==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIMENTIN 08-AUG-01 1GK6 . COMPND 2 MOLECULE: VIMENTIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.V.STRELKOV,H.HERRMANN,N.GEISLER,R.ZIMBELMANN,U.AEBI, . 107 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8159.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 99 92.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 95 88.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 355 A M 0 0 125 0, 0.0 59,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -49.4 107.3 30.4 9.8 2 356 A K > + 0 0 113 3,-0.0 4,-2.5 2,-0.0 5,-0.1 0.163 360.0 68.0-139.4 -23.1 105.0 29.9 6.9 3 357 A Q H > S+ 0 0 134 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.910 97.7 51.9 -65.2 -42.2 102.8 28.0 9.3 4 358 A L H > S+ 0 0 38 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.861 109.5 49.8 -60.6 -37.6 102.2 31.3 11.1 5 359 A E H > S+ 0 0 104 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.922 110.4 49.7 -66.9 -43.6 101.2 32.9 7.7 6 360 A D H X S+ 0 0 72 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.892 112.4 47.7 -61.4 -40.5 98.9 30.0 7.1 7 361 A K H X S+ 0 0 71 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.901 110.4 51.0 -68.8 -42.4 97.3 30.4 10.5 8 362 A V H X S+ 0 0 21 -4,-2.5 4,-2.4 2,-0.2 5,-0.2 0.918 112.9 46.7 -57.9 -43.8 97.0 34.2 10.1 9 363 A E H X S+ 0 0 130 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.939 112.3 50.7 -63.6 -46.8 95.2 33.6 6.7 10 364 A E H X S+ 0 0 71 -4,-2.6 4,-2.8 1,-0.2 -1,-0.2 0.876 113.5 44.2 -58.4 -46.9 93.0 30.9 8.2 11 365 A L H X S+ 0 0 5 -4,-2.6 4,-2.9 2,-0.2 5,-0.2 0.884 111.1 50.8 -70.6 -41.3 91.9 33.1 11.1 12 366 A L H X S+ 0 0 96 -4,-2.4 4,-1.9 -5,-0.2 -1,-0.2 0.906 115.0 47.4 -62.2 -38.2 91.3 36.3 9.1 13 367 A S H X S+ 0 0 60 -4,-2.2 4,-2.0 -5,-0.2 -2,-0.2 0.943 112.9 45.5 -67.7 -49.9 89.2 34.1 6.8 14 368 A K H X S+ 0 0 105 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.905 114.4 50.5 -57.8 -45.5 87.2 32.3 9.6 15 369 A N H X S+ 0 0 8 -4,-2.9 4,-2.7 2,-0.2 -1,-0.2 0.866 106.4 54.3 -60.5 -42.6 86.6 35.7 11.3 16 370 A Y H X S+ 0 0 133 -4,-1.9 4,-2.2 -5,-0.2 -1,-0.2 0.948 111.6 45.2 -55.4 -48.2 85.4 37.3 8.0 17 371 A H H X S+ 0 0 120 -4,-2.0 4,-1.7 1,-0.2 -2,-0.2 0.875 111.5 51.9 -68.7 -37.0 82.8 34.6 7.7 18 372 A L H X S+ 0 0 24 -4,-2.3 4,-3.1 1,-0.2 -1,-0.2 0.911 108.6 51.6 -62.9 -42.1 81.8 34.8 11.3 19 373 A E H X S+ 0 0 106 -4,-2.7 4,-2.6 2,-0.2 -2,-0.2 0.902 107.4 52.5 -57.1 -42.8 81.3 38.6 10.9 20 374 A N H X S+ 0 0 67 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.883 111.5 47.3 -59.6 -40.2 79.1 38.0 7.9 21 375 A E H X S+ 0 0 74 -4,-1.7 4,-2.8 2,-0.2 5,-0.2 0.923 108.9 53.5 -67.6 -45.7 77.0 35.6 10.1 22 376 A V H X S+ 0 0 12 -4,-3.1 4,-2.6 1,-0.2 -2,-0.2 0.935 109.5 49.1 -53.9 -46.1 76.8 38.1 12.9 23 377 A A H X S+ 0 0 61 -4,-2.6 4,-1.9 1,-0.2 -1,-0.2 0.907 110.8 50.1 -62.0 -42.6 75.5 40.7 10.4 24 378 A R H X S+ 0 0 171 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.940 112.2 47.4 -58.9 -47.4 72.8 38.2 9.1 25 379 A L H X S+ 0 0 17 -4,-2.8 4,-2.8 1,-0.2 -2,-0.2 0.903 109.1 53.2 -62.7 -43.4 71.7 37.4 12.6 26 380 A K H X S+ 0 0 113 -4,-2.6 4,-2.3 -5,-0.2 -1,-0.2 0.892 109.2 49.8 -63.7 -32.5 71.5 41.0 13.7 27 381 A K H X S+ 0 0 122 -4,-1.9 4,-2.8 2,-0.2 -2,-0.2 0.935 110.9 48.9 -69.7 -44.1 69.3 41.7 10.6 28 382 A L H X S+ 0 0 65 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.916 111.2 50.7 -58.1 -42.5 67.0 38.8 11.5 29 383 A V H X S+ 0 0 13 -4,-2.8 4,-2.8 2,-0.2 -2,-0.2 0.934 110.1 49.1 -60.7 -46.0 66.8 40.1 15.1 30 384 A G H X S+ 0 0 28 -4,-2.3 4,-1.8 1,-0.2 -1,-0.2 0.918 111.4 50.3 -60.6 -42.2 65.9 43.5 13.9 31 385 A D H X S+ 0 0 69 -4,-2.8 4,-1.9 1,-0.2 -1,-0.2 0.918 112.1 46.2 -62.8 -41.7 63.2 42.0 11.7 32 386 A L H X S+ 0 0 26 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.837 108.7 56.3 -69.1 -34.3 61.8 40.0 14.6 33 387 A L H X S+ 0 0 85 -4,-2.8 4,-1.9 -5,-0.2 -1,-0.2 0.883 108.3 47.6 -66.1 -34.6 61.9 43.0 16.8 34 388 A N H X S+ 0 0 95 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.881 109.9 51.4 -73.5 -37.2 59.7 44.9 14.3 35 389 A V H X S+ 0 0 59 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.929 110.6 51.1 -62.8 -44.1 57.3 42.0 13.9 36 390 A K H X S+ 0 0 73 -4,-2.5 4,-3.0 1,-0.2 -2,-0.2 0.906 105.9 53.6 -58.4 -43.3 57.0 42.0 17.8 37 391 A M H X S+ 0 0 107 -4,-1.9 4,-2.1 2,-0.2 -1,-0.2 0.914 110.3 47.5 -61.1 -44.1 56.3 45.7 17.9 38 392 A A H X S+ 0 0 65 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.921 114.7 45.8 -63.4 -45.2 53.4 45.4 15.5 39 393 A L H X S+ 0 0 23 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.910 110.3 54.2 -62.6 -39.4 52.0 42.5 17.4 40 394 A D H X S+ 0 0 53 -4,-3.0 4,-2.8 1,-0.2 5,-0.2 0.893 107.7 48.8 -62.5 -43.9 52.4 44.1 20.7 41 395 A I H X S+ 0 0 103 -4,-2.1 4,-2.0 2,-0.2 -1,-0.2 0.890 111.0 50.9 -67.0 -34.0 50.5 47.2 19.7 42 396 A E H X S+ 0 0 63 -4,-1.7 4,-2.2 2,-0.2 -2,-0.2 0.955 114.0 43.8 -65.0 -48.7 47.6 45.1 18.3 43 397 A I H X S+ 0 0 4 -4,-2.6 4,-2.4 1,-0.2 5,-0.2 0.920 112.7 51.8 -63.7 -41.3 47.3 43.1 21.5 44 398 A A H X S+ 0 0 52 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.860 109.4 51.7 -62.2 -35.5 47.6 46.2 23.7 45 399 A T H X S+ 0 0 64 -4,-2.0 4,-3.1 -5,-0.2 -1,-0.2 0.905 109.0 48.2 -70.1 -42.1 44.8 47.8 21.7 46 400 A Y H X>S+ 0 0 38 -4,-2.2 4,-3.2 2,-0.2 5,-0.6 0.919 110.1 53.0 -62.9 -42.5 42.5 44.9 22.1 47 401 A R H X5S+ 0 0 66 -4,-2.4 6,-2.3 -5,-0.2 4,-1.3 0.885 113.7 44.8 -57.8 -38.0 43.2 44.8 25.9 48 402 A K H X5S+ 0 0 104 -4,-1.7 4,-1.2 4,-0.2 -2,-0.2 0.972 118.4 39.7 -71.6 -50.8 42.3 48.5 25.9 49 403 A L H <5S+ 0 0 129 -4,-3.1 -2,-0.2 1,-0.2 -3,-0.2 0.886 129.2 28.0 -64.9 -41.7 39.2 48.3 23.8 50 404 A L H <5S+ 0 0 86 -4,-3.2 -3,-0.2 -5,-0.2 -1,-0.2 0.741 132.7 27.4 -97.2 -26.4 37.8 45.0 25.3 51 405 A E H < 0 0 122 0, 0.0 4,-0.7 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0 59.0 108.8 36.1 13.3 58 356 B K H >> + 0 0 123 2,-0.2 4,-2.3 1,-0.2 3,-1.4 0.915 360.0 68.2 -70.6 -51.4 106.9 37.5 16.3 59 357 B Q H 3> S+ 0 0 145 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.852 104.9 51.7 -38.3 -36.4 104.8 40.2 14.6 60 358 B L H 3> S+ 0 0 46 -3,-0.3 4,-2.1 2,-0.2 -1,-0.3 0.879 107.5 51.0 -67.0 -40.9 103.2 37.1 13.2 61 359 B E H