==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 13-MAR-98 1GCC . COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*GP*CP*CP*GP*CP*CP*AP*GP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.YAMASAKI,M.D.ALLEN,M.OHME-TAKAGI,M.TATENO,M.SUZUKI . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5052.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 60.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 22.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 23.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 144 A K 0 0 210 0, 0.0 2,-0.2 0, 0.0 35,-0.1 0.000 360.0 360.0 360.0 154.9 25.7 13.0 7.6 2 145 A H - 0 0 168 5,-0.0 2,-0.3 35,-0.0 5,-0.1 -0.654 360.0-156.7-104.6 171.4 26.4 15.6 10.3 3 146 A Y > - 0 0 40 3,-0.5 3,-1.1 -2,-0.2 2,-0.2 -0.943 28.4 -76.3-149.6 162.9 24.3 15.9 13.5 4 147 A R T 3 S+ 0 0 98 -2,-0.3 39,-0.2 1,-0.3 54,-0.1 -0.470 118.7 3.1 -69.7 127.0 23.3 18.3 16.3 5 148 A G T 3 S+ 0 0 23 -2,-0.2 12,-1.8 1,-0.2 2,-0.4 0.065 105.0 128.6 79.6 -19.0 26.1 18.8 18.8 6 149 A V E < +A 16 0A 19 -3,-1.1 2,-0.5 10,-0.2 -3,-0.5 -0.573 32.8 177.5 -95.3 129.3 28.3 16.6 16.6 7 150 A R E -A 15 0A 92 8,-1.8 8,-2.2 -2,-0.4 2,-0.2 -0.968 25.9-131.3-135.5 109.1 31.7 17.7 15.5 8 151 A Q E -A 14 0A 130 -2,-0.5 6,-0.2 6,-0.2 -6,-0.0 -0.432 16.4-147.4 -58.7 126.3 34.2 15.7 13.4 9 152 A R E >> -A 13 0A 75 4,-2.9 3,-2.6 -2,-0.2 4,-1.3 -0.837 28.8-112.9 -94.0 137.3 37.7 15.7 14.8 10 153 A P T 34 S+ 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.619 111.7 62.1 -65.0 -20.3 40.2 15.6 11.9 11 154 A W T 34 S- 0 0 195 1,-0.0 -3,-0.0 2,-0.0 0, 0.0 0.471 128.9 -88.2 -75.4 -4.1 41.6 12.0 12.6 12 155 A G T <4 S+ 0 0 49 -3,-2.6 2,-0.2 1,-0.3 -4,-0.1 0.799 87.0 118.5 102.1 38.8 38.1 10.7 12.0 13 156 A K E < -A 9 0A 56 -4,-1.3 -4,-2.9 -6,-0.1 2,-0.5 -0.799 53.4-125.8-124.8 170.8 36.2 10.8 15.3 14 157 A F E -AB 8 33A 40 19,-1.8 19,-2.2 -2,-0.2 -6,-0.2 -0.951 16.8-168.7-127.5 110.3 33.0 12.6 16.6 15 158 A A E -AB 7 32A 0 -8,-2.2 -8,-1.8 -2,-0.5 2,-0.4 -0.482 12.3-148.1 -77.4 163.4 32.7 14.8 19.6 16 159 A A E +AB 6 31A 0 15,-1.9 14,-1.9 -10,-0.2 15,-0.7 -0.968 19.7 169.8-140.4 122.9 29.3 15.9 21.0 17 160 A E E - B 0 29A 33 -12,-1.8 2,-0.3 -2,-0.4 12,-0.2 -0.867 12.7-163.8-112.2 159.3 28.6 19.2 22.7 18 161 A I E - B 0 28A 8 10,-1.2 10,-1.6 -2,-0.3 2,-0.5 -0.983 20.1-129.5-132.5 149.4 25.4 20.8 23.7 19 162 A R E - B 0 27A 166 -2,-0.3 8,-0.2 8,-0.2 7,-0.1 -0.864 20.0-152.4 -93.1 129.7 25.0 24.5 24.7 20 163 A D E > - B 0 26A 8 6,-2.9 6,-1.2 -2,-0.5 5,-0.9 -0.913 12.2-172.3-104.7 109.8 23.0 24.9 28.0 21 164 A P T > 5S+ 0 0 100 0, 0.0 3,-1.4 0, 0.0 -1,-0.1 0.714 84.6 63.8 -76.0 -23.2 21.1 28.2 28.4 22 165 A A T 3 5S+ 0 0 99 1,-0.3 -2,-0.0 2,-0.1 28,-0.0 0.874 104.2 48.6 -67.2 -35.0 20.1 27.6 32.0 23 166 A K T 3 5S- 0 0 133 -3,-0.2 -1,-0.3 3,-0.1 3,-0.1 0.045 133.2-100.5 -83.0 19.6 23.9 27.8 32.7 24 167 A N T < 5S- 0 0 154 -3,-1.4 -2,-0.1 1,-0.2 -4,-0.0 0.928 83.1 -38.0 54.2 56.7 23.8 31.0 30.6 25 168 A G S > S- 0 0 66 -21,-0.1 4,-1.7 1,-0.1 3,-0.6 -0.783 77.7-129.2-114.3 153.0 30.6 6.9 15.2 36 179 A A H 3> S+ 0 0 8 -2,-0.3 4,-2.0 1,-0.2 5,-0.1 0.848 110.5 55.4 -66.7 -35.8 28.7 10.1 14.2 37 180 A E H 3> S+ 0 0 103 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.641 107.8 48.3 -70.9 -21.6 25.3 8.4 15.2 38 181 A D H <> S+ 0 0 75 -3,-0.6 4,-1.4 2,-0.2 -2,-0.2 0.808 112.2 47.8 -91.3 -33.3 26.6 7.6 18.7 39 182 A A H X S+ 0 0 0 -4,-1.7 4,-1.8 2,-0.2 -2,-0.2 0.890 115.6 46.9 -60.3 -44.5 27.9 11.2 19.2 40 183 A A H X S+ 0 0 0 -4,-2.0 4,-1.5 1,-0.2 18,-0.4 0.818 109.6 52.1 -72.8 -33.0 24.5 12.3 17.9 41 184 A L H X S+ 0 0 55 -4,-1.0 4,-1.5 2,-0.2 -1,-0.2 0.791 105.7 56.3 -72.1 -26.5 22.7 9.9 20.2 42 185 A A H X S+ 0 0 20 -4,-1.4 4,-2.0 1,-0.2 3,-0.2 0.951 109.1 45.4 -67.4 -45.9 24.7 11.4 23.1 43 186 A Y H X S+ 0 0 22 -4,-1.8 4,-2.8 -39,-0.2 5,-0.4 0.849 104.1 66.1 -56.9 -39.9 23.3 14.8 22.2 44 187 A D H X S+ 0 0 15 -4,-1.5 4,-1.2 1,-0.2 -1,-0.2 0.905 111.0 33.1 -50.5 -51.2 19.8 13.2 21.8 45 188 A R H X S+ 0 0 168 -4,-1.5 4,-1.8 -3,-0.2 -1,-0.2 0.817 115.5 58.4 -76.1 -34.3 19.7 12.4 25.6 46 189 A A H X S+ 0 0 17 -4,-2.0 4,-1.8 2,-0.2 -2,-0.2 0.922 109.2 43.1 -65.9 -46.2 21.7 15.6 26.7 47 190 A A H X S+ 0 0 0 -4,-2.8 4,-2.2 1,-0.2 5,-0.3 0.899 112.8 55.2 -60.2 -42.1 19.2 18.0 25.0 48 191 A F H X S+ 0 0 89 -4,-1.2 4,-1.7 -5,-0.4 -2,-0.2 0.830 107.1 49.8 -62.0 -35.0 16.4 15.8 26.5 49 192 A R H < S+ 0 0 226 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.922 115.0 41.1 -73.1 -44.2 17.8 16.2 30.1 50 193 A M H < S+ 0 0 65 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.797 125.3 37.3 -72.8 -28.1 18.2 20.1 30.0 51 194 A R H < S- 0 0 155 -4,-2.2 2,-0.5 -5,-0.2 -2,-0.2 0.692 92.1-148.1 -90.8 -25.2 14.8 20.5 28.2 52 195 A G S < S- 0 0 52 -4,-1.7 2,-0.2 -5,-0.3 -4,-0.1 -0.178 71.6 -13.4 79.9 -35.8 13.0 17.7 30.1 53 196 A S S S+ 0 0 66 -2,-0.5 0, 0.0 1,-0.2 0, 0.0 -0.914 107.4 64.1-171.3 178.8 10.8 17.0 27.0 54 197 A R + 0 0 226 -2,-0.2 2,-0.3 1,-0.2 -1,-0.2 0.970 70.0 160.4 51.8 74.0 9.9 18.6 23.6 55 198 A A - 0 0 31 -3,-0.1 2,-0.6 -11,-0.0 -1,-0.2 -0.872 48.0-125.5-130.0 156.9 13.3 18.6 21.9 56 199 A L + 0 0 114 -2,-0.3 2,-0.2 -9,-0.0 -9,-0.1 -0.927 51.0 166.0-105.6 109.9 15.0 18.8 18.4 57 200 A L - 0 0 24 -2,-0.6 -16,-0.1 1,-0.1 -13,-0.0 -0.556 51.5-118.3-126.3 177.6 17.2 15.7 18.2 58 201 A N S S+ 0 0 23 -18,-0.4 -17,-0.1 1,-0.2 -1,-0.1 0.824 111.0 25.9 -90.0 -38.7 19.2 13.5 15.9 59 202 A F S S- 0 0 67 -19,-0.3 2,-0.8 -18,-0.1 -1,-0.2 -0.697 72.1-170.7-129.6 76.1 17.1 10.3 16.6 60 203 A P > - 0 0 59 0, 0.0 3,-1.3 0, 0.0 -4,-0.0 -0.581 8.0-161.4 -63.1 104.6 13.6 11.2 17.6 61 204 A L T 3 S+ 0 0 162 -2,-0.8 -2,-0.0 1,-0.2 0, 0.0 0.407 79.3 81.0 -73.3 3.8 12.3 7.8 18.7 62 205 A R T 3 0 0 245 1,-0.1 -1,-0.2 0, 0.0 -3,-0.0 0.478 360.0 360.0 -82.7 -6.2 8.6 9.2 18.4 63 206 A V < 0 0 178 -3,-1.3 -2,-0.2 0, 0.0 -1,-0.1 0.635 360.0 360.0-127.2 360.0 8.8 8.6 14.5