==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 11-MAR-09 3GL6 . COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Z.WANG,J.SONG,D.J.PATEL . 60 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4539.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 38.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1608 A S 0 0 128 0, 0.0 11,-0.2 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 145.7 -27.8 -36.6 4.3 2 1609 A V - 0 0 73 1,-0.1 2,-0.1 8,-0.1 5,-0.0 -0.462 360.0-139.5 -85.2 153.9 -27.6 -37.1 0.7 3 1610 A C - 0 0 82 -2,-0.2 5,-0.2 2,-0.1 -1,-0.1 -0.223 40.4 -83.8 -94.9-167.3 -30.6 -36.3 -1.6 4 1611 A A S S+ 0 0 108 -2,-0.1 -2,-0.0 3,-0.1 4,-0.0 0.612 92.4 112.7 -79.2 -9.0 -31.8 -38.4 -4.6 5 1612 A A S > S- 0 0 53 1,-0.1 3,-0.7 2,-0.1 -2,-0.1 -0.329 71.3-133.3 -64.7 142.9 -29.2 -36.8 -6.9 6 1613 A Q T 3 S+ 0 0 207 1,-0.3 2,-0.5 -2,-0.0 -1,-0.1 0.881 106.9 36.5 -63.7 -37.5 -26.5 -39.2 -8.2 7 1614 A N T 3 S- 0 0 129 -5,-0.0 2,-0.3 2,-0.0 -1,-0.3 -0.615 83.0-175.3-116.1 70.3 -23.9 -36.6 -7.4 8 1615 A C < - 0 0 25 -3,-0.7 -6,-0.0 -2,-0.5 -2,-0.0 -0.522 15.2-161.5 -69.5 124.0 -25.2 -35.0 -4.2 9 1616 A Q - 0 0 129 -2,-0.3 4,-0.2 4,-0.0 -1,-0.1 0.356 32.4-129.0 -87.1 4.6 -23.0 -32.0 -3.2 10 1617 A R > - 0 0 124 1,-0.1 3,-2.2 2,-0.1 -8,-0.1 0.936 32.2-178.9 47.0 64.9 -24.4 -32.1 0.4 11 1618 A P T 3 S+ 0 0 123 0, 0.0 -1,-0.1 0, 0.0 -9,-0.1 0.683 79.9 70.3 -65.6 -10.7 -25.3 -28.4 0.7 12 1619 A C T 3 S+ 0 0 82 -11,-0.2 -2,-0.1 2,-0.1 -10,-0.0 0.515 77.1 111.8 -80.5 -8.9 -26.4 -29.6 4.2 13 1620 A K S < S- 0 0 75 -3,-2.2 -4,-0.0 -4,-0.2 -3,-0.0 -0.187 78.9-116.4 -66.6 161.4 -22.7 -30.1 5.3 14 1621 A D S S+ 0 0 90 47,-0.1 47,-4.3 46,-0.1 2,-0.3 0.050 89.5 77.1 -87.3 24.7 -21.0 -28.0 7.9 15 1622 A K E -A 60 0A 89 45,-0.3 2,-0.4 46,-0.3 45,-0.2 -0.979 62.0-152.7-135.8 148.3 -18.4 -26.6 5.4 16 1623 A V E -A 59 0A 41 43,-2.2 43,-2.0 -2,-0.3 2,-0.4 -0.988 17.5-143.2-120.4 127.7 -18.6 -23.9 2.7 17 1624 A D E -A 58 0A 22 -2,-0.4 14,-2.5 41,-0.2 15,-0.4 -0.745 19.0-171.4 -95.3 139.3 -16.2 -24.2 -0.2 18 1625 A W E -AB 57 30A 44 39,-2.7 39,-1.0 -2,-0.4 2,-0.3 -0.822 11.4-164.4-125.1 164.7 -14.6 -21.1 -1.8 19 1626 A V E -AB 56 29A 0 10,-2.6 10,-3.0 -2,-0.3 2,-0.4 -0.985 14.8-138.6-148.8 140.0 -12.6 -20.3 -4.9 20 1627 A Q E - B 0 28A 18 35,-2.4 35,-0.4 -2,-0.3 26,-0.3 -0.813 24.8-110.9-104.9 141.6 -10.5 -17.2 -5.7 21 1628 A C - 0 0 0 6,-2.6 26,-0.2 -2,-0.4 5,-0.2 -0.440 20.7-171.2 -72.1 140.3 -10.4 -15.5 -9.1 22 1629 A D S S+ 0 0 66 24,-3.4 25,-0.2 -2,-0.1 -1,-0.1 0.458 70.2 88.9-104.1 -8.3 -7.2 -15.6 -11.1 23 1630 A G S S- 0 0 36 23,-0.6 -1,-0.1 1,-0.1 24,-0.1 0.609 112.7 -85.9 -67.5 -14.9 -8.4 -13.1 -13.7 24 1631 A G S S+ 0 0 62 -3,-0.2 -1,-0.1 3,-0.1 23,-0.0 0.050 112.6 84.8 136.2 -32.6 -7.2 -10.0 -11.8 25 1632 A C S S- 0 0 41 2,-0.1 -3,-0.1 1,-0.1 -4,-0.0 0.742 73.8-152.7 -73.2 -22.6 -9.9 -8.9 -9.3 26 1633 A D + 0 0 84 1,-0.2 2,-0.2 -5,-0.2 -4,-0.1 0.713 39.6 151.4 58.6 23.5 -8.4 -11.5 -6.8 27 1634 A E - 0 0 117 -7,-0.1 -6,-2.6 1,-0.1 2,-0.4 -0.491 45.2-117.4 -88.9 157.3 -11.8 -11.8 -5.1 28 1635 A W E -B 20 0A 75 -8,-0.2 2,-0.3 -2,-0.2 -8,-0.2 -0.763 29.1-173.2 -95.5 135.2 -13.2 -14.8 -3.2 29 1636 A F E -B 19 0A 42 -10,-3.0 -10,-2.6 -2,-0.4 2,-0.4 -0.938 31.0-114.0-126.9 148.2 -16.4 -16.6 -4.4 30 1637 A H E > -B 18 0A 75 -2,-0.3 4,-1.0 -12,-0.2 3,-0.3 -0.668 32.2-131.7 -74.4 132.4 -18.5 -19.4 -2.9 31 1638 A Q T >4>S+ 0 0 5 -14,-2.5 5,-2.2 -2,-0.4 3,-0.5 0.869 104.4 50.5 -57.5 -38.8 -18.0 -22.3 -5.3 32 1639 A V G >45S+ 0 0 105 -15,-0.4 3,-0.9 1,-0.2 -1,-0.2 0.862 104.4 59.1 -69.7 -31.3 -21.7 -23.1 -5.6 33 1640 A C G 345S+ 0 0 93 -3,-0.3 -1,-0.2 1,-0.2 -2,-0.2 0.758 113.2 37.9 -66.8 -25.3 -22.5 -19.4 -6.4 34 1641 A V G <<5S- 0 0 41 -4,-1.0 -1,-0.2 -3,-0.5 -2,-0.2 0.302 113.6-116.5-108.1 6.8 -20.2 -19.6 -9.4 35 1642 A G T < 5 + 0 0 59 -3,-0.9 2,-0.4 -4,-0.3 -3,-0.2 0.800 64.3 139.5 65.8 34.5 -21.2 -23.1 -10.4 36 1643 A V < - 0 0 19 -5,-2.2 -1,-0.2 -6,-0.1 -2,-0.1 -0.874 44.8-135.9-112.3 144.2 -17.8 -24.9 -10.0 37 1644 A S > - 0 0 36 -2,-0.4 4,-2.9 1,-0.1 5,-0.2 -0.514 31.1-107.9 -88.6 161.4 -17.2 -28.3 -8.5 38 1645 A P H > S+ 0 0 67 0, 0.0 4,-1.5 0, 0.0 5,-0.2 0.876 122.7 54.9 -57.2 -34.4 -14.4 -28.9 -6.0 39 1646 A E H > S+ 0 0 138 2,-0.2 4,-2.8 1,-0.2 3,-0.4 0.957 109.9 43.7 -61.7 -53.0 -12.6 -30.8 -8.8 40 1647 A M H > S+ 0 0 76 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.940 111.1 55.7 -56.7 -50.1 -12.8 -27.8 -11.2 41 1648 A A H < S+ 0 0 3 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.789 117.2 34.7 -54.7 -33.1 -11.8 -25.4 -8.5 42 1649 A E H < S+ 0 0 97 -4,-1.5 -1,-0.2 -3,-0.4 -2,-0.2 0.839 115.5 50.8 -93.0 -36.9 -8.6 -27.4 -7.8 43 1650 A N H < S+ 0 0 125 -4,-2.8 2,-0.3 -5,-0.2 -2,-0.2 0.541 115.7 19.0 -83.2 -9.1 -7.5 -28.7 -11.2 44 1651 A E S < S- 0 0 114 -4,-1.4 2,-0.0 -5,-0.2 0, 0.0 -0.916 86.4 -83.6-149.7 175.4 -7.6 -25.5 -13.2 45 1652 A D - 0 0 93 -2,-0.3 2,-0.4 9,-0.1 -24,-0.1 -0.266 37.1-133.1 -77.8 169.3 -7.7 -21.7 -12.9 46 1653 A Y - 0 0 33 -26,-0.3 -24,-3.4 -5,-0.0 -23,-0.6 -0.992 18.1-175.2-130.2 128.0 -10.8 -19.7 -12.2 47 1654 A I - 0 0 68 -2,-0.4 5,-0.1 -26,-0.2 -26,-0.1 -0.971 20.3-140.4-122.6 114.2 -11.8 -16.5 -14.1 48 1655 A C > - 0 0 0 -2,-0.5 4,-1.5 1,-0.1 3,-0.4 -0.143 27.9-103.3 -68.5 167.6 -14.9 -14.7 -12.8 49 1656 A I T 4 S+ 0 0 125 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.805 120.6 52.9 -63.4 -30.1 -17.5 -13.2 -15.2 50 1657 A N T 4 S+ 0 0 131 1,-0.2 -1,-0.2 0, 0.0 -2,-0.0 0.792 114.9 40.3 -76.2 -28.0 -16.2 -9.6 -14.5 51 1658 A C T 4 0 0 40 -3,-0.4 -2,-0.2 -27,-0.0 -1,-0.2 0.605 360.0 360.0 -93.9 -13.8 -12.6 -10.6 -15.4 52 1659 A A < 0 0 125 -4,-1.5 -4,-0.1 -5,-0.1 -3,-0.0 -0.096 360.0 360.0 -64.7 360.0 -13.6 -12.8 -18.3 53 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 54 1 B A 0 0 31 0, 0.0 2,-0.3 0, 0.0 -33,-0.1 0.000 360.0 360.0 360.0 166.9 -7.2 -22.4 -8.4 55 2 B R + 0 0 100 -35,-0.4 -35,-2.4 -9,-0.1 2,-0.3 -0.549 360.0 174.8 -71.6 129.9 -6.8 -21.1 -4.9 56 3 B T E +A 19 0A 46 -2,-0.3 2,-0.3 -37,-0.2 -37,-0.2 -0.849 14.6 178.7-132.9 169.0 -9.5 -22.5 -2.6 57 4 B X E -A 18 0A 121 -39,-1.0 -39,-2.7 -2,-0.3 2,-0.4 -0.972 18.1-136.3-163.3 162.2 -10.5 -22.6 1.0 58 5 B Q E -A 17 0A 112 -2,-0.3 2,-0.2 -41,-0.2 -41,-0.2 -0.982 18.7-177.5-128.7 139.9 -13.2 -24.0 3.3 59 6 B T E -A 16 0A 48 -43,-2.0 -43,-2.2 -2,-0.4 2,-0.2 -0.754 39.7 -63.4-126.5 176.8 -15.0 -22.2 6.2 60 7 B A E A 15 0A 52 -2,-0.2 -45,-0.3 -45,-0.2 -46,-0.1 -0.452 360.0 360.0 -77.1 132.3 -17.6 -23.3 8.7 61 8 B R 0 0 196 -47,-4.3 -46,-0.3 -2,-0.2 -1,-0.2 0.711 360.0 360.0 59.7 360.0 -21.2 -24.5 7.9