==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 04-MAR-97 1GKH . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR S.SU,Y.-G.GAO,H.ZHANG,T.C.TERWILLIGER,A.H.-J.WANG . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6376.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 55.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 36.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 227 0, 0.0 2,-0.7 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 -42.8 -0.5 20.0 2.9 2 2 A I - 0 0 67 61,-0.1 61,-0.7 35,-0.0 2,-0.7 -0.841 360.0-148.1 -87.2 116.7 -0.0 16.7 5.0 3 3 A K E -AB 36 62A 99 -2,-0.7 33,-2.6 33,-0.6 2,-0.5 -0.812 16.8-174.3 -89.8 118.2 1.2 18.0 8.3 4 4 A V E -AB 35 61A 0 57,-2.4 57,-3.1 -2,-0.7 2,-0.5 -0.957 4.7-163.2-113.9 131.0 3.6 15.7 10.0 5 5 A E E -AB 34 60A 51 29,-2.9 29,-2.1 -2,-0.5 2,-0.7 -0.940 10.5-161.6-117.2 121.7 4.9 16.5 13.5 6 6 A I E - B 0 59A 2 53,-2.8 53,-2.0 -2,-0.5 27,-0.1 -0.926 22.4-151.9-101.2 102.7 7.9 14.9 15.3 7 7 A K > - 0 0 64 -2,-0.7 3,-1.4 51,-0.2 4,-0.3 -0.334 28.6-104.0 -64.6 157.6 7.4 15.6 19.0 8 8 A P G > S+ 0 0 107 0, 0.0 3,-1.7 0, 0.0 4,-0.4 0.936 123.6 57.3 -51.6 -41.4 10.4 15.9 21.5 9 9 A S G 3 S+ 0 0 91 1,-0.3 3,-0.4 2,-0.1 -3,-0.0 0.753 101.5 59.4 -61.2 -15.8 9.6 12.4 22.8 10 10 A Q G < S+ 0 0 12 -3,-1.4 -1,-0.3 1,-0.2 22,-0.3 0.380 74.2 84.6-102.9 7.0 10.0 11.1 19.3 11 11 A A S < S+ 0 0 43 -3,-1.7 2,-0.8 -4,-0.3 -1,-0.2 0.882 74.8 94.7 -63.4 -33.2 13.6 12.2 18.7 12 12 A Q + 0 0 157 -4,-0.4 20,-0.3 -3,-0.4 2,-0.2 -0.374 63.5 177.5 -51.5 86.9 14.1 8.8 20.4 13 13 A F - 0 0 83 -2,-0.8 2,-0.3 18,-0.1 18,-0.2 -0.550 18.2-145.9 -98.9 174.7 14.5 6.2 17.6 14 14 A T E -C 30 0A 83 16,-2.1 16,-2.4 -2,-0.2 2,-0.4 -0.814 6.9-139.2-132.8 165.5 15.2 2.4 17.3 15 15 A T E -C 29 0A 70 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.999 8.2-155.0-133.5 125.3 17.0 0.2 14.9 16 16 A R E -C 28 0A 133 12,-2.8 12,-2.8 -2,-0.4 2,-0.3 -0.890 20.2-175.1-103.7 141.1 15.9 -3.2 13.7 17 17 A S E +C 27 0A 81 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.846 17.9 128.6-133.3 159.3 18.4 -5.7 12.5 18 18 A G E -C 26 0A 27 8,-1.6 8,-3.0 -2,-0.3 2,-0.4 -0.970 46.8 -95.0 176.8-173.9 18.9 -9.0 10.9 19 19 A V E -C 25 0A 90 6,-0.3 2,-0.1 -2,-0.3 4,-0.1 -0.952 37.8-119.0-122.6 146.9 20.6 -10.9 8.1 20 20 A S > - 0 0 42 4,-1.6 3,-0.8 -2,-0.4 4,-0.1 -0.473 25.8-107.6 -83.0 160.4 19.1 -11.6 4.7 21 21 A R T 3 S+ 0 0 250 1,-0.3 2,-2.0 2,-0.2 -1,-0.1 0.942 119.4 60.7 -42.1 -54.9 18.5 -15.1 3.1 22 22 A Q T 3 S- 0 0 182 1,-0.2 -1,-0.3 2,-0.1 -2,-0.1 -0.131 128.0 -94.5 -70.2 42.0 21.3 -14.3 0.7 23 23 A G S < S+ 0 0 64 -2,-2.0 -2,-0.2 -3,-0.8 -1,-0.2 0.506 87.6 121.4 60.5 9.6 23.9 -14.0 3.6 24 24 A K - 0 0 119 -4,-0.1 -4,-1.6 -5,-0.0 -1,-0.1 -0.847 52.0-137.8-120.4 121.2 23.7 -10.2 4.1 25 25 A P E -C 19 0A 77 0, 0.0 -6,-0.3 0, 0.0 2,-0.3 -0.007 19.1-164.8 -65.5 166.1 22.8 -8.2 7.3 26 26 A Y E -C 18 0A 86 -8,-3.0 -8,-1.6 2,-0.0 2,-0.3 -0.990 14.9-165.0-148.4 161.2 20.5 -5.2 7.6 27 27 A S E -C 17 0A 75 -2,-0.3 2,-0.5 -10,-0.2 25,-0.3 -0.968 7.6-171.9-145.8 126.1 19.5 -2.4 9.9 28 28 A L E -C 16 0A 47 -12,-2.8 -12,-2.8 -2,-0.3 2,-0.3 -0.978 18.2-136.6-119.8 130.3 16.5 -0.1 9.5 29 29 A N E -C 15 0A 35 -2,-0.5 20,-2.4 -14,-0.2 2,-0.4 -0.629 21.0-163.8 -80.1 141.9 15.8 3.0 11.6 30 30 A E E +CD 14 48A 28 -16,-2.4 -16,-2.1 -2,-0.3 2,-0.3 -0.977 11.0 173.7-130.8 137.2 12.4 3.5 12.9 31 31 A Q E - D 0 47A 4 16,-2.4 16,-3.4 -2,-0.4 2,-0.2 -0.972 23.1-129.8-141.2 150.2 10.7 6.5 14.3 32 32 A L E + D 0 46A 79 -2,-0.3 2,-0.3 -20,-0.3 14,-0.2 -0.619 30.4 165.1 -95.3 160.9 7.3 7.5 15.4 33 33 A C E - D 0 45A 0 12,-1.7 12,-2.9 -2,-0.2 2,-0.5 -0.962 34.3-109.7-162.8 171.2 5.4 10.7 14.4 34 34 A Y E -AD 5 44A 69 -29,-2.1 -29,-2.9 -2,-0.3 2,-0.5 -0.981 25.4-164.1-114.5 127.7 2.1 12.3 14.3 35 35 A V E -AD 4 43A 9 8,-2.5 8,-3.0 -2,-0.5 2,-0.9 -0.940 16.2-136.0-116.2 128.9 0.2 12.8 11.0 36 36 A D E +A 3 0A 64 -33,-2.6 -33,-0.6 -2,-0.5 -2,-0.0 -0.807 29.5 166.9 -91.1 115.3 -2.7 15.2 10.8 37 37 A L - 0 0 102 -2,-0.9 -1,-0.1 4,-0.3 3,-0.1 -0.153 60.5-101.5-111.3 27.4 -5.4 13.6 8.9 38 38 A G S S+ 0 0 73 1,-0.1 -2,-0.1 2,-0.1 0, 0.0 0.466 85.3 123.2 67.6 -9.6 -8.2 16.2 9.8 39 39 A N S S- 0 0 73 2,-0.2 -1,-0.1 1,-0.1 4,-0.0 -0.135 86.5 -76.4 -64.8-179.6 -9.7 13.8 12.4 40 40 A E S S+ 0 0 190 -3,-0.1 -2,-0.1 2,-0.0 -1,-0.1 0.936 115.5 5.7 -50.1 -53.7 -10.1 15.0 16.2 41 41 A Y S S- 0 0 193 -4,-0.1 -4,-0.3 1,-0.0 -2,-0.2 -0.830 94.8 -87.1-118.4 169.2 -6.4 14.5 17.0 42 42 A P - 0 0 48 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.392 47.9-113.9 -63.6 152.7 -3.4 13.5 14.7 43 43 A V E -D 35 0A 44 -8,-3.0 -8,-2.5 -2,-0.1 2,-0.6 -0.684 20.1-116.6 -92.3 147.1 -2.7 9.8 14.3 44 44 A L E -D 34 0A 101 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.685 41.3-179.8 -74.9 123.9 0.3 8.0 15.6 45 45 A V E -D 33 0A 46 -12,-2.9 -12,-1.7 -2,-0.6 2,-0.5 -0.946 22.4-136.4-125.4 146.2 2.3 6.7 12.6 46 46 A K E -D 32 0A 102 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.868 16.8-161.5 -99.1 133.2 5.5 4.7 12.4 47 47 A I E -D 31 0A 5 -16,-3.4 -16,-2.4 -2,-0.5 2,-0.5 -0.873 7.4-158.4-111.3 139.7 8.2 5.6 9.8 48 48 A T E -D 30 0A 41 -2,-0.4 -18,-0.2 -18,-0.2 -2,-0.0 -0.986 24.6-140.7-116.7 113.2 11.0 3.3 8.6 49 49 A L - 0 0 4 -20,-2.4 -20,-0.2 -2,-0.5 3,-0.1 -0.257 19.2 -96.9 -72.3 158.7 13.8 5.4 7.2 50 50 A D > - 0 0 49 1,-0.2 3,-2.5 4,-0.1 -21,-0.2 -0.309 60.5 -66.2 -72.9 165.2 15.9 4.6 4.1 51 51 A E T 3 S- 0 0 186 1,-0.3 -1,-0.2 -23,-0.1 -23,-0.1 -0.210 122.6 -0.1 -51.7 125.2 19.4 3.0 4.4 52 52 A G T 3 S+ 0 0 74 -25,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.645 93.4 141.7 67.5 12.6 21.8 5.3 6.1 53 53 A Q < - 0 0 56 -3,-2.5 -1,-0.2 -24,-0.0 -24,-0.1 -0.767 49.7-128.7 -83.3 125.7 19.1 8.1 6.6 54 54 A P - 0 0 93 0, 0.0 -4,-0.1 0, 0.0 -1,-0.0 -0.366 31.2 -95.2 -62.4 151.6 19.5 9.8 10.0 55 55 A A - 0 0 30 1,-0.1 2,-0.3 -44,-0.1 -44,-0.1 -0.295 46.0 -99.0 -66.3 158.2 16.5 10.1 12.2 56 56 A Y - 0 0 24 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.590 28.9-129.4 -82.4 141.9 14.5 13.3 12.1 57 57 A A - 0 0 61 -2,-0.3 -51,-0.1 1,-0.2 -1,-0.1 -0.440 44.4 -77.5 -74.8 155.7 14.9 16.1 14.7 58 58 A P S S+ 0 0 64 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.164 85.1 82.8 -48.9 147.4 11.7 17.5 16.5 59 59 A G E S-B 6 0A 34 -53,-2.0 -53,-2.8 -3,-0.1 2,-0.4 -0.823 78.6 -53.7 143.2 178.4 9.7 19.9 14.4 60 60 A L E +B 5 0A 82 -2,-0.3 26,-1.8 -55,-0.2 2,-0.3 -0.770 52.7 173.3 -94.1 133.6 7.0 20.3 11.7 61 61 A Y E -BE 4 85A 23 -57,-3.1 -57,-2.4 -2,-0.4 2,-0.3 -0.866 19.9-146.7-132.5 164.8 7.5 18.5 8.5 62 62 A T E -BE 3 84A 39 22,-3.1 22,-2.1 -2,-0.3 2,-0.5 -0.910 35.4 -91.1-132.2 164.2 5.5 17.9 5.4 63 63 A V E - E 0 83A 21 -61,-0.7 2,-0.3 -2,-0.3 20,-0.2 -0.615 36.9-137.9 -77.6 123.1 5.5 14.9 3.0 64 64 A H > - 0 0 83 18,-3.0 3,-2.6 -2,-0.5 18,-0.4 -0.617 19.4-119.5 -79.4 142.9 8.0 15.0 0.1 65 65 A L G > S+ 0 0 145 1,-0.3 3,-2.1 -2,-0.3 -1,-0.1 0.808 108.1 72.5 -54.6 -33.9 6.7 13.9 -3.3 66 66 A S G 3 S+ 0 0 53 1,-0.3 -1,-0.3 16,-0.1 14,-0.2 0.564 77.7 78.8 -59.9 -9.0 9.3 11.2 -3.5 67 67 A S G < S+ 0 0 0 -3,-2.6 12,-3.3 15,-0.3 13,-0.3 0.655 90.1 69.8 -65.1 -18.1 7.2 9.2 -0.8 68 68 A F E < +F 78 0B 67 -3,-2.1 2,-0.3 10,-0.2 10,-0.2 -0.665 53.4 158.2-110.2 157.1 4.9 8.2 -3.6 69 69 A H E -F 77 0B 71 8,-2.6 8,-3.6 -2,-0.3 2,-0.6 -0.985 46.2 -88.2-161.6 166.3 5.0 5.9 -6.5 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 5,-0.1 -0.697 50.3-142.1 -82.5 120.0 2.7 3.9 -8.9 71 71 A G > - 0 0 10 4,-3.1 3,-2.0 -2,-0.6 -1,-0.1 -0.117 28.8 -82.5 -74.5 179.9 2.1 0.5 -7.5 72 72 A Q T 3 S+ 0 0 174 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.675 125.9 46.4 -52.5 -33.9 1.7 -3.0 -8.9 73 73 A F T 3 S- 0 0 171 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.110 122.2 -97.8 -99.5 17.7 -2.0 -2.6 -9.9 74 74 A G S < S+ 0 0 62 -3,-2.0 2,-0.2 1,-0.2 -2,-0.1 0.412 87.9 117.8 82.4 -7.5 -1.5 0.9 -11.6 75 75 A S S S- 0 0 63 1,-0.1 -4,-3.1 -5,-0.1 2,-0.3 -0.514 74.2 -94.8 -89.3 158.3 -2.7 2.9 -8.5 76 76 A L E -F 70 0B 129 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.580 48.2-179.9 -76.2 131.1 -0.7 5.5 -6.5 77 77 A M E -F 69 0B 76 -8,-3.6 -8,-2.6 -2,-0.3 2,-0.4 -0.943 32.3-112.8-122.2 154.5 0.9 4.0 -3.4 78 78 A I E -F 68 0B 99 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.732 23.0-171.0 -81.5 125.8 3.2 5.3 -0.6 79 79 A D S S- 0 0 81 -12,-3.3 2,-0.3 -2,-0.4 -1,-0.2 0.864 71.8 -39.5 -74.3 -76.5 6.7 3.7 -0.9 80 80 A R S S- 0 0 80 -13,-0.3 2,-0.4 -14,-0.2 -1,-0.3 -0.982 71.1 -93.0-145.5 149.7 7.8 5.1 2.5 81 81 A L - 0 0 30 -2,-0.3 2,-0.6 -3,-0.1 -33,-0.1 -0.442 40.9-171.6 -62.9 107.2 7.1 8.6 4.1 82 82 A R - 0 0 38 -2,-0.4 -18,-3.0 -18,-0.4 -15,-0.3 -0.943 12.9-155.7-102.7 116.3 10.0 10.9 3.2 83 83 A L E -E 63 0A 15 -2,-0.6 -20,-0.2 -20,-0.2 -22,-0.0 -0.617 18.3-174.2-104.6 150.8 9.8 14.2 5.1 84 84 A V E -E 62 0A 55 -22,-2.1 -22,-3.1 -2,-0.2 -2,-0.0 -0.978 40.7 -92.6-130.9 140.6 11.1 17.7 4.5 85 85 A P E E 61 0A 101 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.363 360.0 360.0 -55.8 137.8 10.7 20.6 7.0 86 86 A A 0 0 100 -26,-1.8 -25,-0.2 -82,-0.2 -27,-0.0 0.420 360.0 360.0 -63.4 360.0 7.8 22.9 6.7