==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 06-OCT-00 1GDV . COMPND 2 MOLECULE: CYTOCHROME C6; . SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYRA YEZOENSIS; . AUTHOR S.YAMADA,S.-Y.PARK,H.SHIMIZU,Y.SHIRO,T.OKU . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5092.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A > 0 0 99 0, 0.0 4,-3.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 125.8 27.7 16.7 47.6 2 2 A D H > + 0 0 92 2,-0.2 4,-3.5 1,-0.2 74,-0.2 0.915 360.0 43.7 -59.2 -43.1 28.7 19.1 44.8 3 3 A L H > S+ 0 0 75 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.828 117.5 47.1 -68.9 -31.9 32.2 17.5 44.4 4 4 A D H > S+ 0 0 97 2,-0.2 4,-1.0 1,-0.2 -2,-0.2 0.843 115.8 44.7 -75.3 -35.9 30.5 14.1 44.7 5 5 A N H X S+ 0 0 47 -4,-3.4 4,-2.2 2,-0.2 3,-0.3 0.887 108.5 57.6 -74.6 -38.0 28.0 15.3 42.1 6 6 A G H X S+ 0 0 0 -4,-3.5 4,-2.4 1,-0.2 -2,-0.2 0.848 104.3 53.0 -59.6 -34.0 30.7 16.8 40.0 7 7 A E H X S+ 0 0 75 -4,-1.2 4,-2.2 2,-0.2 -1,-0.2 0.856 107.8 49.4 -70.6 -33.7 32.3 13.4 39.8 8 8 A K H X S+ 0 0 115 -4,-1.0 4,-2.2 -3,-0.3 -2,-0.2 0.896 113.0 47.3 -69.0 -42.2 29.1 11.8 38.6 9 9 A V H X S+ 0 0 8 -4,-2.2 4,-1.9 2,-0.2 5,-0.3 0.901 112.0 50.8 -65.0 -43.3 28.7 14.5 35.9 10 10 A F H X>S+ 0 0 9 -4,-2.4 4,-3.1 1,-0.2 5,-1.8 0.909 110.6 49.4 -60.7 -46.4 32.3 14.1 34.9 11 11 A S H <5S+ 0 0 73 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.908 117.0 38.9 -61.4 -46.2 31.9 10.3 34.6 12 12 A A H <5S+ 0 0 84 -4,-2.2 -1,-0.2 -5,-0.1 -2,-0.2 0.721 133.4 21.8 -80.2 -18.7 28.8 10.5 32.5 13 13 A N H <5S+ 0 0 40 -4,-1.9 -3,-0.2 -5,-0.2 -2,-0.2 0.675 128.7 29.2-122.6 -21.0 29.8 13.4 30.4 14 14 A C T >X5S+ 0 0 26 -4,-3.1 4,-2.3 -5,-0.3 3,-1.6 0.639 93.7 79.0-117.0 -24.4 33.6 13.9 30.3 15 15 A A H 3>< + 0 0 27 -4,-2.3 3,-2.9 5,-0.2 4,-0.3 0.123 66.1 154.4-128.5 18.7 39.3 13.0 29.6 19 19 A A G >< S+ 0 0 51 -4,-1.3 3,-1.1 1,-0.3 -4,-0.0 -0.243 81.3 12.4 -49.8 134.3 39.2 9.9 31.8 20 20 A G G 3 S- 0 0 47 1,-0.2 -1,-0.3 65,-0.1 3,-0.1 0.622 132.9 -70.1 71.3 11.0 42.1 10.2 34.2 21 21 A G G < S+ 0 0 0 -3,-2.9 10,-3.1 1,-0.2 11,-0.3 0.623 103.7 121.4 81.4 12.8 42.6 13.9 33.3 22 22 A N < - 0 0 75 -3,-1.1 2,-0.3 -4,-0.3 -1,-0.2 -0.139 61.9-124.7 -94.4-168.5 43.9 13.1 29.8 23 23 A N - 0 0 24 4,-0.1 -5,-0.2 7,-0.1 6,-0.1 -0.879 12.4-165.4-143.1 107.7 42.7 14.2 26.4 24 24 A A S S+ 0 0 71 -7,-2.4 -6,-0.1 -2,-0.3 -1,-0.1 0.678 88.3 35.5 -69.7 -15.6 42.0 11.3 24.0 25 25 A I S S+ 0 0 97 -8,-0.3 -1,-0.2 1,-0.3 3,-0.0 0.851 128.0 25.3-104.0 -49.7 41.9 13.6 20.9 26 26 A M S > S- 0 0 73 3,-0.1 3,-2.4 1,-0.1 -1,-0.3 -0.873 70.7-160.9-122.4 91.5 44.5 16.4 21.4 27 27 A P T 3 S+ 0 0 103 0, 0.0 3,-0.3 0, 0.0 -4,-0.1 0.632 85.6 59.7 -46.7 -23.2 47.1 14.9 23.8 28 28 A D T 3 S+ 0 0 101 1,-0.2 2,-0.8 -6,-0.1 -6,-0.0 0.666 89.9 69.2 -85.4 -18.6 48.4 18.3 24.7 29 29 A K S < S+ 0 0 74 -3,-2.4 -1,-0.2 -6,-0.1 -3,-0.1 -0.393 72.7 150.3 -99.6 60.4 45.2 19.7 26.1 30 30 A T - 0 0 22 -2,-0.8 -8,-0.2 -3,-0.3 -7,-0.1 -0.125 58.2-115.3 -83.3-178.4 44.9 17.6 29.2 31 31 A L + 0 0 19 -10,-3.1 2,-0.2 -13,-0.1 -9,-0.1 0.090 69.2 130.6-104.6 19.8 43.4 18.3 32.6 32 32 A K >> - 0 0 64 -11,-0.3 4,-2.8 1,-0.1 3,-0.8 -0.541 68.6-113.6 -77.0 140.3 46.7 18.2 34.4 33 33 A K H 3> S+ 0 0 79 48,-0.6 4,-2.6 1,-0.2 5,-0.2 0.819 112.5 45.7 -36.2 -57.4 47.6 21.1 36.8 34 34 A D H 3> S+ 0 0 96 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.846 115.3 46.7 -65.0 -33.8 50.6 22.5 34.9 35 35 A V H <> S+ 0 0 40 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.909 111.1 51.7 -75.6 -39.9 48.8 22.4 31.5 36 36 A L H <>S+ 0 0 12 -4,-2.8 5,-2.9 2,-0.2 6,-0.3 0.937 113.3 45.4 -61.4 -44.1 45.7 23.9 33.0 37 37 A E H ><5S+ 0 0 105 -4,-2.6 3,-1.8 -5,-0.3 -2,-0.2 0.939 110.8 53.3 -65.1 -44.7 47.8 26.8 34.4 38 38 A A H 3<5S+ 0 0 79 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.837 113.2 43.8 -57.0 -33.5 49.7 27.2 31.1 39 39 A N T 3<5S- 0 0 71 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.217 111.6-117.1 -97.1 13.1 46.4 27.5 29.3 40 40 A S T < 5S+ 0 0 88 -3,-1.8 -3,-0.2 1,-0.1 3,-0.2 0.858 81.1 122.8 53.5 40.1 44.8 29.9 31.8 41 41 A M < + 0 0 38 -5,-2.9 -4,-0.2 -6,-0.2 -1,-0.1 -0.064 36.1 98.9-118.6 29.5 42.1 27.3 32.5 42 42 A N + 0 0 77 -6,-0.3 2,-0.3 -5,-0.2 -1,-0.1 -0.003 64.1 81.2-109.0 30.5 42.7 27.0 36.2 43 43 A T S > S- 0 0 72 -3,-0.2 4,-1.7 -7,-0.1 5,-0.2 -0.904 82.4-117.6-127.6 159.0 39.9 29.2 37.4 44 44 A I H > S+ 0 0 70 -2,-0.3 4,-2.6 1,-0.2 5,-0.2 0.904 110.2 49.7 -64.3 -41.1 36.2 28.3 37.9 45 45 A D H > S+ 0 0 129 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.916 108.6 51.1 -66.0 -43.9 34.9 30.8 35.4 46 46 A A H > S+ 0 0 28 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.912 115.4 42.6 -62.1 -43.0 37.2 29.9 32.6 47 47 A I H X S+ 0 0 14 -4,-1.7 4,-2.4 2,-0.2 5,-0.2 0.929 111.9 52.4 -70.5 -43.6 36.3 26.2 32.9 48 48 A T H X S+ 0 0 13 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.914 110.8 50.1 -61.9 -36.1 32.6 26.6 33.4 49 49 A Y H X S+ 0 0 141 -4,-2.4 4,-3.3 -5,-0.2 5,-0.3 0.923 109.5 49.2 -66.7 -43.9 32.6 28.8 30.2 50 50 A Q H X S+ 0 0 48 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.884 113.7 47.2 -61.5 -38.8 34.4 26.2 28.1 51 51 A V H < S+ 0 0 20 -4,-2.4 10,-2.6 2,-0.2 11,-0.3 0.928 115.5 45.3 -68.1 -44.5 32.1 23.5 29.3 52 52 A Q H < S+ 0 0 77 -4,-2.5 10,-1.9 -5,-0.2 11,-0.3 0.912 126.6 29.4 -64.6 -43.8 29.0 25.6 28.6 53 53 A N H < S- 0 0 94 -4,-3.3 7,-0.2 7,-0.2 -2,-0.2 0.613 95.2-145.9 -94.1 -16.4 30.2 26.8 25.2 54 54 A G < - 0 0 10 -4,-2.5 2,-0.2 5,-0.3 6,-0.2 -0.036 7.6-129.7 71.2 176.0 32.4 23.9 24.0 55 55 A K B > -A 58 0A 122 3,-2.1 3,-2.5 1,-0.1 2,-0.1 -0.743 51.8 -50.0-168.9 116.4 35.5 24.5 21.8 56 56 A N T 3 S+ 0 0 143 1,-0.3 -1,-0.1 -2,-0.2 0, 0.0 -0.330 130.7 1.6 54.1-119.6 36.4 22.8 18.5 57 57 A A T 3 S+ 0 0 60 -2,-0.1 -1,-0.3 -3,-0.1 -3,-0.0 0.564 116.0 92.3 -76.0 -7.3 36.1 19.0 19.0 58 58 A M B < S-A 55 0A 46 -3,-2.5 -3,-2.1 1,-0.0 0, 0.0 -0.772 81.0-125.6 -88.0 126.6 34.9 19.4 22.5 59 59 A P - 0 0 63 0, 0.0 2,-0.3 0, 0.0 -5,-0.3 -0.245 16.5-115.1 -68.3 157.4 31.0 19.6 22.7 60 60 A A - 0 0 52 -7,-0.2 4,-0.2 -6,-0.2 -8,-0.2 -0.733 25.6-172.5 -87.8 139.1 29.1 22.5 24.3 61 61 A F > + 0 0 14 -10,-2.6 4,-3.4 -2,-0.3 -9,-0.2 0.389 56.0 102.7-115.6 1.9 27.1 21.3 27.3 62 62 A G T 4 S+ 0 0 28 -10,-1.9 -9,-0.1 -11,-0.3 -10,-0.1 0.926 85.8 46.8 -51.9 -46.7 25.1 24.5 28.1 63 63 A G T 4 S+ 0 0 82 -11,-0.3 -1,-0.2 1,-0.2 -2,-0.1 0.973 122.4 32.4 -61.5 -49.8 22.0 23.0 26.5 64 64 A R T 4 S+ 0 0 156 -4,-0.2 2,-0.4 2,-0.1 -2,-0.2 0.866 107.7 63.9 -81.6 -37.5 22.2 19.6 28.2 65 65 A L S < S- 0 0 23 -4,-3.4 2,-0.1 -13,-0.1 -4,-0.0 -0.748 80.5-124.5 -94.4 135.9 23.8 20.2 31.6 66 66 A V >> - 0 0 88 -2,-0.4 4,-1.5 1,-0.1 3,-1.4 -0.495 33.8-104.9 -72.9 145.4 22.0 22.2 34.2 67 67 A D H 3> S+ 0 0 102 1,-0.3 4,-1.6 2,-0.2 -1,-0.1 0.698 118.0 56.1 -40.4 -35.4 24.0 25.1 35.5 68 68 A E H 3> S+ 0 0 107 2,-0.2 4,-2.7 1,-0.2 -1,-0.3 0.885 105.9 50.3 -69.9 -40.5 24.7 23.4 38.8 69 69 A D H <> S+ 0 0 37 -3,-1.4 4,-2.4 2,-0.2 -2,-0.2 0.895 107.4 53.3 -66.4 -39.4 26.2 20.3 37.2 70 70 A I H X S+ 0 0 0 -4,-1.5 4,-2.2 2,-0.2 -1,-0.2 0.915 112.8 45.7 -60.8 -42.2 28.5 22.4 35.0 71 71 A E H X S+ 0 0 95 -4,-1.6 4,-2.3 2,-0.2 -2,-0.2 0.937 112.4 48.1 -65.6 -50.6 29.8 24.1 38.2 72 72 A D H X S+ 0 0 11 -4,-2.7 4,-2.4 1,-0.2 -66,-0.2 0.880 112.7 50.5 -58.6 -40.3 30.2 21.0 40.3 73 73 A A H X S+ 0 0 6 -4,-2.4 4,-2.7 2,-0.2 -1,-0.2 0.929 108.3 52.4 -65.3 -42.2 32.1 19.4 37.3 74 74 A A H X S+ 0 0 0 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.918 112.3 45.4 -58.8 -44.2 34.4 22.4 37.0 75 75 A N H X S+ 0 0 49 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.893 109.3 54.9 -68.2 -37.9 35.2 22.1 40.7 76 76 A Y H X S+ 0 0 27 -4,-2.4 4,-2.8 1,-0.2 5,-0.3 0.940 108.7 49.0 -57.9 -48.1 35.7 18.4 40.4 77 77 A V H X S+ 0 0 15 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.886 111.8 49.3 -59.0 -40.7 38.3 18.9 37.6 78 78 A L H X S+ 0 0 28 -4,-1.9 4,-1.9 -5,-0.2 -1,-0.2 0.927 113.0 45.0 -68.4 -43.6 40.1 21.5 39.7 79 79 A S H X S+ 0 0 14 -4,-2.7 4,-1.3 2,-0.2 -2,-0.2 0.922 115.2 47.4 -67.1 -43.2 40.3 19.4 42.8 80 80 A Q H X>S+ 0 0 35 -4,-2.8 5,-1.7 -5,-0.2 4,-0.6 0.891 109.1 55.4 -62.2 -40.9 41.4 16.3 40.9 81 81 A S H ><5S+ 0 0 11 -4,-2.1 3,-0.8 -5,-0.3 -48,-0.6 0.911 109.4 46.3 -58.9 -42.4 43.9 18.4 39.0 82 82 A E H 3<5S+ 0 0 151 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.731 111.9 50.6 -74.8 -20.4 45.5 19.5 42.3 83 83 A K H 3<5S- 0 0 155 -4,-1.3 -1,-0.2 -3,-0.3 -2,-0.2 0.427 118.5-112.1 -93.6 -0.7 45.5 16.0 43.7 84 84 A G T <<5 0 0 31 -3,-0.8 -3,-0.2 -4,-0.6 -4,-0.1 0.439 360.0 360.0 87.5 0.5 47.2 14.8 40.6 85 85 A W < 0 0 82 -5,-1.7 -1,-0.2 -6,-0.2 -4,-0.1 0.046 360.0 360.0 63.9 360.0 44.4 12.6 39.1