==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 25-JUN-98 2GIW . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; . AUTHOR L.BANCI,I.BERTINI,J.G.HUBER,G.A.SPYROULIAS,P.TURANO . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6948.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 53 0, 0.0 92,-0.1 0, 0.0 89,-0.1 0.000 360.0 360.0 360.0-146.6 -11.1 10.2 4.5 2 2 A D - 0 0 83 1,-0.1 95,-0.4 87,-0.0 94,-0.3 -0.232 360.0-143.8 -69.0 171.9 -8.8 13.0 5.7 3 3 A V S > S+ 0 0 63 93,-0.2 4,-2.1 3,-0.1 -1,-0.1 0.702 97.6 47.3-101.9 -38.1 -5.3 13.1 4.0 4 4 A E H > S+ 0 0 154 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.947 113.2 46.2 -72.7 -51.8 -3.4 14.1 7.1 5 5 A K H > S+ 0 0 123 2,-0.2 4,-3.3 1,-0.2 5,-0.4 0.926 109.6 58.2 -58.7 -39.2 -4.9 11.5 9.4 6 6 A G H > S+ 0 0 0 1,-0.2 4,-2.9 87,-0.2 -2,-0.2 0.946 110.8 41.5 -51.0 -53.1 -4.3 9.1 6.6 7 7 A K H X S+ 0 0 39 -4,-2.1 4,-2.7 1,-0.2 -1,-0.2 0.886 118.1 46.3 -60.3 -43.9 -0.5 10.0 6.7 8 8 A K H X S+ 0 0 119 -4,-2.8 4,-1.9 2,-0.2 -2,-0.2 0.932 117.2 41.8 -66.3 -49.2 -0.4 10.0 10.5 9 9 A I H X S+ 0 0 32 -4,-3.3 4,-1.0 2,-0.2 5,-0.2 0.914 113.4 55.2 -69.8 -45.8 -2.4 6.7 11.0 10 10 A F H >X>S+ 0 0 4 -4,-2.9 4,-3.2 -5,-0.4 3,-2.2 0.972 108.8 45.7 -45.9 -65.7 -0.4 5.2 8.1 11 11 A V H 3<5S+ 0 0 58 -4,-2.7 5,-0.3 1,-0.3 -1,-0.2 0.863 108.0 61.3 -53.3 -35.3 2.9 6.0 9.8 12 12 A Q H 3<5S+ 0 0 126 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.713 129.2 3.5 -63.3 -25.5 1.4 4.6 13.0 13 13 A K H <<5S+ 0 0 71 -3,-2.2 -2,-0.2 -4,-1.0 -1,-0.2 0.400 133.9 44.3-140.2 -0.2 0.8 1.1 11.6 14 14 A C T >X5S+ 0 0 17 -4,-3.2 3,-2.5 -5,-0.2 4,-2.3 0.739 94.6 70.1-114.8 -46.1 2.2 0.8 8.0 15 15 A A T 34 + 0 0 65 -2,-0.4 2,-2.4 6,-0.3 3,-0.5 -0.261 14.3 165.7 -78.7 60.5 8.8 3.9 5.6 20 20 A V T 3 + 0 0 20 -2,-2.5 -1,-0.1 1,-0.2 3,-0.1 -0.314 56.8 75.7 -76.7 57.8 7.7 6.1 2.6 21 21 A E T 3 S+ 0 0 115 -2,-2.4 2,-0.3 1,-0.3 -1,-0.2 0.014 104.4 10.8-151.7 30.6 9.0 9.4 4.1 22 22 A K S < S- 0 0 144 -3,-0.5 2,-2.5 2,-0.1 -1,-0.3 -0.926 110.3 -52.4 179.2-179.8 12.7 8.9 3.5 23 23 A G S S+ 0 0 80 -2,-0.3 2,-0.6 -3,-0.1 -3,-0.1 -0.454 72.2 162.4 -72.1 66.5 15.2 6.6 1.6 24 24 A G - 0 0 14 -2,-2.5 7,-0.3 -5,-0.4 -2,-0.1 -0.871 30.7-137.9 -92.4 114.8 13.6 3.5 3.2 25 25 A K - 0 0 164 -2,-0.6 2,-1.9 1,-0.1 -6,-0.3 -0.113 31.6 -87.9 -66.0 172.5 14.5 0.4 1.3 26 26 A H S S+ 0 0 77 1,-0.2 -1,-0.1 4,-0.1 -8,-0.1 -0.501 71.2 141.6 -89.0 68.5 12.0 -2.4 0.5 27 27 A K S S- 0 0 150 -2,-1.9 -1,-0.2 2,-0.5 -10,-0.1 0.977 83.9 -15.2 -77.3 -80.3 12.5 -4.5 3.7 28 28 A T S S+ 0 0 71 -11,-0.4 -10,-0.1 1,-0.3 -11,-0.1 0.253 144.1 20.1-106.6 8.2 9.1 -5.9 4.8 29 29 A G S S- 0 0 3 -12,-0.5 -2,-0.5 -4,-0.2 -1,-0.3 -0.884 86.7-109.9-174.4 135.7 7.1 -3.5 2.5 30 30 A P - 0 0 40 0, 0.0 2,-0.1 0, 0.0 -10,-0.1 -0.619 41.5-101.8 -75.9 139.0 8.1 -1.5 -0.6 31 31 A N - 0 0 44 -7,-0.3 2,-2.5 -2,-0.3 -5,-0.1 -0.444 35.8-121.9 -58.5 131.2 8.3 2.3 -0.2 32 32 A L + 0 0 19 -14,-0.1 2,-2.2 -2,-0.1 -1,-0.1 -0.248 46.1 168.7 -81.8 53.5 5.1 3.5 -1.9 33 33 A H S S- 0 0 128 -2,-2.5 2,-0.3 1,-0.1 -1,-0.1 -0.384 73.1 -23.4 -82.3 71.6 7.0 5.7 -4.4 34 34 A G S S+ 0 0 10 -2,-2.2 2,-2.0 64,-0.1 -1,-0.1 -0.693 74.1 168.2 132.0 -70.1 4.2 6.6 -6.8 35 35 A L > + 0 0 23 -2,-0.3 3,-1.6 2,-0.1 2,-0.2 -0.461 54.8 82.3 69.6 -80.7 1.6 3.9 -6.4 36 36 A F T 3 S+ 0 0 39 -2,-2.0 23,-0.2 62,-0.3 24,-0.2 -0.353 116.0 0.1 -59.7 117.7 -1.2 5.6 -8.4 37 37 A G T 3 S+ 0 0 55 21,-2.0 2,-1.2 -2,-0.2 -1,-0.3 0.093 103.1 119.6 90.7 -25.0 -0.5 4.9 -12.1 38 38 A R < - 0 0 147 -3,-1.6 -1,-0.2 21,-0.2 19,-0.1 -0.648 63.8-137.0 -86.4 96.4 2.6 2.9 -11.2 39 39 A K - 0 0 153 -2,-1.2 19,-0.2 19,-0.1 3,-0.2 -0.298 22.0-159.8 -51.8 121.2 2.0 -0.6 -12.5 40 40 A T + 0 0 19 17,-2.6 -1,-0.1 1,-0.1 13,-0.1 0.001 60.6 81.6 -83.3-160.2 3.2 -3.2 -9.9 41 41 A G S S+ 0 0 9 15,-0.1 -1,-0.1 14,-0.1 6,-0.1 0.535 92.3 63.4 79.0 8.6 4.0 -6.9 -10.5 42 42 A Q + 0 0 157 -3,-0.2 4,-0.1 4,-0.1 5,-0.1 -0.462 59.3 170.5-166.8 78.9 7.6 -6.0 -11.7 43 43 A A - 0 0 25 2,-0.2 4,-0.2 1,-0.1 -3,-0.0 -0.617 42.1-120.7 -87.5 157.1 10.1 -4.3 -9.3 44 44 A P S S- 0 0 141 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.662 98.6 -10.2 -70.4 -18.0 13.8 -3.8 -10.3 45 45 A G S S+ 0 0 56 1,-0.2 2,-1.5 -19,-0.0 -2,-0.2 0.196 133.1 40.5-139.7 -92.5 14.8 -5.9 -7.2 46 46 A F + 0 0 60 1,-0.2 -1,-0.2 -4,-0.1 3,-0.1 -0.580 59.2 169.0 -72.0 92.8 12.4 -6.9 -4.5 47 47 A T - 0 0 40 -2,-1.5 6,-0.2 1,-0.3 -1,-0.2 -0.100 41.2-128.8 -98.6 35.8 9.4 -7.8 -6.6 48 48 A Y - 0 0 58 4,-0.1 -1,-0.3 5,-0.1 2,-0.1 -0.043 49.9 -27.3 63.9-162.6 7.6 -9.4 -3.7 49 49 A T > - 0 0 32 -3,-0.1 4,-2.9 1,-0.1 3,-0.3 -0.424 65.4-104.2 -71.8 164.0 6.1 -12.9 -3.7 50 50 A D H > S+ 0 0 124 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.868 119.3 64.8 -47.2 -45.2 4.8 -14.6 -6.9 51 51 A A H 4 S+ 0 0 17 26,-0.4 -1,-0.2 1,-0.2 4,-0.2 0.899 113.8 28.7 -58.0 -45.6 1.3 -13.8 -5.7 52 52 A N H >> S+ 0 0 11 -3,-0.3 3,-1.8 25,-0.2 4,-0.7 0.886 119.1 57.0 -78.6 -40.7 1.8 -10.1 -5.9 53 53 A K H 3< S+ 0 0 112 -4,-2.9 -2,-0.2 1,-0.3 -3,-0.2 0.859 104.4 55.2 -56.4 -36.7 4.3 -10.3 -8.8 54 54 A N T 3< S+ 0 0 138 -4,-3.1 -1,-0.3 -5,-0.2 -2,-0.2 0.602 95.8 70.7 -71.7 -17.9 1.7 -12.2 -10.7 55 55 A K T <4 - 0 0 87 -3,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.988 65.2-172.8 -71.7 -64.2 -0.9 -9.4 -10.4 56 56 A G < + 0 0 49 -4,-0.7 2,-0.3 1,-0.2 -15,-0.1 0.999 22.7 158.2 62.4 75.7 0.3 -6.5 -12.6 57 57 A I - 0 0 29 -19,-0.1 -17,-2.6 3,-0.0 -1,-0.2 -0.934 51.5-123.8-130.1 155.1 -2.2 -3.7 -11.7 58 58 A T - 0 0 69 -2,-0.3 -21,-2.0 -19,-0.2 -20,-0.2 0.189 43.9-123.5 -83.7 11.6 -2.0 0.1 -12.0 59 59 A W + 0 0 25 -23,-0.2 -21,-0.2 -22,-0.2 2,-0.1 0.882 48.5 173.6 41.0 57.6 -2.7 0.5 -8.3 60 60 A K > - 0 0 85 -24,-0.2 4,-2.0 -23,-0.1 2,-1.8 -0.336 51.3 -86.0 -81.8 173.3 -5.7 2.7 -8.9 61 61 A E T 4 S+ 0 0 103 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 -0.127 125.7 50.9 -75.5 43.8 -8.2 4.1 -6.3 62 62 A E T > S+ 0 0 112 -2,-1.8 4,-2.5 3,-0.0 -1,-0.2 0.376 107.9 43.7-137.7 -60.3 -10.2 0.8 -6.6 63 63 A T H > S+ 0 0 20 1,-0.3 4,-2.7 2,-0.2 5,-0.2 0.833 111.8 56.3 -68.2 -34.8 -7.7 -2.0 -6.2 64 64 A L H X S+ 0 0 2 -4,-2.0 4,-2.8 2,-0.2 5,-0.3 0.913 108.1 47.9 -60.0 -44.0 -6.0 -0.2 -3.3 65 65 A M H > S+ 0 0 36 -5,-0.3 4,-2.5 2,-0.2 5,-0.3 0.974 113.4 47.5 -60.0 -53.0 -9.4 -0.1 -1.5 66 66 A E H X S+ 0 0 126 -4,-2.5 4,-2.6 2,-0.2 8,-0.3 0.912 117.5 42.9 -50.3 -52.9 -10.0 -3.8 -2.2 67 67 A Y H < S+ 0 0 21 -4,-2.7 -2,-0.2 2,-0.2 -1,-0.2 0.971 114.6 46.2 -62.2 -61.5 -6.4 -4.7 -1.0 68 68 A L H < S+ 0 0 20 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.835 117.4 45.7 -56.7 -36.2 -6.2 -2.5 2.1 69 69 A E H < S+ 0 0 92 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.969 139.1 3.5 -67.4 -52.1 -9.7 -3.7 3.2 70 70 A N S >X S+ 0 0 66 -4,-2.6 4,-2.6 -5,-0.3 3,-1.6 -0.547 71.5 163.4-137.9 66.9 -9.1 -7.4 2.5 71 71 A P H 3> S+ 0 0 2 0, 0.0 4,-2.6 0, 0.0 6,-0.1 0.889 77.2 54.6 -66.9 -42.4 -5.5 -8.0 1.4 72 72 A K H 34 S+ 0 0 169 1,-0.2 5,-0.1 2,-0.2 -5,-0.1 0.685 115.0 43.4 -59.4 -23.3 -5.4 -11.7 2.0 73 73 A K H <4 S+ 0 0 159 -3,-1.6 -1,-0.2 -6,-0.2 -6,-0.1 0.889 111.0 51.0 -87.6 -51.9 -8.5 -11.9 -0.3 74 74 A Y H < S+ 0 0 36 -4,-2.6 -2,-0.2 -8,-0.3 -7,-0.1 0.874 128.8 22.4 -50.8 -44.0 -7.3 -9.5 -3.0 75 75 A I S >< S- 0 0 1 -4,-2.6 2,-2.3 -5,-0.2 3,-0.9 -0.945 82.5-141.4-128.8 108.4 -4.0 -11.5 -3.3 76 76 A P T 3 S+ 0 0 115 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.412 89.2 10.3 -76.5 74.8 -4.2 -15.1 -2.0 77 77 A G T 3 S+ 0 0 43 -2,-2.3 -26,-0.4 -6,-0.1 -25,-0.2 0.683 79.7 157.5 126.0 52.2 -0.7 -15.3 -0.3 78 78 A T < - 0 0 27 -3,-0.9 -28,-0.0 2,-0.2 -30,-0.0 -0.433 49.8-123.6 -82.7 168.0 1.0 -11.9 0.0 79 79 A K S S+ 0 0 114 -2,-0.1 2,-0.2 -30,-0.0 -1,-0.1 0.438 81.8 109.9 -85.0 -6.6 3.7 -11.1 2.5 80 80 A M - 0 0 45 -9,-0.1 2,-0.5 2,-0.1 -2,-0.2 -0.547 55.9-159.7 -73.3 140.6 1.5 -8.2 3.7 81 81 A I + 0 0 153 -2,-0.2 2,-0.1 -10,-0.0 -2,-0.0 -0.888 45.1 117.1-127.8 89.8 -0.0 -8.8 7.2 82 82 A F + 0 0 47 -2,-0.5 -10,-0.2 1,-0.1 -2,-0.1 -0.484 29.7 177.6-162.0 75.1 -3.1 -6.6 7.6 83 83 A A S S- 0 0 94 -13,-0.1 2,-0.3 -12,-0.1 -11,-0.1 0.802 72.9 -0.5 -60.6 -37.3 -6.3 -8.5 8.2 84 84 A G - 0 0 47 1,-0.1 -15,-0.1 -14,-0.1 -14,-0.1 -0.925 56.9-145.1-150.7 167.4 -8.6 -5.4 8.7 85 85 A I - 0 0 22 -2,-0.3 -1,-0.1 -16,-0.1 -16,-0.1 0.854 59.6 -77.7-110.5 -54.0 -8.1 -1.7 8.7 86 86 A K S S- 0 0 138 -17,-0.1 -17,-0.0 3,-0.0 3,-0.0 -0.065 75.6 -60.7-170.9 -64.0 -10.5 -0.2 11.3 87 87 A K S S- 0 0 181 -3,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.168 91.8 -53.6-167.9 -57.7 -14.1 0.1 10.1 88 88 A K S > S+ 0 0 126 -3,-0.0 4,-1.0 -19,-0.0 5,-0.2 0.109 121.6 69.0-171.2 -50.3 -14.4 2.3 7.0 89 89 A T H >> S+ 0 0 68 1,-0.2 4,-2.1 2,-0.2 3,-1.5 0.928 101.8 50.5 -52.8 -50.6 -12.9 5.8 7.7 90 90 A E H 3> S+ 0 0 3 1,-0.3 4,-2.5 2,-0.2 5,-0.4 0.868 104.6 58.0 -60.1 -36.9 -9.3 4.3 7.8 91 91 A R H 34 S+ 0 0 67 1,-0.2 4,-0.4 -3,-0.2 -1,-0.3 0.748 116.3 36.1 -59.9 -27.3 -10.0 2.5 4.5 92 92 A E H << S+ 0 0 74 -3,-1.5 -2,-0.2 -4,-1.0 -1,-0.2 0.648 116.6 52.7 -99.4 -28.5 -10.7 6.0 3.0 93 93 A D H >X S+ 0 0 4 -4,-2.1 4,-2.7 -5,-0.2 3,-1.2 0.946 110.4 45.2 -74.0 -53.6 -8.1 7.9 5.0 94 94 A L H 3X S+ 0 0 4 -4,-2.5 4,-2.6 1,-0.3 5,-0.2 0.931 114.0 50.4 -55.6 -46.3 -5.1 5.7 4.1 95 95 A I H 34 S+ 0 0 7 -5,-0.4 4,-0.3 -4,-0.4 -1,-0.3 0.606 110.1 51.4 -74.3 -8.1 -6.1 5.7 0.5 96 96 A A H <4 S+ 0 0 24 -3,-1.2 3,-0.5 -94,-0.3 4,-0.4 0.881 108.2 50.8 -91.6 -45.8 -6.4 9.5 0.6 97 97 A Y H >X S+ 0 0 1 -4,-2.7 3,-2.6 -95,-0.4 4,-2.1 0.944 109.5 50.1 -48.3 -56.1 -2.9 9.9 2.1 98 98 A L H 3X S+ 0 0 9 -4,-2.6 4,-2.0 1,-0.3 -62,-0.3 0.807 98.2 68.1 -61.9 -22.2 -1.4 7.7 -0.6 99 99 A K H 34 S+ 0 0 98 -3,-0.5 -1,-0.3 -4,-0.3 -2,-0.2 0.605 113.4 31.3 -69.5 -11.8 -3.3 9.9 -3.2 100 100 A K H X> S+ 0 0 84 -3,-2.6 4,-2.6 -4,-0.4 3,-1.9 0.529 107.0 70.3-115.9 -23.3 -0.8 12.6 -2.1 101 101 A A H 3< S+ 0 0 7 -4,-2.1 -2,-0.2 1,-0.3 -3,-0.2 0.853 93.1 61.3 -60.3 -34.4 2.1 10.2 -1.3 102 102 A T T 3< S+ 0 0 55 -4,-2.0 -1,-0.3 -5,-0.2 -3,-0.1 0.622 116.1 32.0 -57.1 -19.7 2.2 9.8 -5.1 103 103 A N T <4 0 0 139 -3,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.674 360.0 360.0-117.5 -35.1 3.0 13.6 -5.2 104 104 A E < 0 0 110 -4,-2.6 -3,-0.2 0, 0.0 -2,-0.1 0.648 360.0 360.0 -74.5 360.0 5.0 14.5 -2.1