==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 06-APR-06 2GMC . COMPND 2 MOLECULE: LACTOFERRIN-BASED SYNTHETIC PEPTIDE C12-LF11; . SOURCE 2 SYNTHETIC: YES . AUTHOR B.JAPELJ . 11 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1757.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 2 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 218 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -26.8 2.4 0.2 -1.5 2 2 A Q - 0 0 153 1,-0.1 3,-0.0 2,-0.1 0, 0.0 0.752 360.0 -0.4 -63.6 -27.9 2.4 -3.7 -2.0 3 3 A W S > S+ 0 0 129 2,-0.0 3,-2.3 4,-0.0 -1,-0.1 0.204 75.1 140.5-152.9 29.4 -1.2 -3.6 -3.5 4 4 A Q T 3 S+ 0 0 124 1,-0.3 3,-0.1 2,-0.1 -2,-0.1 0.707 97.4 18.1 -55.6 -23.0 -2.7 0.0 -3.7 5 5 A R T 3 S+ 0 0 213 -4,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.058 118.4 73.5-125.3 28.8 -4.3 -0.8 -7.2 6 6 A N < + 0 0 69 -3,-2.3 4,-0.1 1,-0.1 -2,-0.1 -0.453 49.3 106.7-144.5 70.0 -4.1 -4.8 -7.1 7 7 A I S S+ 0 0 88 2,-0.1 -1,-0.1 -3,-0.1 -3,-0.1 0.623 76.3 58.2-112.8 -22.8 -6.6 -6.6 -4.8 8 8 A R S S+ 0 0 231 1,-0.1 3,-0.3 -3,-0.1 -2,-0.1 0.895 113.9 39.9 -78.7 -38.4 -9.1 -8.2 -7.4 9 9 A K S S+ 0 0 168 1,-0.2 2,-1.4 2,-0.1 -1,-0.1 0.901 117.0 51.1 -62.3 -44.6 -6.2 -10.1 -9.1 10 10 A V 0 0 92 1,-0.2 -1,-0.2 -4,-0.1 -4,-0.1 -0.571 360.0 360.0 -89.1 70.3 -4.7 -10.9 -5.5 11 11 A R 0 0 272 -2,-1.4 -1,-0.2 -3,-0.3 -2,-0.1 0.888 360.0 360.0 -81.1 360.0 -8.2 -12.2 -4.4