==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 25-JUN-01 1GJJ . COMPND 2 MOLECULE: LAP2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.M.CLORE,M.CAI . 93 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4350.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 119128.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 24 25.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 6 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 121 0, 0.0 3,-0.1 0, 0.0 22,-0.0 0.000 360.0 360.0 360.0 77.0 108.3 5.9 -19.8 2 2 A P - 0 0 91 0, 0.0 2,-0.1 0, 0.0 92,-0.1 -0.082 360.0 -83.3 -50.0 147.9 110.4 9.1 -19.5 3 3 A E - 0 0 190 1,-0.0 2,-0.2 3,-0.0 3,-0.0 -0.354 54.8-155.3 -57.8 124.8 113.8 8.8 -17.9 4 4 A F - 0 0 23 -3,-0.1 2,-0.1 87,-0.1 49,-0.1 -0.626 25.9 -86.3-101.9 162.5 113.2 8.9 -14.1 5 5 A L - 0 0 78 -2,-0.2 48,-0.2 1,-0.2 41,-0.1 -0.412 26.5-139.5 -67.1 139.9 115.7 10.0 -11.4 6 6 A E S S+ 0 0 162 1,-0.3 -1,-0.2 46,-0.1 -2,-0.0 0.577 101.4 39.0 -76.7 -5.8 117.8 7.1 -10.2 7 7 A D > + 0 0 80 1,-0.1 3,-1.0 46,-0.0 48,-0.9 -0.606 63.3 161.1-143.0 77.2 117.4 8.5 -6.6 8 8 A P B > +A 54 0A 0 0, 0.0 3,-2.9 0, 0.0 46,-1.6 0.587 58.7 90.0 -76.4 -9.1 113.8 9.8 -6.2 9 9 A S E 3 S+bC 54 55A 24 44,-4.7 45,-2.0 45,-0.7 44,-0.2 0.801 77.1 67.5 -59.1 -22.1 114.1 9.7 -2.4 10 10 A V E < S+ 0 0 21 44,-6.8 45,-2.6 -3,-1.0 44,-0.3 0.528 87.5 91.4 -75.5 -1.0 115.3 13.3 -2.7 11 11 A L E < S-b 56 0A 11 44,-3.3 45,-1.4 -3,-2.9 46,-1.3 -0.612 82.5-114.7 -92.3 154.5 111.7 14.1 -3.9 12 12 A T > - 0 0 15 45,-0.9 4,-2.5 43,-0.3 46,-1.6 -0.386 26.2-110.3 -82.5 165.6 109.0 15.2 -1.5 13 13 A K H > S+ 0 0 4 2,-0.2 4,-2.4 1,-0.2 45,-0.5 0.947 119.2 48.7 -62.7 -47.1 105.9 13.1 -0.7 14 14 A D H > S+ 0 0 60 47,-0.3 4,-1.9 1,-0.2 45,-1.4 0.927 111.7 50.5 -61.0 -40.7 103.6 15.5 -2.6 15 15 A K H > S+d 60 0B 39 42,-2.7 46,-6.7 44,-0.8 49,-2.8 0.951 110.8 48.2 -63.1 -45.7 105.9 15.6 -5.5 16 16 A L H X S+ 0 0 0 45,-4.8 49,-4.3 -4,-2.5 46,-2.5 0.888 106.9 57.7 -62.7 -36.5 106.0 11.8 -5.7 17 17 A K H X S+d 62 0B 20 -4,-2.4 4,-2.1 41,-0.9 49,-2.1 0.949 107.9 45.8 -61.4 -44.6 102.2 11.6 -5.5 18 18 A S H X S+ 0 0 28 44,-9.9 4,-3.7 -4,-1.9 49,-1.9 0.885 108.3 58.0 -66.3 -34.6 101.9 13.8 -8.6 19 19 A E H X S+dE 64 66B 12 44,-4.7 46,-3.5 -4,-2.0 4,-1.5 0.950 108.1 46.0 -60.5 -44.9 104.5 11.7 -10.3 20 20 A L H <>S+F 67 0C 0 -4,-2.2 46,-3.7 45,-1.8 50,-3.1 0.909 115.8 45.7 -65.7 -38.5 102.4 8.6 -9.8 21 21 A V H <5S+d 66 0B 35 -4,-2.1 3,-2.0 45,-1.6 46,-1.7 0.927 110.4 53.2 -71.3 -39.8 99.3 10.4 -11.0 22 22 A A H <5S+ 0 0 43 -4,-3.7 45,-1.9 44,-3.0 -1,-0.2 0.819 111.0 48.5 -63.2 -26.2 101.2 11.8 -13.9 23 23 A N T <5S- 0 0 17 44,-9.9 45,-2.7 -4,-1.5 44,-0.5 0.140 112.6-121.8 -98.7 20.3 102.1 8.2 -14.7 24 24 A N T 5 + 0 0 121 42,-3.0 45,-3.8 44,-2.6 2,-0.3 0.789 54.9 164.5 45.5 28.3 98.5 7.0 -14.3 25 25 A V < - 0 0 8 -5,-2.9 2,-0.5 40,-1.2 44,-0.3 -0.571 35.7-131.3 -75.0 132.4 99.8 4.7 -11.6 26 26 A T - 0 0 110 44,-0.5 44,-0.2 -2,-0.3 -1,-0.1 -0.736 13.5-150.0 -89.2 125.3 96.9 3.4 -9.5 27 27 A L - 0 0 10 -2,-0.5 4,-0.1 42,-0.1 10,-0.0 -0.825 20.7-124.5 -96.4 109.7 97.5 3.7 -5.7 28 28 A P - 0 0 53 0, 0.0 45,-0.4 0, 0.0 3,-0.3 -0.125 29.2-111.6 -49.3 142.1 95.7 0.9 -3.7 29 29 A A S S+ 0 0 95 1,-0.2 3,-0.1 43,-0.1 0, 0.0 -0.365 97.9 48.3 -74.1 158.2 93.3 2.2 -1.0 30 30 A G S S+ 0 0 82 1,-0.2 2,-0.3 -2,-0.0 -1,-0.2 0.831 88.4 105.6 81.8 30.8 94.3 1.6 2.6 31 31 A E + 0 0 55 -3,-0.3 42,-0.6 -4,-0.1 -1,-0.2 -0.871 26.1 150.8-146.8 110.7 97.8 2.8 2.1 32 32 A Q + 0 0 84 -2,-0.3 47,-2.7 43,-0.1 45,-1.4 -0.451 32.8 119.3-138.6 65.1 99.2 6.2 3.4 33 33 A R E > -gh 79 80D 80 46,-2.2 47,-9.9 45,-0.6 4,-1.8 -0.989 58.7-136.9-130.6 137.9 102.9 5.8 4.2 34 34 A K H > S+g 80 0D 56 46,-1.7 47,-3.6 45,-0.7 4,-2.7 0.959 106.9 52.2 -58.6 -50.1 105.8 7.8 2.6 35 35 A D H > S+g 81 0D 60 45,-1.9 4,-3.2 46,-0.8 50,-3.1 0.919 105.7 55.6 -55.0 -40.8 107.9 4.6 2.2 36 36 A V H > S+gI 82 84D 13 45,-4.3 47,-9.9 46,-1.3 4,-2.0 0.934 111.2 44.0 -59.2 -41.6 105.1 2.8 0.5 37 37 A Y H < S+ I 0 81D 0 -4,-1.8 47,-4.2 46,-1.8 4,-1.6 0.864 113.6 51.4 -72.2 -32.5 104.9 5.7 -2.1 38 38 A V H < S+g 84 0D 6 42,-2.9 4,-1.9 -4,-2.7 47,-1.3 0.944 113.4 43.0 -69.9 -44.9 108.7 5.7 -2.4 39 39 A Q H X S+g 85 0D 39 45,-9.9 4,-4.6 -4,-3.2 47,-4.1 0.874 108.6 58.6 -70.5 -32.3 109.0 1.9 -3.0 40 40 A L E < S+J 88 0D 2 -4,-2.0 47,-9.9 46,-1.9 4,-2.9 0.940 106.0 50.4 -61.9 -39.0 106.0 2.0 -5.4 41 41 A Y E 4>S+g 87 0D 0 42,-2.7 47,-2.9 46,-1.6 50,-2.1 0.949 117.7 38.6 -62.3 -45.2 108.0 4.5 -7.4 42 42 A L E 4>S+ 0 0 29 42,-2.3 5,-3.7 45,-2.2 46,-1.3 0.884 116.6 52.6 -71.8 -38.5 111.0 2.1 -7.4 43 43 A Q E <5S+J 87 0D 62 -4,-4.6 46,-2.1 42,-3.2 44,-0.3 0.898 120.4 31.0 -66.2 -41.3 108.7 -1.0 -7.8 44 44 A H B 5S+K 88 0D 31 45,-4.9 46,-4.2 42,-3.6 49,-3.0 0.902 136.3 18.6 -86.0 -46.2 106.9 0.4 -10.9 45 45 A L B >>5S+L 92 0E 0 45,-6.9 4,-3.6 42,-4.0 3,-2.3 0.924 128.2 37.9 -91.7 -71.1 109.6 2.5 -12.5 46 46 A T T 34 - 0 0 66 -46,-1.3 4,-3.5 -45,-0.4 -42,-2.7 -0.489 27.8-105.6 -80.2 151.7 109.3 16.8 -2.1 58 117 A N H > S+ 0 0 66 -46,-1.6 4,-1.3 -45,-0.5 -41,-0.9 0.876 125.2 49.6 -44.1 -38.4 106.1 15.3 -0.8 59 118 A E H > S+ 0 0 120 -45,-1.4 4,-1.7 -46,-0.3 -41,-0.9 0.966 113.8 42.3 -68.8 -51.0 104.3 17.5 -3.4 60 119 A D H > S+d 15 0B 59 -45,-0.5 4,-2.0 1,-0.2 -41,-0.9 0.908 108.0 60.8 -63.9 -40.1 106.6 16.5 -6.3 61 120 A L H < S+ 0 0 0 -46,-6.7 -45,-4.8 -4,-3.5 4,-1.9 0.902 106.2 47.3 -56.6 -37.5 106.5 12.8 -5.3 62 121 A L H X S+d 17 0B 15 -46,-2.5 -44,-9.9 -4,-1.3 4,-2.7 0.903 104.6 60.4 -71.4 -37.1 102.8 12.8 -5.8 63 122 A D H < S+ 0 0 57 -45,-1.7 -44,-4.7 -4,-1.7 -41,-1.5 0.925 108.0 45.1 -56.1 -41.5 103.1 14.6 -9.2 64 123 A Q E < S+d 19 0B 7 -49,-2.8 4,-1.2 -4,-2.0 -45,-0.9 0.926 110.6 52.8 -70.1 -42.3 105.2 11.6 -10.4 65 124 A L E 4>S+ 0 0 0 -49,-4.3 -45,-1.8 -46,-3.5 5,-1.7 0.937 108.5 50.8 -60.1 -43.3 102.8 9.0 -8.9 66 125 A V E ><5S+dE 21 19B 31 -46,-3.7 -42,-3.0 -4,-2.7 -44,-3.0 0.899 101.6 62.5 -62.1 -37.1 99.9 10.6 -10.7 67 126 A K B 3 5S+F 20 0C 86 -49,-1.9 -44,-9.9 -45,-1.9 -45,-0.4 0.869 98.0 56.1 -57.9 -33.8 101.8 10.5 -14.0 68 127 A Y T 3 5S- 0 0 12 -45,-2.7 -44,-2.6 -49,-1.3 -1,-0.3 0.467 124.7-106.0 -78.8 4.5 101.9 6.7 -13.8 69 128 A G T < 5S+ 0 0 20 -45,-3.8 -44,-1.2 -3,-2.3 2,-0.5 0.719 79.2 135.5 81.2 18.8 98.0 6.8 -13.7 70 129 A V < + 0 0 0 -50,-3.1 -44,-0.5 -5,-1.7 -45,-0.4 -0.866 26.5 173.5-103.7 130.5 98.1 6.0 -9.9 71 130 A N + 0 0 116 -2,-0.5 -45,-0.1 -47,-0.2 -53,-0.0 -0.648 17.3 151.0-137.0 80.3 95.8 8.0 -7.6 72 131 A P - 0 0 16 0, 0.0 -43,-0.1 0, 0.0 -40,-0.1 0.226 54.6 -53.0 -86.9-148.7 95.8 6.5 -4.0 73 132 A G - 0 0 16 -42,-0.6 2,-0.3 -45,-0.4 3,-0.1 -0.623 69.4 -82.9 -93.3 155.9 95.3 8.4 -0.7 74 133 A P - 0 0 83 0, 0.0 -1,-0.1 0, 0.0 6,-0.1 -0.376 58.6 -98.5 -58.8 112.6 97.3 11.5 0.2 75 134 A I - 0 0 22 -2,-0.3 -43,-0.1 -62,-0.2 -42,-0.1 0.005 43.5-168.8 -33.6 113.7 100.6 10.3 1.7 76 135 A V - 0 0 87 -3,-0.1 -43,-0.2 1,-0.0 -1,-0.1 0.960 45.3 -87.3 -76.0 -79.0 99.9 10.4 5.5 77 136 A G S S+ 0 0 54 -45,-1.4 -44,-0.2 -64,-0.0 -42,-0.1 0.294 117.3 43.2-174.6 -8.0 103.3 9.9 7.2 78 137 A T S S+ 0 0 70 -46,-1.4 -45,-0.6 -44,-0.1 4,-0.3 0.484 109.7 52.4-125.4 -13.6 103.8 6.2 7.6 79 138 A T E > S+g 33 0D 2 -47,-2.7 -46,-2.2 -46,-0.3 4,-1.8 0.561 84.7 88.2 -98.9 -11.0 102.6 4.9 4.2 80 139 A R H > S+gh 34 33D 14 -47,-9.9 -42,-2.9 -48,-0.6 4,-2.3 0.900 84.4 55.6 -55.3 -39.9 104.9 7.2 2.3 81 140 A K H > S+gI 35 37D 84 -47,-3.6 -45,-4.3 -46,-1.4 4,-2.3 0.900 103.9 54.6 -63.0 -36.6 107.7 4.6 2.4 82 141 A L H > S+g 36 0D 53 -47,-2.4 4,-2.8 -46,-0.6 -46,-1.3 0.949 109.8 45.9 -62.8 -45.4 105.4 2.0 0.8 83 142 A Y H X S+ 0 0 0 -47,-9.9 4,-2.8 -4,-1.8 -42,-2.7 0.898 109.8 55.0 -65.9 -36.6 104.7 4.4 -2.2 84 143 A E H < S+gI 38 36D 13 -47,-4.2 -45,-9.9 -4,-2.3 -42,-2.3 0.941 112.3 43.2 -63.3 -41.9 108.4 5.2 -2.5 85 144 A K H < S+g 39 0D 96 -50,-3.1 -42,-3.2 -4,-2.3 -45,-1.3 0.949 113.6 50.7 -68.1 -46.4 109.2 1.4 -2.8 86 145 A K H < S+ 0 0 14 -47,-4.1 -42,-3.6 -4,-2.8 4,-1.9 0.917 103.5 60.1 -58.5 -40.8 106.2 0.8 -5.1 87 146 A L E X S+gJ 41 43D 0 -47,-9.9 -42,-4.0 -4,-2.8 4,-3.0 0.916 98.7 57.7 -55.5 -39.8 107.4 3.7 -7.3 88 147 A L H > S+KJ 44 40D 34 -47,-2.9 -41,-6.2 -46,-1.3 -45,-2.8 0.910 103.2 54.4 -57.9 -37.9 110.7 1.8 -7.8 89 148 A K H > S+ 0 0 78 -46,-2.1 -45,-4.9 -50,-1.5 4,-1.2 0.953 110.0 45.0 -62.0 -46.7 108.6 -1.0 -9.2 90 149 A L H > S+ 0 0 10 -46,-4.2 -45,-6.9 -50,-1.9 4,-0.8 0.929 110.9 54.0 -63.5 -41.9 107.0 1.2 -11.8 91 150 A R H >< S+ 0 0 4 -4,-3.0 -45,-1.5 -50,-2.1 3,-1.2 0.887 100.4 62.0 -60.0 -35.6 110.3 2.8 -12.6 92 151 A E H 3< S+L 45 0E 76 -4,-2.1 -42,-1.0 -50,-0.7 -47,-0.3 0.899 92.2 64.5 -58.5 -37.8 111.6 -0.7 -13.3 93 152 A Q H 3< 0 0 97 -49,-3.0 -1,-0.3 -4,-1.2 -2,-0.2 0.854 360.0 360.0 -54.9 -31.9 109.0 -1.1 -16.1 94 153 A G << 0 0 33 -3,-1.2 -1,-0.3 -4,-0.8 -45,-0.2 -0.009 360.0 360.0 -63.5 360.0 111.0 1.7 -17.8