==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING (VIRAL) 13-JAN-86 2GN5 . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; . AUTHOR G.D.BRAYER,A.MCPHERSON . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6225.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 40.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 20.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 182 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -94.6 -2.4 27.1 4.2 2 2 A I + 0 0 116 1,-0.1 2,-0.1 2,-0.0 84,-0.0 0.744 360.0 174.6 -41.0 160.5 -2.1 23.4 4.7 3 3 A K - 0 0 89 84,-0.1 -1,-0.1 0, 0.0 83,-0.0 -0.024 63.6 -47.0-116.5-157.6 -0.7 20.1 3.3 4 4 A V S S- 0 0 71 -2,-0.1 3,-0.1 2,-0.0 58,-0.1 0.559 72.1-145.5 -80.5 -13.5 -0.6 16.4 4.6 5 5 A E + 0 0 48 1,-0.2 33,-1.8 32,-0.1 2,-0.9 0.771 47.0 163.5 45.9 83.7 0.7 17.1 8.2 6 6 A I B +A 37 0A 3 55,-0.4 55,-1.0 1,-0.3 31,-0.2 -0.857 26.0 179.4-116.3 41.6 3.1 14.9 10.5 7 7 A K + 0 0 61 -2,-0.9 54,-1.2 29,-0.5 53,-0.9 0.961 43.9 152.3 -29.3 -59.4 3.2 18.3 12.3 8 8 A P + 0 0 12 0, 0.0 2,-0.8 0, 0.0 28,-0.3 -0.538 25.6 93.2-179.6-150.9 5.3 15.9 14.2 9 9 A S - 0 0 12 -2,-0.4 2,-0.2 48,-0.2 5,-0.1 -0.798 41.2-169.0-100.8 86.0 8.1 15.3 16.4 10 10 A Q - 0 0 94 -2,-0.8 49,-0.1 1,-0.2 24,-0.1 -0.690 37.9-114.4 -83.4 157.8 6.9 15.2 19.7 11 11 A A S S+ 0 0 79 1,-0.3 -1,-0.2 -2,-0.2 3,-0.1 0.792 123.7 56.1 -54.4 -34.5 9.9 15.3 22.0 12 12 A Q S > S+ 0 0 133 1,-0.3 2,-2.1 2,-0.1 3,-0.5 0.765 98.3 68.5 -61.0 -35.3 8.7 11.7 23.0 13 13 A F T 3 + 0 0 8 1,-0.2 -1,-0.3 45,-0.1 23,-0.1 -0.400 66.5 107.0 -89.6 83.3 9.0 11.1 19.4 14 14 A T T 3 + 0 0 61 -2,-2.1 42,-0.3 -3,-0.1 -1,-0.2 0.759 50.7 115.4-117.6 -53.6 12.7 11.3 19.1 15 15 A T < - 0 0 59 -3,-0.5 18,-0.1 1,-0.1 41,-0.1 0.656 43.0-166.4 22.6-171.0 13.7 7.8 18.6 16 16 A R + 0 0 191 16,-0.5 17,-0.2 39,-0.1 -1,-0.1 -0.022 17.3 176.2 129.2 130.1 15.3 5.6 15.9 17 17 A S - 0 0 87 15,-0.3 2,-2.7 -2,-0.0 14,-0.1 -0.190 19.2-148.3-151.2 67.5 15.0 1.6 16.6 18 18 A G - 0 0 30 1,-0.2 2,-3.6 14,-0.1 12,-0.3 0.215 7.5-146.0 -19.7 31.9 16.3 -0.7 14.0 19 19 A V S S+ 0 0 97 -2,-2.7 -1,-0.2 1,-0.1 2,-0.1 0.365 70.4 23.6 7.0 19.7 14.3 -3.9 13.9 20 20 A S - 0 0 67 -2,-3.6 -1,-0.1 8,-0.2 9,-0.1 -0.461 62.5-114.8-161.9-143.1 17.5 -6.1 13.0 21 21 A R S S- 0 0 183 -2,-0.1 2,-0.3 -3,-0.0 9,-0.2 -0.081 71.8 -49.5-120.0-107.5 21.3 -7.2 12.7 22 22 A Q - 0 0 160 4,-0.1 2,-0.2 7,-0.1 5,-0.1 -0.743 60.7-174.1-154.0 127.3 23.2 -7.6 9.4 23 23 A G > + 0 0 19 -2,-0.3 4,-0.6 1,-0.1 -3,-0.0 -0.115 12.6 173.0-121.9-174.0 21.4 -9.7 7.0 24 24 A K T >4 S+ 0 0 171 -2,-0.2 3,-0.6 2,-0.2 -1,-0.1 -0.297 80.4 34.9-170.7 -98.1 22.8 -10.8 3.6 25 25 A P T 34 S+ 0 0 103 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.612 155.0 6.4 -40.9 -24.3 20.6 -13.3 1.6 26 26 A Y T 34 S- 0 0 210 0, 0.0 2,-0.2 0, 0.0 -2,-0.2 -0.416 104.7-172.1-150.1 87.4 18.0 -11.2 3.3 27 27 A S << - 0 0 60 -3,-0.6 2,-0.5 -4,-0.6 -3,-0.0 -0.549 12.3-126.6-100.3 173.3 20.0 -8.1 5.1 28 28 A L + 0 0 68 -2,-0.2 2,-1.0 2,-0.0 -8,-0.2 -0.433 37.5 148.4-152.6 104.8 19.2 -5.3 7.5 29 29 A N + 0 0 90 -2,-0.5 2,-0.3 -10,-0.1 22,-0.2 -0.731 32.2 163.7 -88.5 93.0 19.6 -1.5 7.8 30 30 A E + 0 0 33 -2,-1.0 -10,-0.1 -12,-0.3 20,-0.1 -0.400 11.2 168.3-117.3 77.2 16.5 -0.6 9.8 31 31 A Q - 0 0 22 -2,-0.3 2,-0.3 18,-0.2 18,-0.2 -0.477 20.4-166.4 -92.1 157.6 16.2 2.9 11.5 32 32 A L - 0 0 21 16,-0.2 -16,-0.5 -2,-0.1 2,-0.4 -0.995 14.2-169.2-135.2 143.9 12.8 3.6 12.8 33 33 A C B -C 47 0B 3 14,-3.1 14,-1.4 -2,-0.3 2,-0.1 -0.999 18.7-135.8-146.7 140.3 10.8 6.6 14.1 34 34 A Y + 0 0 106 -2,-0.4 2,-0.2 12,-0.3 13,-0.2 -0.010 37.8 154.1 -73.7 156.4 7.4 7.2 15.8 35 35 A V - 0 0 2 10,-0.4 10,-1.0 -2,-0.1 2,-0.3 -0.935 25.8-139.3-172.5-179.9 5.4 10.1 14.3 36 36 A D E - B 0 44A 19 8,-0.3 2,-0.6 -28,-0.3 -29,-0.5 -0.921 11.6-123.1-158.8 146.1 1.7 11.1 14.2 37 37 A L E -AB 6 43A 38 6,-0.6 6,-1.8 -2,-0.3 4,-0.3 -0.593 10.1-129.5-143.7 141.0 -0.8 12.5 11.9 38 38 A G + 0 0 7 -33,-1.8 -32,-0.0 -2,-0.6 -2,-0.0 -0.179 54.8 125.6 -46.7 104.9 -3.2 15.2 11.4 39 39 A N S S- 0 0 116 0, 0.0 -1,-0.2 0, 0.0 -34,-0.0 0.468 94.6 -44.0-122.9 -86.5 -6.4 13.8 10.3 40 40 A E S S+ 0 0 172 1,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.130 144.5 25.0-129.4 -52.1 -9.7 14.4 12.1 41 41 A Y S S- 0 0 187 -4,-0.3 2,-1.2 2,-0.0 -4,-0.1 -0.974 102.5-100.5-144.9 130.5 -7.3 13.8 15.4 42 42 A P - 0 0 61 0, 0.0 2,-0.5 0, 0.0 -4,-0.3 -0.266 60.2-141.9 -34.7 72.6 -3.6 14.3 15.4 43 43 A V E -B 37 0A 70 -6,-1.8 -6,-0.6 -2,-1.2 -7,-0.1 -0.693 23.4-131.0-156.4 157.7 -2.1 10.8 15.0 44 44 A L E +B 36 0A 88 -2,-0.5 2,-0.3 -8,-0.3 -8,-0.3 0.462 40.7 132.1 -18.3 97.9 0.3 8.0 15.7 45 45 A V - 0 0 71 -10,-1.0 2,-0.5 2,-0.0 -10,-0.4 -0.992 48.2-113.5-134.1 165.5 2.1 5.9 13.0 46 46 A K - 0 0 111 -2,-0.3 2,-0.4 -12,-0.2 -12,-0.3 -0.943 11.8-149.3-123.5 123.1 5.8 5.0 12.5 47 47 A I B -C 33 0B 9 -14,-1.4 -14,-3.1 -2,-0.5 2,-0.9 -0.653 10.1-153.8 -84.1 128.3 7.9 6.2 9.7 48 48 A T - 0 0 44 -2,-0.4 -16,-0.2 -16,-0.2 33,-0.1 -0.914 35.4-172.9-122.9 83.6 10.4 3.3 9.0 49 49 A L - 0 0 2 -2,-0.9 2,-0.5 -18,-0.2 -18,-0.2 0.219 20.7 -59.6 -52.4-166.0 13.0 5.6 7.5 50 50 A D - 0 0 25 4,-0.2 2,-1.0 3,-0.1 -1,-0.1 -0.711 29.0-141.7-115.2 137.2 16.3 5.6 5.8 51 51 A E S S+ 0 0 42 -2,-0.5 -22,-0.1 -22,-0.2 -1,-0.0 -0.760 104.0 45.9 -97.0 101.4 19.3 4.1 7.2 52 52 A G S S+ 0 0 65 -2,-1.0 -1,-0.2 0, 0.0 -2,-0.0 -0.834 106.8 96.6 169.8 -54.7 21.8 6.6 5.9 53 53 A Q - 0 0 79 1,-0.1 -3,-0.1 -22,-0.0 -22,-0.1 -0.349 67.7-155.7 -57.0 78.7 19.3 8.5 7.2 54 54 A P - 0 0 96 0, 0.0 -4,-0.2 0, 0.0 -1,-0.1 0.212 36.2 -67.6 -57.8 169.2 19.2 10.0 10.7 55 55 A A - 0 0 45 -40,-0.1 2,-0.4 1,-0.1 -39,-0.1 0.060 36.6-123.2 -80.4 162.4 16.4 11.0 12.8 56 56 A Y - 0 0 33 -42,-0.3 -1,-0.1 -41,-0.1 5,-0.0 -0.791 34.2-128.6 -92.7 154.0 14.0 13.7 12.4 57 57 A A - 0 0 51 -2,-0.4 2,-1.7 2,-0.1 -48,-0.2 -0.515 39.3 -64.3-106.9 165.0 14.0 16.0 15.2 58 58 A P S S+ 0 0 67 0, 0.0 -47,-0.1 0, 0.0 -45,-0.1 0.215 95.6 74.7 -28.7 -3.4 11.1 17.3 17.3 59 59 A G S S- 0 0 42 -2,-1.7 27,-0.4 -49,-0.1 -2,-0.1 -0.286 80.9 -61.7-104.8 74.3 9.0 19.4 14.8 60 60 A L + 0 0 87 -53,-0.9 26,-3.7 25,-0.1 -53,-0.2 0.905 49.8 162.0 65.7 84.4 6.5 19.8 11.7 61 61 A Y B -D 85 0C 40 -54,-1.2 -55,-0.4 -55,-1.0 25,-0.2 -0.775 14.8-160.7-113.4 152.2 7.6 18.3 8.6 62 62 A T - 0 0 4 22,-1.6 22,-0.2 23,-0.3 2,-0.1 -0.543 20.3 -12.9-146.2-169.6 5.6 17.4 5.4 63 63 A V S S- 0 0 38 20,-0.2 3,-0.2 21,-0.1 20,-0.2 -0.126 73.9 -15.6 -53.6 136.4 5.4 15.4 2.0 64 64 A H + 0 0 117 1,-0.2 3,-0.4 -2,-0.1 -2,-0.1 -0.223 38.1 159.7 57.3-169.7 6.7 13.3 -0.8 65 65 A L S S- 0 0 110 1,-1.5 2,-0.7 3,-0.1 -1,-0.2 0.027 106.6 -40.7 109.9 56.4 10.7 13.5 -0.9 66 66 A S S S+ 0 0 50 -3,-0.2 -1,-1.5 16,-0.1 2,-0.5 -0.892 113.5 130.5 108.6-104.3 9.9 10.3 -2.9 67 67 A S + 0 0 2 -2,-0.7 2,-0.2 -3,-0.4 -1,-0.1 -0.434 47.1 60.0 70.9 -37.6 7.2 9.1 -0.8 68 68 A F + 0 0 73 -2,-0.5 9,-0.4 1,-0.1 12,-0.1 -0.596 63.6 178.5-105.4 174.1 4.1 8.1 -2.9 69 69 A K - 0 0 80 7,-2.7 2,-0.2 -2,-0.2 6,-0.2 0.380 35.8-138.1-138.0-107.1 4.2 5.4 -5.6 70 70 A V + 0 0 75 3,-0.0 2,-3.8 8,-0.0 4,-0.3 -0.725 25.3 170.4 162.1 -64.2 2.3 3.3 -8.3 71 71 A G S S- 0 0 48 -2,-0.2 4,-0.1 5,-0.1 2,-0.0 -0.791 82.3 -7.1 71.4 -87.2 3.7 0.1 -7.8 72 72 A Q S S- 0 0 117 -2,-3.8 2,-0.4 3,-0.1 4,-0.1 0.450 136.2 -30.4-116.3-151.0 1.0 -0.9 -10.1 73 73 A F S S+ 0 0 189 2,-0.1 2,-0.4 -2,-0.0 -2,-0.1 0.018 118.4 109.7 -65.3 23.9 -1.7 1.2 -11.5 74 74 A G S S- 0 0 16 -2,-0.4 2,-0.4 -4,-0.3 0, 0.0 -0.867 75.5-128.9 -98.2 123.1 -1.3 3.0 -8.0 75 75 A S - 0 0 106 -2,-0.4 2,-0.3 -6,-0.2 3,-0.1 -0.643 42.3-174.9 -81.5 146.3 -0.3 5.7 -5.7 76 76 A L - 0 0 79 -2,-0.4 -7,-2.7 2,-0.3 4,-0.1 -0.748 36.8-167.2-131.9 141.0 1.8 4.0 -3.1 77 77 A M + 0 0 87 -9,-0.4 3,-0.2 -2,-0.3 -10,-0.1 0.643 66.9 120.7 -98.7 -31.7 3.2 5.6 -0.1 78 78 A I + 0 0 91 1,-0.2 2,-0.5 -3,-0.1 -2,-0.3 0.172 59.9 49.5 -45.0 141.8 5.0 2.3 -0.5 79 79 A D S S- 0 0 79 -10,-0.1 2,-0.3 -13,-0.1 -1,-0.2 -0.990 119.8 -48.8 105.5 -89.5 8.3 3.4 -0.7 80 80 A R - 0 0 50 -2,-0.5 2,-0.6 -3,-0.2 -13,-0.3 -0.927 37.5-100.3-153.5 149.3 8.3 5.7 2.3 81 81 A L - 0 0 48 -2,-0.3 -18,-0.1 1,-0.2 2,-0.1 -0.423 48.2-170.4 -57.2 133.4 7.1 8.4 4.5 82 82 A R - 0 0 64 -2,-0.6 2,-0.2 -33,-0.1 -20,-0.2 -0.796 3.0-168.0-141.0 113.7 9.3 11.4 3.5 83 83 A L + 0 0 14 -20,-0.2 -20,-0.2 -18,-0.1 3,-0.0 -0.350 18.7 168.4 -92.2 135.9 9.4 14.6 5.4 84 84 A V - 0 0 21 -22,-0.2 -22,-1.6 -2,-0.2 3,-0.2 -0.986 47.8 -68.8-168.7 150.7 10.5 17.8 5.2 85 85 A P B -D 61 0C 72 0, 0.0 -24,-0.5 0, 0.0 -23,-0.3 -0.060 62.8 -83.1 -49.1 143.6 9.8 20.9 7.3 86 86 A A 0 0 32 -26,-3.7 -25,-0.1 -27,-0.4 -24,-0.1 -0.396 360.0 360.0 -63.6 130.5 6.5 22.6 7.4 87 87 A K 0 0 145 -2,-0.2 -1,-0.1 -3,-0.2 -84,-0.1 -0.505 360.0 360.0 -77.8 360.0 6.6 24.8 4.4