==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 08-AUG-12 4GIF . COMPND 2 MOLECULE: POLYCYSTIC KIDNEY DISEASE 2-LIKE 1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.YU,M.H.ULBRICH,M.-H.LI,S.DOBBINS,W.K.ZHANG,L.TONG,E.Y.ISAC . 45 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4724.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 80.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 75.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 699 A G 0 0 139 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 70.4 15.7 21.4 -9.0 2 700 A G - 0 0 74 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.217 360.0 -55.3 88.8-179.9 18.9 20.2 -10.8 3 701 A W - 0 0 253 -2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.478 42.5-131.6 -94.3 169.9 21.4 17.4 -10.6 4 702 A V - 0 0 108 -2,-0.2 2,-0.2 4,-0.0 -2,-0.0 -0.980 18.6-138.8-124.5 133.8 23.4 16.4 -7.5 5 703 A S > - 0 0 55 -2,-0.4 4,-1.7 1,-0.1 5,-0.1 -0.549 17.8-124.1 -91.9 162.3 27.2 15.8 -7.7 6 704 A G H > S+ 0 0 56 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.745 109.6 64.3 -72.8 -22.5 29.1 13.0 -6.0 7 705 A E H > S+ 0 0 134 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.941 108.3 37.3 -65.8 -48.2 31.2 15.7 -4.4 8 706 A E H > S+ 0 0 94 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.839 117.1 52.2 -74.8 -30.3 28.4 17.2 -2.4 9 707 A F H X S+ 0 0 131 -4,-1.7 4,-3.8 2,-0.2 -2,-0.2 0.973 110.6 47.7 -66.9 -51.7 26.8 13.9 -1.8 10 708 A Y H X S+ 0 0 126 -4,-3.1 4,-1.6 1,-0.2 -2,-0.2 0.931 112.5 51.4 -50.9 -47.5 30.2 12.6 -0.4 11 709 A M H X S+ 0 0 106 -4,-2.1 4,-1.4 2,-0.2 3,-0.5 0.933 112.6 43.3 -54.8 -51.3 30.4 15.8 1.7 12 710 A L H X S+ 0 0 87 -4,-2.7 4,-2.0 1,-0.2 3,-0.4 0.924 108.3 61.6 -63.6 -41.5 26.9 15.3 3.1 13 711 A T H X S+ 0 0 65 -4,-3.8 4,-1.1 1,-0.2 -1,-0.2 0.825 103.1 49.4 -53.6 -35.8 27.7 11.6 3.6 14 712 A R H X S+ 0 0 135 -4,-1.6 4,-2.6 -3,-0.5 -1,-0.2 0.832 104.5 57.4 -74.5 -32.7 30.6 12.6 6.0 15 713 A R H X S+ 0 0 167 -4,-1.4 4,-1.9 -3,-0.4 -2,-0.2 0.933 106.6 50.1 -63.0 -40.9 28.4 14.8 8.0 16 714 A V H X S+ 0 0 68 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.867 108.2 54.6 -64.3 -33.0 26.2 11.9 8.6 17 715 A L H X S+ 0 0 77 -4,-1.1 4,-2.7 -5,-0.2 -2,-0.2 0.957 107.4 47.8 -64.6 -50.0 29.3 9.9 9.6 18 716 A Q H X S+ 0 0 116 -4,-2.6 4,-3.1 1,-0.2 -1,-0.2 0.853 110.2 54.0 -58.3 -37.3 30.3 12.4 12.2 19 717 A L H X S+ 0 0 117 -4,-1.9 4,-3.0 2,-0.2 -1,-0.2 0.899 109.8 46.5 -64.2 -42.7 26.7 12.5 13.6 20 718 A E H X S+ 0 0 120 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.931 114.3 48.3 -65.9 -44.2 26.7 8.7 14.0 21 719 A T H X S+ 0 0 81 -4,-2.7 4,-1.5 1,-0.2 -2,-0.2 0.922 117.3 41.3 -62.7 -44.6 30.1 8.8 15.6 22 720 A V H X S+ 0 0 78 -4,-3.1 4,-1.4 1,-0.2 -2,-0.2 0.877 114.9 50.5 -71.9 -36.8 29.1 11.6 18.0 23 721 A L H X S+ 0 0 108 -4,-3.0 4,-2.3 2,-0.2 -1,-0.2 0.808 107.7 53.7 -71.5 -29.5 25.6 10.2 18.7 24 722 A E H X S+ 0 0 138 -4,-2.0 4,-2.0 -5,-0.2 -1,-0.2 0.916 107.6 50.3 -69.3 -42.8 27.0 6.8 19.6 25 723 A G H X S+ 0 0 38 -4,-1.5 4,-1.6 -5,-0.2 -2,-0.2 0.849 112.2 48.7 -62.6 -33.6 29.4 8.3 22.1 26 724 A V H X S+ 0 0 59 -4,-1.4 4,-2.2 2,-0.2 3,-0.2 0.962 107.5 52.1 -70.3 -53.9 26.5 10.2 23.7 27 725 A V H X S+ 0 0 71 -4,-2.3 4,-2.1 1,-0.2 -2,-0.2 0.879 108.5 55.3 -49.2 -41.9 24.2 7.2 23.9 28 726 A S H X S+ 0 0 69 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.932 105.5 47.9 -61.6 -48.5 27.0 5.4 25.7 29 727 A Q H X S+ 0 0 135 -4,-1.6 4,-0.9 1,-0.2 5,-0.2 0.878 111.1 54.5 -61.4 -34.0 27.6 8.0 28.4 30 728 A I H X S+ 0 0 102 -4,-2.2 4,-3.0 1,-0.2 3,-0.5 0.918 108.5 46.4 -68.4 -37.3 23.9 7.9 29.0 31 729 A D H X S+ 0 0 109 -4,-2.1 4,-0.7 1,-0.2 -2,-0.2 0.896 111.0 53.3 -69.7 -35.4 23.8 4.2 29.4 32 730 A A H < S+ 0 0 55 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.662 116.7 39.1 -71.5 -15.1 26.8 4.4 31.8 33 731 A V H >X S+ 0 0 86 -4,-0.9 4,-1.9 -3,-0.5 3,-1.1 0.808 108.8 58.0 -99.5 -44.8 25.0 6.9 33.8 34 732 A G H 3< S+ 0 0 33 -4,-3.0 4,-0.3 1,-0.3 -2,-0.2 0.621 109.0 51.5 -63.0 -9.9 21.6 5.4 33.7 35 733 A S T 3X S+ 0 0 54 -4,-0.7 4,-1.3 2,-0.2 -1,-0.3 0.621 103.5 49.8-105.8 -14.6 23.2 2.4 35.2 36 734 A K H <> S+ 0 0 142 -3,-1.1 4,-3.1 2,-0.2 5,-0.2 0.715 107.6 59.0 -87.4 -25.6 25.0 3.7 38.2 37 735 A L H X S+ 0 0 109 -4,-1.9 4,-1.4 1,-0.2 -2,-0.2 0.913 107.7 46.9 -62.5 -37.5 21.7 5.3 38.8 38 736 A K H > S+ 0 0 107 -4,-0.3 4,-1.9 2,-0.2 -2,-0.2 0.838 109.3 50.4 -71.4 -37.0 20.6 1.7 38.8 39 737 A M H X S+ 0 0 100 -4,-1.3 4,-1.4 1,-0.2 -2,-0.2 0.925 110.5 51.9 -66.9 -40.0 23.4 0.5 41.1 40 738 A L H X>S+ 0 0 82 -4,-3.1 5,-2.2 1,-0.2 4,-0.7 0.830 109.1 50.3 -61.7 -34.8 22.4 3.3 43.5 41 739 A E H <5S+ 0 0 128 -4,-1.4 3,-0.4 1,-0.2 -1,-0.2 0.860 109.1 50.6 -72.5 -35.4 18.8 2.1 43.4 42 740 A R H <5S+ 0 0 161 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.753 110.0 52.7 -72.5 -23.6 19.9 -1.4 44.1 43 741 A K H <5S- 0 0 151 -4,-1.4 -1,-0.2 -5,-0.1 -2,-0.2 0.605 124.1 -97.4 -89.3 -12.2 21.9 -0.2 47.0 44 742 A G T <5 0 0 64 -4,-0.7 -3,-0.2 -3,-0.4 -4,-0.1 0.330 360.0 360.0 116.4 -9.2 19.1 1.8 48.7 45 743 A W < 0 0 236 -5,-2.2 -1,-0.1 -6,-0.2 -8,-0.0 0.377 360.0 360.0 -83.7 360.0 19.6 5.4 47.5