0.4 3,-0.0 -0.953 27.2-137.5-138.2 160.4 8.1 -7.9 3.6 18 18 A E > - 0 0 105 -2,-0.3 3,-1.8 1,-0.1 46,-0.4 -0.818 30.1-114.1-113.7 156.0 8.1 -6.1 0.4 19 19 A P T 3 S+ 0 0 49 0, 0.0 46,-2.3 0, 0.0 45,-0.3 0.833 117.1 59.1 -51.7 -32.1 6.3 -6.9 -2.8 20 20 A S T 3 S+ 0 0 89 44,-0.2 2,-0.1 43,-0.1 -3,-0.0 0.577 78.8 113.7 -73.8 -11.0 9.6 -7.5 -4.4 21 21 A D < - 0 0 23 -3,-1.8 43,-2.2 42,-0.1 44,-0.2 -0.444 65.7-132.2 -63.7 132.1 10.6 -10.3 -1.9 22 22 A T B > -E 63 0B 34 41,-0.2 4,-2.4 -2,-0.1 3,-0.3 -0.522 19.6-116.9 -74.6 151.3 10.8 -13.7 -3.4 23 23 A I H > S+ 0 0 0 39,-2.4 4,-2.8 36,-0.5 5,-0.2 0.914 118.2 58.0 -54.3 -42.1 9.1 -16.5 -1.7 24 24 A E H > S+ 0 0 112 36,-2.8 4,-2.0 38,-0.3 -1,-0.2 0.894 107.2 47.3 -50.4 -44.4 12.5 -18.1 -1.2 25 25 A N H > S+ 0 0 82 35,-0.3 4,-2.3 -3,-0.3 -2,-0.2 0.922 110.1 51.0 -73.7 -37.4 13.6 -14.9 0.7 26 26 A V H X S+ 0 0 0 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.944 109.7 51.8 -61.0 -45.8 10.5 -14.8 2.9 27 27 A K H X S+ 0 0 6 -4,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.918 110.0 48.7 -57.1 -44.9 11.0 -18.5 3.8 28 28 A A H X S+ 0 0 41 -4,-2.0 4,-2.4 -5,-0.2 -1,-0.2 0.909 111.7 48.5 -64.6 -41.5 14.6 -17.8 4.8 29 29 A K H X S+ 0 0 67 -4,-2.3 4,-2.8 2,-0.2 -2,-0.2 0.907 109.7 52.4 -64.6 -40.6 13.6 -14.8 6.9 30 30 A I H X S+ 0 0 0 -4,-2.7 4,-2.4 2,-0.2 5,-0.3 0.941 111.4 47.1 -59.7 -45.4 10.8 -16.7 8.7 31 31 A Q H X S+ 0 0 32 -4,-2.1 4,-2.0 2,-0.2 5,-0.4 0.889 111.0 51.0 -66.2 -39.4 13.3 -19.5 9.6 32 32 A D H < S+ 0 0 133 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.941 111.2 49.8 -60.1 -49.6 15.9 -16.9 10.8 33 33 A K H < S+ 0 0 127 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.922 112.6 43.4 -51.8 -51.3 13.2 -15.3 13.0 34 34 A E H < S- 0 0 30 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.794 97.2-162.9 -77.8 -22.8 12.0 -18.5 14.7 35 35 A G < - 0 0 49 -4,-2.0 -3,-0.1 -5,-0.3 -4,-0.1 0.887 54.5 -41.2 52.9 71.2 15.6 -19.5 15.0 36 36 A G S S+ 0 0 50 -5,-0.4 2,-0.3 1,-0.2 3,-0.2 0.839 94.1 142.2 50.2 47.2 16.0 -23.2 15.7 37 37 A G + 0 0 23 1,-0.2 -1,-0.2 2,-0.1 -28,-0.1 -0.799 45.6 45.8-112.5 160.5 13.1 -23.6 18.1 38 38 A G S S- 0 0 68 -2,-0.3 -1,-0.2 1,-0.2 3,-0.1 0.841 149.9 -35.3 79.2 34.9 10.6 -26.5 18.5 39 39 A G S S+ 0 0 75 -3,-0.2 2,-5.1 1,-0.1 3,-0.3 0.278 93.2 164.5 94.9 -5.5 13.5 -29.0 18.3 40 40 A G + 0 0 13 1,-0.2 -1,-0.1 2,-0.2 -2,-0.1 -0.026 12.9 146.6 -45.6 58.0 15.1 -26.6 15.8 41 41 A G S S- 0 0 79 -2,-5.1 -1,-0.2 1,-0.1 -2,-0.1 0.997 104.3 -28.9 -55.6 -65.3 18.5 -28.4 16.2 42 42 A G S S- 0 0 72 -3,-0.3 -2,-0.2 1,-0.2 -1,-0.1 -0.036 99.2-152.2-130.3 28.0 18.9 -27.5 12.6 43 43 A G - 0 0 42 -4,-0.3 -1,-0.2 1,-0.1 -5,-0.1 0.220 44.1 -42.7 35.0-156.2 15.1 -27.6 11.9 44 44 A I - 0 0 58 37,-0.0 -1,-0.1 2,-0.0 -36,-0.1 -0.927 69.1-112.5 -95.7 126.1 13.7 -28.4 8.5 45 45 A P > - 0 0 51 0, 0.0 3,-2.0 0, 0.0 -2,-0.1 -0.264 23.1-124.6 -54.8 137.0 15.8 -26.6 5.8 46 46 A P G > S+ 0 0 41 0, 0.0 3,-1.7 0, 0.0 -18,-0.0 0.813 109.2 65.9 -64.4 -23.0 13.6 -24.0 4.1 47 47 A D G 3 S+ 0 0 111 1,-0.3 13,-0.1 3,-0.0 -23,-0.0 0.702 98.5 56.4 -68.6 -12.6 14.2 -25.5 0.7 48 48 A Q G < S+ 0 0 61 -3,-2.0 32,-2.7 2,-0.0 2,-0.3 0.048 103.3 71.2-101.5 22.8 12.2 -28.6 2.0 49 49 A Q E < -C 79 0A 4 -3,-1.7 2,-0.3 30,-0.3 30,-0.2 -0.908 66.3-151.5-128.9 158.6 9.2 -26.4 2.9 50 50 A R E -C 78 0A 61 28,-2.2 28,-2.6 -2,-0.3 2,-0.5 -0.977 14.9-130.4-131.6 148.2 6.6 -24.6 0.7 51 51 A L E -C 77 0A 1 7,-0.4 7,-2.6 -2,-0.3 2,-0.4 -0.859 21.8-159.8-101.8 127.9 4.7 -21.4 1.5 52 52 A I E -CD 76 57A 32 24,-3.4 24,-2.2 -2,-0.5 2,-0.4 -0.930 7.9-173.5-112.7 130.2 0.9 -21.6 1.0 53 53 A F E > S- D 0 56A 45 3,-2.7 3,-2.5 -2,-0.4 22,-0.1 -0.988 70.2 -23.7-122.7 118.5 -1.3 -18.5 0.5 54 54 A A T 3 S- 0 0 86 20,-0.5 -1,-0.1 -2,-0.4 3,-0.1 0.878 128.6 -45.1 56.1 41.6 -5.1 -18.8 0.4 55 55 A G T 3 S+ 0 0 78 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.400 116.9 114.1 82.4 -3.1 -5.1 -22.4 -0.7 56 56 A K E < -D 53 0A 123 -3,-2.5 -3,-2.7 0, 0.0 2,-0.7 -0.879 65.0-132.3-107.8 130.3 -2.3 -21.9 -3.3 57 57 A Q E -D 52 0A 93 -2,-0.5 -5,-0.2 -5,-0.2 2,-0.2 -0.650 30.5-140.0 -71.8 116.7 1.2 -23.3 -3.2 58 58 A L - 0 0 2 -7,-2.6 2,-0.5 -2,-0.7 -7,-0.4 -0.459 12.7-115.1 -81.8 146.2 3.6 -20.4 -4.0 59 59 A E > - 0 0 108 -2,-0.2 3,-1.6 1,-0.1 -36,-0.5 -0.712 17.1-138.1 -84.1 127.4 6.7 -20.7 -6.3 60 60 A D T 3 S+ 0 0 38 -2,-0.5 -36,-2.8 1,-0.3 -35,-0.3 0.849 101.6 50.3 -48.8 -40.9 9.9 -20.2 -4.4 61 61 A G T 3 S+ 0 0 63 -38,-0.2 -1,-0.3 -39,-0.1 2,-0.1 0.554 96.6 83.3 -84.6 -8.1 11.4 -18.1 -7.2 62 62 A R S < S- 0 0 113 -3,-1.6 -39,-2.4 1,-0.1 -38,-0.3 -0.408 76.7-113.0 -93.9 168.1 8.4 -15.7 -7.6 63 63 A T B > -E 22 0B 29 -41,-0.3 3,-0.9 -2,-0.1 4,-0.4 -0.625 21.7-114.3-100.2 159.4 7.7 -12.5 -5.7 64 64 A L G > >S+ 0 0 1 -43,-2.2 3,-2.1 -46,-0.4 5,-1.2 0.887 116.5 63.5 -53.7 -38.1 4.8 -11.7 -3.3 65 65 A S G > 5S+ 0 0 54 -46,-2.3 3,-1.3 1,-0.3 -1,-0.2 0.847 91.2 64.1 -54.8 -36.9 3.7 -9.1 -5.9 66 66 A D G < 5S+ 0 0 78 -3,-0.9 -1,-0.3 -47,-0.3 -2,-0.2 0.700 109.9 39.0 -62.8 -25.2 3.1 -11.9 -8.3 67 67 A Y G < 5S- 0 0 28 -3,-2.1 -1,-0.3 -4,-0.4 -2,-0.2 0.348 106.8-122.1-107.9 3.6 0.3 -13.2 -5.9 68 68 A N T < 5 - 0 0 130 -3,-1.3 2,-0.6 -4,-0.5 -3,-0.2 0.911 43.2-179.2 52.4 45.3 -1.1 -9.8 -4.9 69 69 A I < - 0 0 8 -5,-1.2 -1,-0.2 -50,-0.1 2,-0.1 -0.724 9.5-156.8 -79.6 117.3 -0.3 -10.6 -1.2 70 70 A Q > - 0 0 136 -2,-0.6 3,-1.0 1,-0.2 -1,-0.0 -0.332 27.9 -70.7 -90.6 166.9 -1.5 -7.7 0.9 71 71 A K T 3 S+ 0 0 132 1,-0.2 -68,-0.2 -2,-0.1 -1,-0.2 -0.243 113.3 15.2 -58.5 144.2 -0.5 -6.5 4.4 72 72 A E T 3 S+ 0 0 102 -70,-3.9 2,-0.3 1,-0.2 -1,-0.2 0.744 85.5 146.1 61.1 33.3 -1.5 -8.6 7.4 73 73 A S < - 0 0 24 -3,-1.0 -69,-2.8 -71,-0.4 2,-0.5 -0.642 46.2-129.3 -88.6 150.0 -2.4 -11.8 5.3 74 74 A T E +b 4 0A 65 -2,-0.3 -20,-0.5 -71,-0.2 2,-0.3 -0.926 28.6 179.0-106.8 129.1 -1.6 -15.1 7.0 75 75 A L E -b 5 0A 0 -71,-2.8 -69,-2.6 -2,-0.5 2,-0.3 -0.722 13.5-142.8-119.1 168.7 0.4 -17.6 5.0 76 76 A H E -bC 6 52A 79 -24,-2.2 -24,-3.4 -2,-0.3 2,-0.4 -0.989 5.5-132.7-142.6 147.0 1.5 -21.1 6.1 77 77 A L E - C 0 51A 13 -71,-2.5 2,-0.3 -2,-0.3 -26,-0.2 -0.796 23.4-173.3 -97.9 137.5 4.5 -23.4 5.7 78 78 A V E - C 0 50A 49 -28,-2.6 -28,-2.2 -2,-0.4 2,-0.4 -0.905 28.2-101.9-126.7 161.5 4.1 -27.0 4.8 79 79 A L E + C 0 49A 74 -2,-0.3 -30,-0.3 -30,-0.2 2,-0.3 -0.615 35.0 168.0 -85.8 130.5 6.6 -29.8 4.5 80 80 A R 0 0 99 -32,-2.7 -1,-0.0 -2,-0.4 -2,-0.0 -0.742 360.0 360.0-137.8 89.7 8.0 -30.9 1.1 81 81 A L 0 0 146 -2,-0.3 -32,-0.0 -37,-0.0 -33,-0.0 -0.343 360.0 360.0 -80.2 360.0 11.0 -33.2 1.8