==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 19-DEC-00 1GHH . COMPND 2 MOLECULE: DNA-DAMAGE-INDUCIBLE PROTEIN I; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR B.E.RAMIREZ,O.N.VOLOSHIN,R.D.CAMERINI-OTERO,A.BAX . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6186.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 9.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 41 0, 0.0 38,-1.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 141.8 -12.9 2.6 -0.9 2 2 A R E -aB 39 53A 176 51,-2.3 51,-2.3 36,-0.2 2,-0.5 -0.970 360.0-165.3-121.8 131.0 -10.7 1.7 2.2 3 3 A I E -aB 40 52A 6 36,-2.7 38,-1.5 -2,-0.4 2,-0.4 -0.967 4.6-173.7-119.7 125.2 -7.3 -0.1 1.9 4 4 A E E -aB 41 51A 97 47,-2.5 47,-2.5 -2,-0.5 2,-0.4 -0.972 2.1-169.2-123.9 129.3 -5.6 -1.7 4.8 5 5 A V E -aB 42 50A 14 36,-2.9 38,-1.5 -2,-0.4 2,-0.4 -0.960 1.5-166.5-119.9 131.6 -2.0 -3.2 4.8 6 6 A T E -aB 43 49A 26 43,-2.7 43,-1.4 -2,-0.4 2,-0.4 -0.957 2.3-163.0-120.0 134.1 -0.5 -5.3 7.6 7 7 A I E -a 44 0A 22 36,-2.1 38,-2.0 -2,-0.4 2,-0.1 -0.949 28.3-110.4-117.2 132.8 3.2 -6.1 7.8 8 8 A A E > -a 45 0A 13 -2,-0.4 3,-2.3 36,-0.2 38,-0.2 -0.403 17.8-136.9 -65.1 131.1 4.5 -8.9 10.0 9 9 A K T 3 S+ 0 0 155 36,-1.5 -1,-0.2 1,-0.3 37,-0.1 0.743 100.1 77.1 -59.3 -24.5 6.5 -7.6 13.0 10 10 A T T 3 S+ 0 0 126 1,-0.3 -1,-0.3 36,-0.2 -2,-0.1 0.639 93.7 57.2 -62.3 -11.1 9.1 -10.3 12.3 11 11 A S S < S- 0 0 66 -3,-2.3 -1,-0.3 2,-0.0 2,-0.2 -0.720 80.4-168.2-122.8 80.2 10.1 -7.9 9.5 12 12 A P - 0 0 103 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.496 5.1-154.8 -72.6 133.5 11.0 -4.5 11.1 13 13 A L - 0 0 49 -2,-0.2 5,-0.1 1,-0.1 3,-0.1 -0.782 37.1 -80.2-105.5 148.3 11.4 -1.5 8.7 14 14 A P >> - 0 0 90 0, 0.0 2,-4.6 0, 0.0 3,-2.5 -0.044 56.3 -88.9 -48.2 150.3 13.6 1.5 9.7 15 15 A A T 34 S+ 0 0 120 1,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.118 126.0 31.8 -56.9 48.8 12.0 4.1 12.0 16 16 A G T 3> S+ 0 0 38 -2,-4.6 4,-1.7 -3,-0.1 -1,-0.3 0.285 92.5 88.0-176.0 -18.4 10.6 6.0 9.0 17 17 A A H <> S+ 0 0 14 -3,-2.5 4,-3.2 2,-0.2 5,-0.2 0.859 84.4 55.9 -68.2 -39.2 9.9 3.5 6.3 18 18 A I H X S+ 0 0 22 -4,-0.6 4,-2.7 1,-0.2 5,-0.2 0.962 111.1 44.8 -60.0 -49.6 6.3 2.6 7.4 19 19 A D H > S+ 0 0 129 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.890 114.6 50.0 -60.5 -39.0 5.3 6.2 7.2 20 20 A A H X S+ 0 0 31 -4,-1.7 4,-2.5 2,-0.2 -1,-0.2 0.912 110.3 50.0 -66.1 -40.9 7.1 6.5 3.9 21 21 A L H X S+ 0 0 16 -4,-3.2 4,-2.8 2,-0.2 5,-0.2 0.933 109.9 49.5 -61.4 -48.7 5.4 3.4 2.5 22 22 A A H X S+ 0 0 23 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.891 112.3 49.3 -60.1 -40.0 1.9 4.6 3.5 23 23 A G H X S+ 0 0 27 -4,-2.0 4,-1.9 -5,-0.2 -1,-0.2 0.918 112.5 46.1 -67.1 -43.9 2.6 8.0 1.8 24 24 A E H X S+ 0 0 11 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.917 113.2 50.0 -66.3 -41.3 3.9 6.4 -1.4 25 25 A L H X S+ 0 0 12 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.912 108.2 52.8 -63.0 -42.7 1.0 4.0 -1.6 26 26 A S H X S+ 0 0 45 -4,-2.2 4,-2.6 -5,-0.2 5,-0.2 0.924 107.9 50.0 -60.0 -45.7 -1.6 6.7 -1.0 27 27 A R H X S+ 0 0 149 -4,-1.9 4,-1.9 1,-0.2 -1,-0.2 0.912 111.3 49.9 -60.1 -41.1 -0.2 8.8 -3.9 28 28 A R H X S+ 0 0 94 -4,-1.9 4,-1.9 1,-0.2 -1,-0.2 0.888 110.8 50.0 -63.5 -40.0 -0.3 5.8 -6.2 29 29 A I H X S+ 0 0 8 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.924 108.6 50.7 -65.7 -45.9 -3.9 5.1 -5.2 30 30 A Q H < S+ 0 0 143 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.896 110.8 49.3 -60.8 -40.5 -5.1 8.6 -5.8 31 31 A Y H < S+ 0 0 199 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.906 115.6 43.4 -66.2 -40.1 -3.6 8.6 -9.3 32 32 A A H < S+ 0 0 28 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.853 122.9 38.1 -71.7 -36.8 -5.2 5.2 -10.1 33 33 A F < + 0 0 21 -4,-3.0 3,-0.3 -5,-0.2 -1,-0.3 -0.789 62.1 161.5-119.3 86.5 -8.6 6.2 -8.6 34 34 A P S S+ 0 0 119 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.781 79.3 45.2 -72.5 -31.1 -9.4 9.8 -9.3 35 35 A D S S+ 0 0 145 1,-0.1 2,-0.4 2,-0.0 -5,-0.1 0.507 106.6 63.8 -92.7 -8.7 -13.1 9.5 -8.6 36 36 A N S S- 0 0 71 -3,-0.3 2,-0.3 -6,-0.1 -3,-0.1 -0.972 82.1-119.8-124.3 130.1 -13.0 7.4 -5.3 37 37 A E - 0 0 133 -2,-0.4 2,-0.5 1,-0.0 -2,-0.0 -0.440 30.9-159.9 -63.2 123.5 -11.5 8.5 -2.0 38 38 A G - 0 0 24 -2,-0.3 2,-0.5 -5,-0.2 -36,-0.2 -0.922 8.3-170.8-109.6 124.4 -8.7 6.0 -1.1 39 39 A H E -a 2 0A 101 -38,-1.0 -36,-2.7 -2,-0.5 2,-0.5 -0.956 6.0-166.1-115.9 124.2 -7.5 5.7 2.5 40 40 A V E -a 3 0A 26 -2,-0.5 2,-0.4 -38,-0.1 -36,-0.2 -0.937 6.5-178.3-114.9 130.0 -4.3 3.7 3.2 41 41 A S E -a 4 0A 55 -38,-1.5 -36,-2.9 -2,-0.5 2,-0.4 -0.967 6.3-166.3-125.7 141.0 -3.2 2.4 6.6 42 42 A V E +a 5 0A 25 -2,-0.4 2,-0.3 -38,-0.2 -36,-0.2 -0.992 19.4 153.4-129.5 128.2 -0.1 0.5 7.5 43 43 A R E -a 6 0A 160 -38,-1.5 -36,-2.1 -2,-0.4 2,-0.3 -0.982 44.3 -99.0-149.5 159.6 0.5 -1.3 10.8 44 44 A Y E +a 7 0A 101 -2,-0.3 2,-0.3 -38,-0.2 -36,-0.2 -0.633 45.5 168.2 -83.1 137.2 2.4 -4.2 12.4 45 45 A A E -a 8 0A 31 -38,-2.0 -36,-1.5 -2,-0.3 3,-0.0 -0.890 52.1 -98.9-140.5 168.2 0.4 -7.4 12.9 46 46 A A S S+ 0 0 109 -2,-0.3 2,-0.3 -38,-0.2 -36,-0.2 0.801 108.7 24.8 -60.7 -27.7 1.2 -11.0 13.7 47 47 A A S S- 0 0 46 -40,-0.1 2,-0.3 -39,-0.1 -1,-0.1 -0.989 86.5-103.8-140.2 152.3 0.9 -11.8 10.0 48 48 A N + 0 0 111 -2,-0.3 2,-0.3 -41,-0.1 -41,-0.2 -0.554 53.4 158.8 -71.5 126.8 1.3 -10.0 6.6 49 49 A N E -B 6 0A 96 -43,-1.4 -43,-2.7 -2,-0.3 2,-0.5 -0.996 32.6-152.4-151.3 149.9 -2.2 -9.4 5.2 50 50 A L E -B 5 0A 58 -2,-0.3 2,-0.4 -45,-0.2 -45,-0.2 -0.989 16.8-175.9-125.1 122.1 -3.9 -7.1 2.6 51 51 A S E -B 4 0A 54 -47,-2.5 -47,-2.5 -2,-0.5 2,-0.5 -0.977 4.3-173.1-123.0 129.8 -7.6 -6.2 3.1 52 52 A V E -B 3 0A 29 -2,-0.4 2,-0.4 -49,-0.2 3,-0.2 -0.980 3.4-171.7-123.0 125.8 -9.6 -4.2 0.6 53 53 A I E +B 2 0A 109 -51,-2.3 -51,-2.3 -2,-0.5 3,-0.1 -0.966 68.5 18.2-120.3 130.0 -13.2 -3.1 1.4 54 54 A G S S+ 0 0 66 -2,-0.4 2,-0.3 1,-0.3 -1,-0.2 0.641 98.6 113.2 92.1 16.3 -15.6 -1.4 -1.1 55 55 A A - 0 0 37 -3,-0.2 -1,-0.3 -53,-0.1 2,-0.2 -0.843 62.0-119.2-122.9 162.0 -13.7 -2.5 -4.2 56 56 A T > - 0 0 81 -2,-0.3 4,-2.5 -3,-0.1 5,-0.2 -0.485 34.0-107.3 -91.8 159.3 -14.2 -4.8 -7.2 57 57 A K H > S+ 0 0 177 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.875 120.1 50.2 -57.6 -40.0 -12.0 -7.8 -8.1 58 58 A E H > S+ 0 0 134 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.902 110.3 50.0 -66.8 -38.8 -10.4 -6.0 -11.1 59 59 A D H > S+ 0 0 47 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.924 110.2 51.6 -62.9 -43.7 -9.6 -2.9 -8.9 60 60 A K H X S+ 0 0 100 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.895 108.2 50.0 -62.2 -41.0 -8.1 -5.2 -6.3 61 61 A Q H X S+ 0 0 103 -4,-2.2 4,-2.6 2,-0.2 -1,-0.2 0.936 111.3 49.7 -64.0 -43.3 -5.8 -6.9 -8.9 62 62 A R H X S+ 0 0 96 -4,-2.3 4,-3.0 2,-0.2 -2,-0.2 0.934 110.5 50.4 -60.0 -44.7 -4.7 -3.5 -10.1 63 63 A I H X S+ 0 0 9 -4,-2.8 4,-2.9 1,-0.2 5,-0.2 0.930 109.0 50.3 -60.4 -43.8 -4.0 -2.5 -6.6 64 64 A S H X S+ 0 0 37 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.927 111.5 50.0 -60.0 -41.0 -2.0 -5.6 -5.9 65 65 A E H X S+ 0 0 94 -4,-2.6 4,-3.0 2,-0.2 -2,-0.2 0.925 110.0 50.2 -62.1 -43.0 -0.1 -4.8 -9.2 66 66 A I H X S+ 0 0 8 -4,-3.0 4,-3.1 2,-0.2 5,-0.3 0.929 109.9 50.0 -60.0 -45.4 0.5 -1.3 -7.9 67 67 A L H X S+ 0 0 55 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.923 111.2 50.0 -60.0 -42.7 1.8 -2.6 -4.6 68 68 A Q H X S+ 0 0 107 -4,-2.5 4,-2.2 -5,-0.2 -2,-0.2 0.947 113.7 44.3 -60.0 -51.1 4.1 -4.9 -6.5 69 69 A E H X S+ 0 0 100 -4,-3.0 4,-1.1 2,-0.2 -2,-0.2 0.917 114.7 47.2 -63.1 -44.6 5.5 -2.1 -8.8 70 70 A T H >< S+ 0 0 2 -4,-3.1 3,-0.8 1,-0.2 7,-0.2 0.941 113.4 49.9 -60.0 -46.9 5.9 0.5 -6.0 71 71 A W H >< S+ 0 0 159 -4,-2.4 3,-1.0 -5,-0.3 -1,-0.2 0.867 110.3 50.0 -59.4 -40.2 7.6 -2.2 -3.9 72 72 A E H 3< S+ 0 0 152 -4,-2.2 -1,-0.3 1,-0.2 3,-0.2 0.662 110.3 50.7 -75.0 -16.6 9.9 -3.1 -6.8 73 73 A S T XX S+ 0 0 33 -4,-1.1 3,-1.7 -3,-0.8 4,-1.4 0.038 72.2 124.4-107.2 23.4 10.9 0.6 -7.4 74 74 A A H <> + 0 0 31 -3,-1.0 4,-1.9 1,-0.3 -1,-0.2 0.785 63.2 62.9 -53.5 -35.2 11.8 1.2 -3.7 75 75 A D H 34 S+ 0 0 125 -3,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.710 108.4 43.3 -66.7 -20.0 15.3 2.5 -4.5 76 76 A D H <4 S+ 0 0 135 -3,-1.7 -2,-0.2 3,-0.0 -1,-0.2 0.874 122.8 29.6 -93.0 -46.6 13.9 5.5 -6.4 77 77 A W H < S+ 0 0 45 -4,-1.4 2,-0.5 -7,-0.2 -2,-0.2 0.720 102.4 85.7 -90.3 -20.1 11.0 6.8 -4.3 78 78 A F < - 0 0 68 -4,-1.9 2,-0.4 -5,-0.3 -61,-0.1 -0.695 56.5-174.3 -87.8 129.9 12.2 5.8 -0.9 79 79 A V - 0 0 122 -2,-0.5 2,-0.4 -62,-0.0 -59,-0.1 -0.954 6.8-157.4-120.9 139.0 14.6 8.3 0.8 80 80 A S 0 0 90 -2,-0.4 -64,-0.0 -63,-0.0 -2,-0.0 -0.947 360.0 360.0-121.5 140.1 16.4 7.7 4.2 81 81 A E 0 0 256 -2,-0.4 -65,-0.0 0, 0.0 -2,-0.0 -0.487 360.0 360.0 -66.4 360.0 17.7 10.3 6.6