==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 07-APR-06 2GMO . COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS . AUTHOR J.BOUDET,F.TARENDEAU,D.GUILLIGAY,P.MAS,C.M.BOUGAULT, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5245.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 14.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 685 A G > 0 0 18 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 92.7 -7.4 2.3 -9.5 2 686 A V H > + 0 0 96 2,-0.2 4,-1.3 1,-0.2 5,-0.2 0.791 360.0 56.3 -68.4 -28.1 -5.6 5.3 -10.8 3 687 A E H > S+ 0 0 22 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.969 114.9 34.7 -66.9 -55.0 -3.3 5.2 -7.8 4 688 A S H >>S+ 0 0 1 1,-0.2 4,-3.0 2,-0.2 5,-0.7 0.748 106.8 74.6 -71.2 -25.6 -2.1 1.7 -8.4 5 689 A A H <5S+ 0 0 55 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.955 100.3 39.7 -52.2 -58.4 -2.3 2.2 -12.2 6 690 A V H <5S+ 0 0 105 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.927 116.2 52.4 -57.3 -46.9 0.8 4.4 -12.3 7 691 A L H <5S- 0 0 27 -4,-1.2 -1,-0.2 -5,-0.2 -2,-0.2 0.858 88.9-158.2 -57.4 -39.4 2.6 2.1 -9.8 8 692 A R T <5S+ 0 0 181 -4,-3.0 52,-0.2 51,-0.1 -3,-0.1 0.848 78.9 52.8 60.5 36.6 1.7 -0.9 -11.9 9 693 A G S + 0 0 51 -2,-0.2 3,-1.8 1,-0.2 4,-0.2 0.907 47.2 168.6 55.3 44.2 -4.2 4.0 8.7 18 702 A R G > + 0 0 183 1,-0.3 3,-1.1 2,-0.2 -1,-0.2 0.574 56.0 93.8 -64.2 -7.8 -2.0 7.0 9.5 19 703 A R G 3 S+ 0 0 244 1,-0.3 -1,-0.3 2,-0.1 -2,-0.1 0.745 76.7 62.5 -56.7 -22.7 -0.5 4.8 12.2 20 704 A Y G < S- 0 0 77 -3,-1.8 -1,-0.3 1,-0.0 -2,-0.2 0.877 79.9-172.1 -70.6 -38.5 2.1 3.9 9.5 21 705 A G < + 0 0 64 -3,-1.1 -3,-0.1 -4,-0.2 -2,-0.1 0.874 36.4 130.4 44.9 49.9 3.3 7.5 9.3 22 706 A P + 0 0 48 0, 0.0 18,-0.1 0, 0.0 -1,-0.1 0.915 27.0 173.5 -92.3 -66.9 5.6 6.8 6.3 23 707 A A + 0 0 71 16,-0.5 17,-0.2 1,-0.1 2,-0.0 0.876 32.3 148.1 58.2 40.7 4.8 9.5 3.6 24 708 A L - 0 0 58 15,-0.6 17,-0.4 1,-0.1 2,-0.2 -0.114 46.4 -90.3 -91.7-167.7 7.7 8.2 1.4 25 709 A S >> - 0 0 68 15,-0.1 4,-0.9 1,-0.1 3,-0.8 -0.567 27.7-112.6-103.8 169.1 8.1 8.2 -2.3 26 710 A I H >> S+ 0 0 74 1,-0.2 4,-1.0 2,-0.2 3,-0.6 0.885 113.6 65.8 -66.5 -41.3 7.2 5.6 -5.0 27 711 A N H 34 S+ 0 0 123 1,-0.3 -1,-0.2 2,-0.2 4,-0.1 0.724 109.3 41.7 -54.0 -20.0 10.8 4.8 -5.8 28 712 A E H X4 S+ 0 0 80 -3,-0.8 3,-1.9 2,-0.1 4,-0.5 0.665 95.4 79.2 -98.1 -24.8 10.9 3.5 -2.2 29 713 A L H X< S+ 0 0 0 -4,-0.9 3,-0.9 -3,-0.6 -2,-0.2 0.786 87.4 60.2 -53.4 -30.8 7.5 1.8 -2.5 30 714 A S T 3< S+ 0 0 98 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.1 0.751 98.1 57.5 -71.3 -23.8 9.3 -1.0 -4.3 31 715 A N T < S+ 0 0 129 -3,-1.9 -1,-0.2 -4,-0.1 -2,-0.2 0.553 88.6 108.2 -81.9 -8.5 11.5 -1.6 -1.3 32 716 A L S < S- 0 0 47 -3,-0.9 2,-0.4 -4,-0.5 6,-0.1 0.025 74.7-107.5 -60.0 173.8 8.3 -2.2 0.8 33 717 A A > - 0 0 58 4,-0.2 3,-1.4 1,-0.1 19,-0.3 -0.878 34.0-103.0-110.1 141.4 7.3 -5.6 2.0 34 718 A K T 3 S+ 0 0 95 -2,-0.4 20,-0.1 1,-0.2 3,-0.1 -0.150 105.7 28.4 -58.4 154.6 4.3 -7.6 0.6 35 719 A G T 3 S+ 0 0 18 18,-0.9 -1,-0.2 1,-0.3 2,-0.2 0.435 106.9 103.0 73.2 -2.5 1.1 -7.7 2.6 36 720 A E < - 0 0 94 -3,-1.4 16,-1.7 17,-0.1 -1,-0.3 -0.577 59.2-142.9-107.4 170.8 2.1 -4.3 3.9 37 721 A K E -B 51 0A 51 -2,-0.2 2,-0.2 14,-0.2 14,-0.2 -0.703 9.1-167.7-125.2 177.9 0.9 -0.8 3.1 38 722 A A E -B 50 0A 2 12,-0.8 12,-1.6 -2,-0.2 2,-0.5 -0.780 26.6-117.3-172.4 127.3 2.4 2.7 2.9 39 723 A N E +B 49 0A 7 10,-0.3 -15,-0.6 -2,-0.2 -16,-0.5 -0.525 42.5 165.0 -73.7 116.4 1.0 6.2 2.6 40 724 A V E -B 48 0A 2 8,-3.0 8,-1.6 -2,-0.5 2,-0.1 -0.992 35.9-115.6-134.1 140.9 2.0 7.9 -0.7 41 725 A L E -B 47 0A 74 -17,-0.4 6,-0.2 -2,-0.4 -15,-0.1 -0.451 19.1-172.0 -74.4 146.3 0.7 10.9 -2.4 42 726 A I S S+ 0 0 74 4,-1.4 -1,-0.1 -2,-0.1 5,-0.1 0.280 88.1 8.7-119.1 5.7 -1.1 10.5 -5.8 43 727 A G S S- 0 0 40 3,-0.3 4,-0.1 0, 0.0 -2,-0.0 0.212 104.8 -97.0-171.7 22.8 -1.4 14.2 -6.6 44 728 A Q S S+ 0 0 161 2,-0.2 3,-0.1 1,-0.1 -3,-0.0 0.728 121.8 57.6 58.9 21.9 0.5 16.2 -4.0 45 729 A G S S+ 0 0 60 1,-0.2 2,-0.6 0, 0.0 -1,-0.1 0.451 90.1 65.6-149.1 -26.1 -2.8 16.7 -2.2 46 730 A D - 0 0 75 2,-0.1 -4,-1.4 -6,-0.0 2,-0.8 -0.927 61.7-160.0-113.5 113.6 -4.2 13.2 -1.4 47 731 A V E + B 0 41A 71 -2,-0.6 2,-0.4 -6,-0.2 -6,-0.2 -0.812 27.1 154.1 -95.6 107.5 -2.3 11.1 1.0 48 732 A V E - B 0 40A 3 -8,-1.6 -8,-3.0 -2,-0.8 -33,-0.3 -0.990 35.9-127.8-135.0 142.9 -3.3 7.4 0.6 49 733 A L E -AB 14 39A 0 -35,-2.5 -35,-1.0 -2,-0.4 -36,-0.9 -0.483 21.6-138.1 -87.4 157.1 -1.5 4.2 1.4 50 734 A V E -AB 12 38A 2 -12,-1.6 -12,-0.8 -37,-0.2 2,-0.5 -0.734 5.0-133.1-112.6 165.8 -1.0 1.3 -1.1 51 735 A M E -AB 11 37A 3 -40,-1.2 -40,-1.3 -2,-0.3 -14,-0.2 -0.964 19.8-140.2-124.2 115.6 -1.3 -2.4 -0.7 52 736 A K - 0 0 7 -16,-1.7 -42,-0.1 -2,-0.5 -18,-0.1 0.123 44.7 -61.3 -60.4-178.6 1.4 -4.6 -2.2 53 737 A R - 0 0 70 -44,-0.3 -18,-0.9 1,-0.1 -1,-0.2 -0.282 32.9-137.2 -67.1 152.6 0.7 -7.9 -4.0 54 738 A K S S- 0 0 97 -20,-0.1 -1,-0.1 -3,-0.1 -2,-0.1 0.558 87.8 -39.4 -84.5 -9.8 -1.0 -10.8 -2.1 55 739 A R S S- 0 0 225 2,-0.0 2,-0.3 0, 0.0 -2,-0.1 -0.095 118.0 -8.3-173.6 -72.5 1.5 -13.1 -3.8 56 740 A D + 0 0 133 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.969 62.0 143.0-153.2 133.6 2.4 -12.4 -7.4 57 741 A S - 0 0 24 -2,-0.3 -4,-0.1 1,-0.1 -2,-0.0 -0.941 42.1-136.9-168.3 145.7 1.0 -10.1 -10.1 58 742 A S S S- 0 0 105 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.937 107.3 -4.6 -72.2 -48.7 2.3 -7.9 -13.0 59 743 A I S S- 0 0 98 -50,-0.1 -49,-0.6 3,-0.0 -50,-0.4 0.388 101.5-116.9-124.3 -4.7 0.2 -4.9 -12.3 60 744 A L - 0 0 3 -51,-0.2 -50,-0.2 -52,-0.2 -51,-0.1 0.912 31.3-102.2 64.1 101.4 -1.9 -6.3 -9.4 61 745 A T + 0 0 117 -52,-0.1 2,-0.2 -50,-0.1 -1,-0.1 -0.301 62.6 147.9 -54.2 124.7 -5.6 -6.4 -10.2 62 746 A D - 0 0 39 -51,-0.1 2,-0.3 8,-0.1 -51,-0.1 -0.758 32.2-147.4-144.7-170.6 -7.3 -3.5 -8.5 63 747 A S > - 0 0 50 -2,-0.2 3,-1.0 3,-0.2 -51,-0.1 -0.919 22.3-136.5-168.7 141.2 -10.2 -1.0 -8.8 64 748 A Q T 3 S+ 0 0 128 -2,-0.3 3,-0.2 1,-0.2 -1,-0.0 0.387 89.5 92.0 -81.6 4.3 -10.9 2.6 -7.8 65 749 A T T 3 S+ 0 0 118 1,-0.2 2,-0.6 2,-0.1 -1,-0.2 0.715 84.3 54.0 -70.2 -20.4 -14.4 1.5 -6.6 66 750 A A < + 0 0 24 -3,-1.0 -1,-0.2 1,-0.1 -3,-0.2 -0.854 55.6 151.5-120.1 95.2 -12.9 1.0 -3.2 67 751 A T S S+ 0 0 69 -2,-0.6 -52,-0.3 -3,-0.2 -1,-0.1 0.736 70.6 64.0 -92.3 -27.9 -11.1 4.1 -1.8 68 752 A K S S- 0 0 170 1,-0.2 2,-0.3 -54,-0.2 -1,-0.1 0.936 126.6 -40.4 -59.7 -45.9 -11.7 3.4 1.9 69 753 A R S S- 0 0 153 -57,-0.1 -1,-0.2 -55,-0.1 -56,-0.1 -0.895 78.1 -62.5-162.9-172.2 -9.6 0.3 1.5 70 754 A I - 0 0 28 -2,-0.3 -57,-0.1 2,-0.2 -3,-0.1 -0.347 37.0-120.9 -84.5 168.1 -8.8 -2.7 -0.8 71 755 A R S S+ 0 0 138 -5,-0.1 2,-0.3 -8,-0.1 -1,-0.1 0.153 90.2 74.9 -93.2 18.1 -11.2 -5.4 -1.9 72 756 A M S S- 0 0 73 2,-0.0 2,-0.5 0, 0.0 -2,-0.2 -0.948 72.4-134.1-131.9 151.7 -9.0 -8.1 -0.4 73 757 A A - 0 0 71 -2,-0.3 2,-0.5 0, 0.0 -2,-0.0 -0.919 16.4-161.7-109.6 123.9 -8.2 -9.3 3.1 74 758 A I 0 0 66 -2,-0.5 -2,-0.0 1,-0.1 -20,-0.0 -0.909 360.0 360.0-108.4 123.8 -4.6 -9.9 4.2 75 759 A N 0 0 219 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 0.356 360.0 360.0-136.0 360.0 -3.9 -12.0 7.2