==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 20-FEB-09 3GBL . COMPND 2 MOLECULE: BETA2-MICROGLOBULIN; . SOURCE 2 ORGANISM_SCIENTIFIC: CTENOPHARYNGODON IDELLA; . AUTHOR W.CHEN,F.GAO,C.XIA,G.F.GAO . 97 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6325.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 43 44.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 218 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -78.3 29.4 -20.8 -3.6 2 2 A V + 0 0 64 30,-0.0 2,-0.3 28,-0.0 28,-0.0 -0.645 360.0 163.2-114.5 139.0 26.9 -18.8 -5.6 3 3 A S B -A 31 0A 41 28,-2.4 28,-2.8 -2,-0.3 0, 0.0 -0.985 34.2-121.2-142.6 138.7 23.3 -17.6 -5.9 4 4 A S - 0 0 92 -2,-0.3 24,-0.0 26,-0.2 81,-0.0 -0.392 35.8-100.1 -73.9 145.9 21.8 -14.7 -7.9 5 5 A P - 0 0 25 0, 0.0 2,-0.5 0, 0.0 24,-0.2 -0.341 23.6-133.2 -62.0 140.2 19.8 -11.9 -6.1 6 6 A K E -B 28 0B 126 22,-3.5 22,-2.1 2,-0.0 2,-0.5 -0.879 28.0-157.4 -84.2 131.8 16.0 -12.0 -6.2 7 7 A I E +B 27 0B 23 -2,-0.5 2,-0.5 20,-0.2 20,-0.2 -0.958 15.4 178.3-122.8 118.2 15.0 -8.4 -7.2 8 8 A Q E -B 26 0B 83 18,-2.5 18,-2.8 -2,-0.5 2,-0.5 -0.967 6.4-168.1-124.7 120.9 11.5 -7.0 -6.4 9 9 A V E +B 25 0B 24 -2,-0.5 85,-0.5 16,-0.2 2,-0.3 -0.893 23.2 138.4-114.4 126.1 10.5 -3.4 -7.3 10 10 A Y E -B 24 0B 96 14,-2.3 14,-3.2 -2,-0.5 2,-0.3 -0.958 43.3-107.6-152.6 168.9 7.4 -1.8 -6.0 11 11 A S E -B 23 0B 26 -2,-0.3 12,-0.2 12,-0.2 4,-0.1 -0.699 20.3-130.2-102.5 158.1 5.9 1.4 -4.5 12 12 A H S S+ 0 0 110 10,-2.0 -1,-0.1 -2,-0.3 11,-0.1 0.919 95.0 22.9 -70.1 -42.5 4.8 2.1 -1.0 13 13 A Y S S- 0 0 143 9,-0.2 9,-0.1 1,-0.1 -2,-0.1 -0.734 112.9 -63.9-116.3 165.4 1.4 3.4 -2.0 14 14 A P - 0 0 97 0, 0.0 2,-1.7 0, 0.0 -1,-0.1 -0.291 56.6-121.3 -49.8 131.9 -0.7 2.8 -5.1 15 15 A G + 0 0 14 80,-0.2 2,-0.3 -4,-0.1 82,-0.2 -0.484 47.3 160.7 -90.0 67.8 1.3 4.2 -8.0 16 16 A E > - 0 0 98 -2,-1.7 3,-1.3 4,-0.1 -3,-0.0 -0.642 46.9 -94.8 -81.6 145.6 -1.0 6.8 -9.5 17 17 A Y T 3 S+ 0 0 80 -2,-0.3 56,-0.2 1,-0.2 -1,-0.1 -0.246 104.0 14.7 -68.1 141.5 0.5 9.6 -11.7 18 18 A G T 3 S+ 0 0 34 54,-2.3 2,-0.4 1,-0.2 -1,-0.2 0.290 96.3 122.1 76.5 -9.8 1.4 12.9 -10.2 19 19 A K < - 0 0 111 -3,-1.3 -1,-0.2 53,-0.3 2,-0.1 -0.736 68.8-116.2 -88.1 131.0 1.2 11.6 -6.7 20 20 A E + 0 0 134 -2,-0.4 2,-0.3 51,-0.2 51,-0.2 -0.376 53.7 149.4 -58.0 135.8 4.1 11.7 -4.3 21 21 A N E - C 0 70B 5 49,-2.2 49,-2.5 -2,-0.1 2,-0.4 -0.890 44.4-100.7-157.9 179.0 5.2 8.2 -3.4 22 22 A T E - C 0 69B 42 -2,-0.3 -10,-2.0 47,-0.3 2,-0.5 -0.987 20.7-148.2-122.9 129.6 8.2 5.9 -2.5 23 23 A L E -BC 11 68B 0 45,-2.8 45,-1.5 -2,-0.4 2,-0.4 -0.840 23.0-168.8 -91.9 126.0 10.0 3.7 -4.9 24 24 A I E -BC 10 67B 16 -14,-3.2 -14,-2.3 -2,-0.5 2,-0.5 -0.942 15.4-167.2-124.4 138.7 11.3 0.6 -3.1 25 25 A a E -BC 9 66B 0 41,-2.7 41,-2.2 -2,-0.4 2,-0.5 -0.981 6.4-166.0-124.8 118.2 13.7 -2.2 -4.2 26 26 A Y E -BC 8 65B 54 -18,-2.8 -18,-2.5 -2,-0.5 2,-0.5 -0.912 7.1-173.3-106.1 126.7 13.9 -5.3 -2.2 27 27 A V E +BC 7 64B 0 37,-2.7 37,-2.4 -2,-0.5 2,-0.3 -0.968 16.0 151.9-125.7 125.7 16.9 -7.5 -2.9 28 28 A S E +BC 6 63B 10 -22,-2.1 -22,-3.5 -2,-0.5 35,-0.2 -0.929 39.3 42.5-147.9 168.1 17.4 -11.0 -1.3 29 29 A G + 0 0 25 33,-1.6 2,-0.3 -2,-0.3 34,-0.1 0.656 69.9 148.9 71.4 17.8 18.8 -14.5 -1.6 30 30 A F - 0 0 0 32,-0.4 32,-0.3 -24,-0.1 -1,-0.2 -0.711 36.7-137.7 -92.1 137.1 22.1 -13.5 -3.0 31 31 A H B S+A 3 0A 55 -28,-2.8 -28,-2.4 -2,-0.3 53,-0.0 -0.981 85.1 38.1-132.5 125.9 25.5 -15.3 -2.4 32 32 A P S S- 0 0 50 0, 0.0 2,-2.9 0, 0.0 -1,-0.1 0.466 88.9-127.3 -77.8 166.1 28.0 -13.9 -1.9 33 33 A P S S+ 0 0 63 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.313 77.6 109.8 -74.5 58.0 26.8 -11.0 0.4 34 34 A D + 0 0 125 -2,-2.9 51,-0.6 2,-0.0 2,-0.3 -0.917 42.7 131.5-140.5 106.3 28.5 -8.5 -1.9 35 35 A I E -F 84 0C 27 -2,-0.4 2,-0.4 49,-0.1 49,-0.2 -0.982 39.2-147.2-154.0 153.7 26.2 -6.4 -3.9 36 36 A S E -F 83 0C 59 47,-1.9 47,-2.4 -2,-0.3 2,-0.4 -0.999 13.4-162.1-133.2 147.3 25.3 -2.9 -5.0 37 37 A I E -F 82 0C 2 -2,-0.4 2,-0.4 45,-0.2 45,-0.2 -0.961 7.5-179.8-125.4 135.6 21.8 -1.4 -5.7 38 38 A E E -F 81 0C 74 43,-2.6 43,-3.3 -2,-0.4 2,-0.5 -0.999 20.0-141.4-133.6 143.4 20.8 1.7 -7.6 39 39 A L E -F 80 0C 0 -2,-0.4 7,-3.5 7,-0.3 2,-0.3 -0.883 26.8-157.7 -99.6 128.4 17.4 3.2 -8.4 40 40 A L E -FG 79 45C 17 39,-2.6 39,-1.8 -2,-0.5 2,-0.5 -0.834 20.5-161.1-116.3 143.4 17.0 4.6 -11.8 41 41 A K E > S-FG 78 44C 88 3,-3.1 3,-1.6 -2,-0.3 37,-0.2 -0.982 91.9 -18.8-119.1 117.7 14.8 7.2 -13.5 42 42 A N T 3 S- 0 0 79 35,-3.4 36,-0.1 -2,-0.5 -1,-0.1 0.834 131.0 -52.0 47.0 41.3 14.9 6.7 -17.3 43 43 A G T 3 S+ 0 0 41 34,-0.4 2,-0.4 1,-0.2 -1,-0.3 0.489 116.3 115.9 82.1 4.3 18.1 4.8 -16.8 44 44 A E E < S-G 41 0C 146 -3,-1.6 -3,-3.1 1,-0.0 -1,-0.2 -0.908 74.5-103.1-111.5 135.9 19.8 7.5 -14.7 45 45 A V E -G 40 0C 91 -2,-0.4 2,-0.5 -5,-0.2 -5,-0.2 -0.257 31.5-133.0 -56.3 128.2 20.7 7.1 -11.1 46 46 A I > - 0 0 31 -7,-3.5 3,-0.6 1,-0.0 -7,-0.3 -0.754 25.1-129.6 -84.3 126.0 18.3 8.7 -8.7 47 47 A A T 3 S+ 0 0 84 -2,-0.5 -1,-0.0 1,-0.2 0, 0.0 -0.319 79.4 24.7 -76.5 155.0 20.1 10.8 -6.0 48 48 A D T 3 S+ 0 0 132 1,-0.2 21,-0.2 20,-0.1 -1,-0.2 0.768 76.8 158.2 65.1 30.4 19.6 10.6 -2.2 49 49 A A < - 0 0 20 -3,-0.6 2,-0.4 19,-0.1 19,-0.2 -0.550 32.9-137.9 -77.1 148.1 18.3 7.0 -2.2 50 50 A Q E -D 67 0B 119 17,-3.0 17,-2.4 -2,-0.2 2,-0.4 -0.930 12.6-158.9-117.1 139.9 18.6 5.3 1.1 51 51 A Q E -D 66 0B 77 -2,-0.4 15,-0.2 15,-0.2 3,-0.1 -0.950 16.8-127.0-121.5 129.3 19.7 1.7 1.7 52 52 A T - 0 0 68 13,-2.9 2,-0.1 -2,-0.4 3,-0.1 -0.168 40.5 -89.3 -61.1 163.4 19.0 -0.4 4.8 53 53 A D - 0 0 148 1,-0.1 12,-0.2 11,-0.1 -1,-0.1 -0.496 58.6 -84.3 -68.1 150.1 21.9 -2.1 6.6 54 54 A L - 0 0 83 -2,-0.1 2,-0.3 10,-0.1 10,-0.2 -0.368 49.8-151.2 -58.1 124.0 22.7 -5.6 5.2 55 55 A A E -E 63 0B 23 8,-2.5 8,-1.6 -2,-0.1 2,-0.4 -0.766 10.4-166.0 -97.7 149.6 20.4 -8.1 7.0 56 56 A F E -E 62 0B 114 -2,-0.3 2,-0.4 6,-0.2 6,-0.2 -0.978 10.8-176.8-138.0 121.3 21.3 -11.7 7.6 57 57 A E E >> -E 61 0B 88 4,-3.6 4,-2.4 -2,-0.4 3,-1.8 -0.947 54.3 -6.8-129.8 142.1 18.7 -14.3 8.6 58 58 A K T 34 S- 0 0 190 -2,-0.4 -1,-0.1 1,-0.3 0, 0.0 0.785 113.6 -70.3 55.0 32.7 18.5 -18.0 9.6 59 59 A G T 34 S+ 0 0 62 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.480 131.1 45.0 73.3 5.3 22.2 -18.7 8.8 60 60 A W T <4 S+ 0 0 158 -3,-1.8 2,-0.5 1,-0.2 -2,-0.2 0.561 84.3 86.0-149.6 -23.6 21.8 -18.3 5.0 61 61 A Q E < - E 0 57B 39 -4,-2.4 -4,-3.6 -32,-0.0 2,-0.3 -0.856 43.2-173.5-111.6 123.7 19.7 -15.4 3.8 62 62 A F E + E 0 56B 33 -2,-0.5 -33,-1.6 -32,-0.3 -32,-0.4 -0.827 10.4 177.0-104.1 145.2 20.9 -11.8 3.1 63 63 A H E -CE 28 55B 31 -8,-1.6 -8,-2.5 -2,-0.3 2,-0.3 -0.994 9.5-175.7-151.7 150.8 18.5 -9.0 2.2 64 64 A L E -C 27 0B 6 -37,-2.4 -37,-2.7 -2,-0.3 2,-0.4 -0.992 10.7-152.3-142.5 146.1 18.7 -5.2 1.5 65 65 A T E -C 26 0B 31 -2,-0.3 -13,-2.9 -39,-0.2 2,-0.4 -0.987 8.0-173.5-122.6 129.2 16.2 -2.5 0.8 66 66 A K E +CD 25 51B 23 -41,-2.2 -41,-2.7 -2,-0.4 2,-0.3 -0.973 15.1 170.0-116.4 136.5 16.9 0.7 -1.2 67 67 A S E +CD 24 50B 38 -17,-2.4 -17,-3.0 -2,-0.4 2,-0.3 -0.963 11.7 173.1-142.5 157.1 14.2 3.4 -1.4 68 68 A V E -C 23 0B 16 -45,-1.5 -45,-2.8 -2,-0.3 2,-0.2 -0.968 38.9 -98.2-158.9 150.8 13.7 7.0 -2.6 69 69 A S E +C 22 0B 66 -2,-0.3 2,-0.3 -47,-0.2 -47,-0.3 -0.507 49.2 169.7 -68.8 140.4 10.8 9.5 -3.0 70 70 A F E -C 21 0B 10 -49,-2.5 -49,-2.2 -2,-0.2 -2,-0.0 -0.977 34.8-145.4-145.8 165.3 9.4 9.7 -6.5 71 71 A K - 0 0 112 -2,-0.3 -51,-0.2 -51,-0.2 2,-0.1 -0.844 29.7-144.9-129.8 94.3 6.5 11.1 -8.4 72 72 A P - 0 0 1 0, 0.0 -54,-2.3 0, 0.0 -53,-0.3 -0.377 18.5-176.7 -68.2 134.3 5.6 8.7 -11.2 73 73 A E > - 0 0 83 -56,-0.2 3,-1.3 -55,-0.1 -2,-0.0 -0.884 38.7-103.0-120.3 161.3 4.4 10.1 -14.5 74 74 A K T 3 S+ 0 0 157 -2,-0.3 23,-0.0 1,-0.3 -1,-0.0 0.777 114.3 44.5 -50.3 -43.6 3.2 8.1 -17.6 75 75 A S T 3 S+ 0 0 104 2,-0.1 2,-0.3 -3,-0.0 -1,-0.3 0.555 93.0 96.6 -88.2 -8.7 6.3 8.5 -19.8 76 76 A D < - 0 0 39 -3,-1.3 2,-0.6 -35,-0.0 -3,-0.0 -0.668 60.1-148.5 -93.2 135.7 9.0 7.8 -17.1 77 77 A E - 0 0 72 -2,-0.3 -35,-3.4 -5,-0.0 -34,-0.4 -0.905 11.9-167.3-103.4 120.5 10.6 4.4 -16.6 78 78 A Y E +F 41 0C 9 -2,-0.6 15,-3.0 15,-0.3 2,-0.3 -0.840 17.5 164.6-101.3 141.3 11.6 3.6 -13.0 79 79 A S E -FH 40 92C 0 -39,-1.8 -39,-2.6 -2,-0.4 2,-0.5 -0.964 36.4-123.3-151.0 164.6 13.9 0.6 -12.4 80 80 A a E -FH 39 91C 0 11,-2.4 11,-3.0 -2,-0.3 2,-0.5 -0.987 22.1-161.9-114.5 127.1 16.1 -1.2 -9.9 81 81 A S E -FH 38 90C 24 -43,-3.3 -43,-2.6 -2,-0.5 2,-0.5 -0.952 10.7-177.4-113.5 118.1 19.7 -1.9 -11.1 82 82 A V E -FH 37 89C 1 7,-2.5 7,-2.8 -2,-0.5 2,-0.5 -0.971 10.4-162.9-125.9 120.2 21.5 -4.5 -9.1 83 83 A R E +FH 36 88C 115 -47,-2.4 -47,-1.9 -2,-0.5 2,-0.4 -0.919 18.1 164.1-105.7 122.9 25.1 -5.6 -9.7 84 84 A H E > S-FH 35 87C 10 3,-2.4 3,-1.5 -2,-0.5 -49,-0.1 -0.998 70.1 -0.1-140.2 133.8 26.2 -8.9 -8.2 85 85 A M T 3 S- 0 0 70 -51,-0.6 -1,-0.1 -2,-0.4 3,-0.1 0.902 130.2 -60.3 50.2 46.1 29.4 -10.8 -9.1 86 86 A S T 3 S+ 0 0 92 1,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.687 115.2 112.8 57.9 24.3 30.2 -8.0 -11.7 87 87 A K E < -H 84 0C 156 -3,-1.5 -3,-2.4 2,-0.0 2,-0.5 -0.995 56.8-146.9-124.5 126.7 26.9 -8.6 -13.6 88 88 A T E -H 83 0C 77 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.3 -0.807 11.3-169.4 -98.0 130.6 24.2 -5.9 -13.6 89 89 A K E -H 82 0C 123 -7,-2.8 -7,-2.5 -2,-0.5 2,-0.5 -0.975 6.5-156.8-115.8 127.2 20.6 -6.9 -13.7 90 90 A K E -H 81 0C 95 -2,-0.4 2,-0.5 -9,-0.2 -9,-0.2 -0.909 6.0-169.9-108.4 129.9 17.9 -4.2 -14.3 91 91 A I E -H 80 0C 43 -11,-3.0 -11,-2.4 -2,-0.5 2,-0.2 -0.967 17.6-138.3-120.2 115.1 14.3 -4.8 -13.2 92 92 A V E -H 79 0C 72 -2,-0.5 2,-0.4 -13,-0.2 -13,-0.3 -0.501 24.1-109.9 -73.6 133.0 11.7 -2.3 -14.4 93 93 A W - 0 0 21 -15,-3.0 2,-1.1 -2,-0.2 -15,-0.3 -0.542 28.8-143.8 -61.0 117.8 9.0 -1.0 -12.0 94 94 A E + 0 0 150 -85,-0.5 -1,-0.1 -2,-0.4 -15,-0.0 -0.768 26.1 175.0 -92.5 92.9 5.8 -2.7 -13.3 95 95 A S - 0 0 42 -2,-1.1 -80,-0.2 -85,-0.1 -1,-0.2 0.937 24.6-148.3 -72.7 -52.5 3.3 0.1 -12.6 96 96 A N 0 0 128 1,-0.0 -2,-0.1 0, 0.0 -1,-0.0 0.751 360.0 360.0 66.0 32.7 -0.0 -1.2 -14.1 97 97 A M 0 0 131 -82,-0.2 -80,-0.1 -23,-0.0 -3,-0.1 0.642 360.0 360.0-112.9 360.0 -0.2 1.8 -14.5