==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 30-NOV-00 1GH8 . COMPND 2 MOLECULE: TRANSLATION ELONGATION FACTOR 1BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER . AUTHOR G.KOZLOV,I.EKIEL,K.GEHRING,NORTHEAST STRUCTURAL GENOMICS . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6122.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 76.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 28.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 196 0, 0.0 88,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 104.7 11.0 16.5 7.7 2 2 A G + 0 0 55 86,-0.6 2,-0.3 1,-0.2 87,-0.2 0.289 360.0 108.5 173.5 -8.6 7.5 17.9 6.9 3 3 A D - 0 0 51 85,-0.0 85,-1.2 84,-0.0 2,-0.7 -0.667 63.2-129.3 -90.0 145.7 5.9 15.5 4.5 4 4 A V E -AB 57 87A 46 53,-2.3 53,-2.1 -2,-0.3 2,-0.5 -0.843 27.4-173.5 -97.2 112.6 3.0 13.2 5.4 5 5 A V E -AB 56 86A 5 81,-2.4 81,-2.1 -2,-0.7 51,-0.2 -0.924 3.2-166.9-111.9 122.9 3.7 9.6 4.4 6 6 A A E -AB 55 85A 34 49,-1.4 49,-1.6 -2,-0.5 2,-0.4 -0.534 9.5-143.2 -97.4 167.5 1.1 6.8 4.8 7 7 A T E -AB 54 84A 4 77,-2.1 77,-1.0 47,-0.2 2,-0.5 -0.970 13.5-174.7-141.9 127.6 1.7 3.1 4.5 8 8 A I E -A 53 0A 18 45,-1.3 45,-3.0 -2,-0.4 2,-0.9 -0.955 8.3-163.6-122.1 108.4 -0.5 0.3 3.0 9 9 A K E -AB 52 81A 38 72,-0.9 72,-3.0 -2,-0.5 2,-0.3 -0.768 11.3-171.3 -98.3 96.7 0.8 -3.3 3.5 10 10 A V E +AB 51 80A 0 41,-2.1 41,-2.5 -2,-0.9 70,-0.2 -0.663 7.1 175.2 -91.4 135.5 -1.1 -5.5 1.0 11 11 A M E - B 0 79A 31 68,-1.1 68,-0.8 -2,-0.3 2,-0.3 -0.967 28.2-125.8-145.1 125.4 -0.7 -9.3 1.3 12 12 A P E - B 0 78A 4 0, 0.0 66,-0.3 0, 0.0 5,-0.2 -0.505 11.9-143.1 -71.5 128.4 -2.4 -12.2 -0.7 13 13 A E S S+ 0 0 146 64,-2.0 65,-0.1 -2,-0.3 4,-0.1 0.830 83.0 75.8 -58.1 -35.5 -4.2 -14.8 1.4 14 14 A S S S- 0 0 63 2,-0.1 3,-0.2 1,-0.1 63,-0.0 -0.438 92.2-118.7 -78.7 154.9 -3.1 -17.5 -1.0 15 15 A P S S+ 0 0 114 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.506 103.1 85.7 -70.0 -3.2 0.5 -18.8 -1.2 16 16 A D + 0 0 128 2,-0.1 2,-2.3 32,-0.1 -2,-0.1 -0.249 59.9 167.6 -90.9 44.9 0.5 -17.5 -4.8 17 17 A V - 0 0 26 -2,-0.5 2,-1.3 -3,-0.2 32,-0.2 -0.371 18.4-165.0 -63.8 78.4 1.6 -14.1 -3.5 18 18 A D > - 0 0 77 -2,-2.3 4,-2.4 1,-0.2 5,-0.1 -0.565 9.2-178.2 -69.9 95.1 2.5 -12.6 -6.9 19 19 A L H > S+ 0 0 72 -2,-1.3 4,-1.3 2,-0.2 -1,-0.2 0.924 81.8 45.3 -63.0 -43.8 4.4 -9.6 -5.7 20 20 A E H > S+ 0 0 135 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.864 114.1 48.7 -70.6 -35.6 5.1 -8.3 -9.2 21 21 A A H > S+ 0 0 27 1,-0.2 4,-1.4 2,-0.2 3,-0.4 0.883 110.2 52.0 -68.6 -37.2 1.4 -8.9 -10.2 22 22 A L H X S+ 0 0 2 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.785 97.9 69.3 -66.0 -28.7 0.4 -7.1 -7.1 23 23 A K H X S+ 0 0 87 -4,-1.3 4,-1.5 1,-0.2 -1,-0.2 0.911 100.7 44.8 -55.9 -46.9 2.7 -4.3 -8.2 24 24 A K H X S+ 0 0 149 -4,-1.0 4,-1.2 -3,-0.4 -1,-0.2 0.903 114.5 48.3 -65.1 -42.9 0.3 -3.4 -11.1 25 25 A E H X S+ 0 0 68 -4,-1.4 4,-1.4 1,-0.2 -2,-0.2 0.814 105.3 60.9 -66.4 -31.5 -2.7 -3.7 -8.8 26 26 A I H X S+ 0 0 0 -4,-2.6 4,-0.9 1,-0.2 -1,-0.2 0.895 101.5 51.6 -61.9 -42.9 -0.9 -1.5 -6.3 27 27 A Q H < S+ 0 0 129 -4,-1.5 3,-0.3 1,-0.2 -1,-0.2 0.867 112.5 45.5 -62.3 -39.3 -0.7 1.4 -8.7 28 28 A E H < S+ 0 0 147 -4,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.698 112.0 52.3 -77.4 -21.0 -4.4 1.1 -9.4 29 29 A R H < S+ 0 0 6 -4,-1.4 -1,-0.2 -5,-0.1 -2,-0.2 0.566 83.3 115.6 -90.1 -11.9 -5.2 0.9 -5.7 30 30 A I S < S- 0 0 19 -4,-0.9 2,-0.1 -3,-0.3 6,-0.1 -0.338 85.1 -90.3 -60.3 137.9 -3.2 4.0 -4.9 31 31 A P > - 0 0 8 0, 0.0 3,-1.2 0, 0.0 -1,-0.1 -0.273 29.8-140.8 -52.3 114.8 -5.3 6.9 -3.5 32 32 A E T 3 S+ 0 0 182 1,-0.2 32,-0.2 -2,-0.1 31,-0.1 0.439 92.9 76.9 -59.5 3.0 -6.4 9.0 -6.5 33 33 A G T 3 S- 0 0 26 30,-0.1 -1,-0.2 29,-0.1 31,-0.2 0.903 111.1 -15.9 -82.5 -43.9 -5.7 12.0 -4.4 34 34 A T S < S- 0 0 29 -3,-1.2 2,-0.3 29,-0.1 23,-0.1 -0.164 83.4 -76.3-130.6-135.5 -1.9 12.1 -4.5 35 35 A E E -C 56 0A 125 21,-0.7 21,-0.5 1,-0.1 -1,-0.1 -0.855 39.1 -96.7-135.0 169.5 0.9 9.8 -5.5 36 36 A L E -C 55 0A 62 -2,-0.3 20,-0.8 19,-0.2 19,-0.3 -0.032 23.4-163.2 -76.1-176.1 2.8 6.8 -4.1 37 37 A H - 0 0 89 17,-2.3 2,-0.3 18,-0.2 18,-0.2 0.470 54.6 -37.2-130.8 -77.5 6.1 6.8 -2.3 38 38 A K - 0 0 129 16,-0.2 16,-1.7 14,-0.1 2,-0.2 -0.908 50.9-136.0-165.1 129.9 8.0 3.5 -2.0 39 39 A I - 0 0 42 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.543 12.3-141.7 -92.7 158.2 6.9 -0.1 -1.5 40 40 A D - 0 0 55 -2,-0.2 12,-1.7 2,-0.1 2,-1.4 -0.970 7.9-145.4-123.7 131.5 8.4 -2.7 0.8 41 41 A E E +D 51 0A 142 -2,-0.4 10,-0.2 10,-0.2 9,-0.0 -0.586 44.3 155.5 -91.1 71.4 8.9 -6.4 0.1 42 42 A E E -D 50 0A 76 -2,-1.4 8,-1.9 8,-1.4 2,-0.1 -0.782 37.2-124.2-103.7 146.8 8.2 -7.6 3.7 43 43 A P E +D 49 0A 87 0, 0.0 6,-0.3 0, 0.0 3,-0.1 -0.479 28.3 168.6 -88.9 157.5 6.9 -11.1 4.7 44 44 A I + 0 0 78 4,-2.0 5,-0.2 -2,-0.1 -33,-0.0 0.512 58.5 26.5-127.1 -83.7 3.9 -12.0 6.7 45 45 A A S S- 0 0 52 3,-0.9 -32,-0.0 1,-0.1 0, 0.0 0.379 110.6 -63.3 -67.3-150.9 2.6 -15.6 7.0 46 46 A F S S- 0 0 228 1,-0.1 -1,-0.1 -3,-0.1 3,-0.0 0.803 129.3 -10.9 -71.9 -28.5 4.8 -18.6 6.6 47 47 A G S S+ 0 0 57 1,-0.0 2,-0.9 -4,-0.0 -1,-0.1 0.294 104.4 112.7-152.6 5.9 5.6 -17.7 3.0 48 48 A L - 0 0 21 -35,-0.1 -4,-2.0 -32,-0.1 -3,-0.9 -0.786 48.3-162.8 -93.0 106.3 3.2 -14.9 2.1 49 49 A V E - D 0 43A 48 -2,-0.9 2,-0.1 -6,-0.3 -3,-0.0 -0.775 4.5-154.5 -93.7 127.5 5.2 -11.6 1.6 50 50 A A E - D 0 42A 0 -8,-1.9 -8,-1.4 -2,-0.5 2,-0.5 -0.438 10.9-128.1 -94.6 166.6 3.3 -8.4 1.6 51 51 A L E -AD 10 41A 3 -41,-2.5 -41,-2.1 -10,-0.2 2,-1.3 -0.965 9.7-149.4-120.4 118.3 4.1 -5.0 -0.0 52 52 A N E -A 9 0A 8 -12,-1.7 2,-1.0 -2,-0.5 -43,-0.3 -0.696 16.9-168.2 -89.6 92.1 4.1 -1.9 2.1 53 53 A V E -A 8 0A 0 -45,-3.0 -45,-1.3 -2,-1.3 -14,-0.2 -0.696 6.6-168.4 -86.8 101.9 3.2 0.8 -0.4 54 54 A M E -A 7 0A 21 -16,-1.7 -17,-2.3 -2,-1.0 2,-0.4 -0.345 6.1-146.6 -84.6 165.2 3.8 4.2 1.2 55 55 A V E -AC 6 36A 7 -49,-1.6 -49,-1.4 -19,-0.3 2,-0.7 -0.999 6.3-139.4-139.4 135.1 2.5 7.5 -0.2 56 56 A V E +AC 5 35A 45 -20,-0.8 -21,-0.7 -21,-0.5 2,-0.3 -0.843 31.6 167.0 -96.5 116.9 4.0 11.0 -0.2 57 57 A V E +A 4 0A 31 -53,-2.1 -53,-2.3 -2,-0.7 -23,-0.0 -0.956 20.2 115.3-130.2 148.3 1.4 13.8 0.4 58 58 A G S S+ 0 0 61 -2,-0.3 -1,-0.1 -55,-0.2 -53,-0.0 0.043 81.9 34.8-167.2 -69.6 1.8 17.4 1.3 59 59 A D S S+ 0 0 172 2,-0.0 -2,-0.1 0, 0.0 -25,-0.0 0.514 105.4 89.3 -81.4 -5.7 0.5 20.0 -1.2 60 60 A A S S- 0 0 36 1,-0.1 2,-0.2 2,-0.0 -26,-0.1 0.405 72.7-127.1 -67.7-149.2 -2.2 17.6 -2.2 61 61 A E > - 0 0 160 -28,-0.2 3,-0.7 0, 0.0 -1,-0.1 -0.744 38.9 -69.3-147.6-165.5 -5.6 17.5 -0.5 62 62 A G G > S+ 0 0 62 1,-0.2 3,-1.4 -2,-0.2 -29,-0.1 0.250 96.4 107.1 -81.2 15.1 -8.1 15.1 1.2 63 63 A G G > + 0 0 26 1,-0.3 3,-1.3 -30,-0.2 -1,-0.2 0.525 53.7 85.7 -70.5 -3.9 -8.7 13.5 -2.2 64 64 A T G X + 0 0 47 -3,-0.7 3,-2.4 1,-0.3 4,-0.4 0.520 59.5 95.7 -74.3 -3.7 -6.7 10.6 -0.9 65 65 A E G <> + 0 0 122 -3,-1.4 4,-1.7 1,-0.3 3,-0.4 0.761 63.9 80.2 -55.1 -23.9 -10.0 9.4 0.5 66 66 A A H <> S+ 0 0 18 -3,-1.3 4,-2.8 1,-0.2 -1,-0.3 0.775 81.1 65.9 -56.5 -25.8 -10.1 7.4 -2.7 67 67 A A H <> S+ 0 0 14 -3,-2.4 4,-1.3 2,-0.2 -1,-0.2 0.975 103.0 42.4 -61.4 -55.9 -7.8 4.9 -1.1 68 68 A E H > S+ 0 0 146 -4,-0.4 4,-0.9 -3,-0.4 -1,-0.2 0.837 113.2 56.6 -58.6 -34.6 -10.3 3.8 1.6 69 69 A E H >< S+ 0 0 126 -4,-1.7 3,-1.2 1,-0.2 4,-0.3 0.951 107.1 45.6 -61.3 -51.8 -12.9 3.8 -1.2 70 70 A S H >< S+ 0 0 39 -4,-2.8 3,-1.0 1,-0.3 -1,-0.2 0.720 105.3 65.3 -63.8 -20.1 -11.0 1.4 -3.3 71 71 A L H >< S+ 0 0 43 -4,-1.3 3,-0.7 1,-0.2 -1,-0.3 0.790 86.0 69.1 -72.9 -28.2 -10.5 -0.6 -0.1 72 72 A S T << S+ 0 0 119 -3,-1.2 -1,-0.2 -4,-0.9 -2,-0.2 0.642 124.3 12.7 -64.5 -13.3 -14.3 -1.2 0.0 73 73 A G T < S+ 0 0 71 -3,-1.0 -1,-0.3 -4,-0.3 3,-0.2 0.073 101.5 125.2-151.3 26.1 -13.7 -3.5 -3.0 74 74 A I S < S- 0 0 27 -3,-0.7 2,-0.8 1,-0.2 -3,-0.1 0.179 79.1 -25.3 -73.4-163.4 -9.9 -3.9 -3.1 75 75 A E - 0 0 29 1,-0.2 -1,-0.2 3,-0.2 -64,-0.1 -0.274 60.0-171.7 -51.3 94.2 -7.9 -7.1 -3.2 76 76 A G S S+ 0 0 80 -2,-0.8 -1,-0.2 -3,-0.2 3,-0.2 0.785 88.5 39.5 -62.1 -26.9 -10.5 -9.3 -1.5 77 77 A V S S+ 0 0 76 1,-0.2 -64,-2.0 -3,-0.0 2,-1.1 0.839 112.9 57.9 -88.6 -38.3 -7.9 -12.1 -1.3 78 78 A S E S-B 12 0A 5 -66,-0.3 2,-0.3 -65,-0.1 -1,-0.2 -0.752 77.6-164.8 -96.7 89.9 -5.0 -9.8 -0.5 79 79 A N E -B 11 0A 116 -2,-1.1 -68,-1.1 -68,-0.8 2,-0.3 -0.583 12.1-140.3 -77.2 136.9 -6.0 -8.0 2.7 80 80 A I E -B 10 0A 10 -2,-0.3 2,-1.9 -70,-0.2 -70,-0.3 -0.738 16.1-127.7-101.9 147.9 -3.9 -5.0 3.5 81 81 A E E > +B 9 0A 107 -72,-3.0 2,-1.9 -2,-0.3 -72,-0.9 -0.606 38.9 174.7 -86.1 70.7 -2.6 -3.8 6.8 82 82 A V E 3 + 0 0 45 -2,-1.9 -74,-0.1 1,-0.2 -1,-0.1 -0.317 55.6 82.9 -80.5 51.6 -4.1 -0.4 6.1 83 83 A T E 3 + 0 0 125 -2,-1.9 2,-0.3 -76,-0.2 -1,-0.2 0.237 59.7 113.4-132.8 3.8 -3.2 1.0 9.5 84 84 A D E < +B 7 0A 54 -77,-1.0 -77,-2.1 -3,-0.9 2,-0.3 -0.647 38.5 171.0 -85.5 143.3 0.4 2.0 8.9 85 85 A V E -B 6 0A 95 -2,-0.3 -79,-0.2 -79,-0.3 2,-0.2 -0.976 25.0-165.0-148.3 158.1 1.4 5.7 9.0 86 86 A R E -B 5 0A 151 -81,-2.1 -81,-2.4 -2,-0.3 2,-1.5 -0.659 7.3-167.9-148.8 84.9 4.5 7.9 8.9 87 87 A R E -B 4 0A 177 -83,-0.2 2,-1.7 -2,-0.2 -83,-0.2 -0.594 6.5-169.4 -78.4 89.0 3.9 11.5 9.9 88 88 A L 0 0 63 -2,-1.5 -86,-0.6 -85,-1.2 -1,-0.1 -0.588 360.0 360.0 -81.5 82.3 7.2 13.1 8.9 89 89 A M 0 0 172 -2,-1.7 -1,-0.2 -87,-0.2 -85,-0.1 0.818 360.0 360.0 -91.7 360.0 6.7 16.5 10.6