==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 06-APR-06 2GMD . COMPND 2 MOLECULE: LACTOFERRIN-BASED SYNTHETIC PEPTIDE C12-LF11; . SOURCE 2 SYNTHETIC: YES . AUTHOR B.JAPELJ . 11 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1788.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 27.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 234 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -61.1 2.6 1.4 0.0 2 2 A Q + 0 0 199 2,-0.0 2,-0.1 0, 0.0 0, 0.0 0.847 360.0 51.9 -74.8 -44.4 3.2 -1.9 -1.9 3 3 A W - 0 0 119 1,-0.1 4,-0.1 2,-0.0 0, 0.0 -0.228 65.5-145.4 -90.3 179.4 -0.5 -3.2 -1.6 4 4 A Q S S- 0 0 158 2,-0.2 -1,-0.1 -2,-0.1 3,-0.0 0.601 74.8 -26.3-106.8 -97.6 -4.1 -1.9 -2.4 5 5 A R S S+ 0 0 217 1,-0.1 2,-0.1 2,-0.0 -2,-0.0 -0.406 114.9 73.9-125.1 60.9 -7.0 -3.0 0.0 6 6 A N + 0 0 53 3,-0.0 -2,-0.2 1,-0.0 3,-0.1 -0.590 40.7 158.3-164.5 96.3 -6.0 -6.5 1.5 7 7 A I S S+ 0 0 102 1,-0.2 2,-0.8 -2,-0.1 -2,-0.0 0.946 72.3 49.0 -85.9 -64.6 -3.2 -6.4 4.3 8 8 A R S > S- 0 0 170 1,-0.1 2,-1.8 2,-0.0 3,-0.6 -0.701 86.5-140.7 -74.5 105.3 -3.8 -9.8 6.1 9 9 A K T 3 S+ 0 0 207 -2,-0.8 -1,-0.1 1,-0.2 -3,-0.0 -0.477 71.1 98.7 -79.1 83.7 -4.0 -12.4 3.3 10 10 A V T 3 0 0 140 -2,-1.8 -1,-0.2 1,-0.1 -4,-0.0 0.548 360.0 360.0-133.0 -35.0 -6.9 -14.7 4.5 11 11 A R < 0 0 189 -3,-0.6 -1,-0.1 0, 0.0 0, 0.0 -0.570 360.0 360.0 -76.1 360.0 -10.2 -13.5 2.7