==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RECOMBINATION 16-MAR-09 3GNA . COMPND 2 MOLECULE: V(D)J RECOMBINATION-ACTIVATING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.F.YIN,S.BAILEY,C.A.INNIS,T.A.STEITZ,D.G.SCHATZ . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6428.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 76.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 389 A G 0 0 141 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -80.9 51.9 20.7 -16.2 2 390 A G - 0 0 72 2,-0.0 3,-0.1 3,-0.0 0, 0.0 -0.192 360.0 -65.6 117.7 149.1 50.0 19.1 -13.3 3 391 A R - 0 0 203 -2,-0.1 2,-0.1 1,-0.1 0, 0.0 -0.430 57.9-109.8 -66.4 132.8 47.3 16.4 -13.0 4 392 A P - 0 0 111 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.397 35.5-109.9 -63.3 141.7 43.9 17.5 -14.6 5 393 A R - 0 0 202 -2,-0.1 2,-0.1 -3,-0.1 3,-0.1 -0.554 25.5-140.7 -75.3 133.1 41.1 18.2 -12.1 6 394 A Q - 0 0 88 -2,-0.3 2,-0.1 1,-0.1 5,-0.1 -0.349 42.7 -77.3 -78.9 168.7 38.3 15.7 -12.0 7 395 A H >> - 0 0 126 1,-0.1 3,-1.7 -2,-0.1 4,-0.9 -0.485 41.1-121.1 -70.1 143.5 34.8 17.1 -11.5 8 396 A L G >4 S+ 0 0 45 1,-0.3 3,-0.8 2,-0.2 -1,-0.1 0.869 111.0 54.3 -50.7 -42.8 34.1 18.1 -7.9 9 397 A L G 34 S+ 0 0 134 1,-0.2 -1,-0.3 7,-0.0 4,-0.0 0.608 104.5 54.3 -73.3 -13.6 31.1 15.7 -7.6 10 398 A S G <4 S+ 0 0 74 -3,-1.7 -1,-0.2 2,-0.1 -2,-0.2 0.629 92.6 95.3 -91.4 -17.3 33.2 12.7 -8.7 11 399 A L S << S- 0 0 30 -4,-0.9 2,-0.1 -3,-0.8 -3,-0.0 -0.234 84.9 -97.5 -73.0 160.6 35.9 13.2 -6.0 12 400 A T > - 0 0 92 1,-0.1 4,-3.3 4,-0.0 5,-0.3 -0.374 37.3-109.6 -68.5 156.5 36.1 11.6 -2.6 13 401 A R H > S+ 0 0 214 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.872 122.9 56.2 -56.4 -36.1 34.7 13.7 0.3 14 402 A R H > S+ 0 0 178 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.924 111.7 38.9 -58.4 -51.6 38.4 14.0 1.3 15 403 A A H > S+ 0 0 30 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.867 113.9 55.5 -71.8 -38.3 39.4 15.5 -2.1 16 404 A Q H X S+ 0 0 52 -4,-3.3 4,-1.9 1,-0.2 -2,-0.2 0.907 107.7 50.0 -54.9 -45.3 36.2 17.6 -2.3 17 405 A K H X S+ 0 0 143 -4,-2.2 4,-0.8 -5,-0.3 -1,-0.2 0.850 107.4 54.8 -62.8 -37.9 37.1 19.0 1.0 18 406 A H H < S+ 0 0 126 -4,-1.4 4,-0.2 1,-0.2 -1,-0.2 0.857 109.4 46.8 -66.2 -37.7 40.6 19.8 -0.2 19 407 A R H < S+ 0 0 79 -4,-1.8 3,-0.4 1,-0.2 4,-0.2 0.864 115.5 42.4 -75.9 -36.2 39.4 21.8 -3.2 20 408 A L H >X S+ 0 0 79 -4,-1.9 4,-3.2 1,-0.2 3,-0.8 0.548 83.0 111.6 -84.5 -6.6 36.8 23.9 -1.4 21 409 A R H 3X S+ 0 0 141 -4,-0.8 4,-1.1 1,-0.3 -1,-0.2 0.755 80.5 42.0 -33.8 -47.4 39.3 24.5 1.5 22 410 A E H 3> S+ 0 0 122 -3,-0.4 4,-1.8 -4,-0.2 -1,-0.3 0.862 116.1 46.4 -77.8 -37.5 39.7 28.2 0.7 23 411 A L H <> S+ 0 0 95 -3,-0.8 4,-2.6 -4,-0.2 -2,-0.2 0.852 107.0 60.1 -69.3 -35.0 36.0 28.9 -0.0 24 412 A K H X S+ 0 0 132 -4,-3.2 4,-2.1 1,-0.2 -2,-0.2 0.876 106.5 48.0 -58.0 -37.8 35.1 27.0 3.2 25 413 A I H X S+ 0 0 63 -4,-1.1 4,-3.1 -5,-0.3 -2,-0.2 0.917 110.3 49.3 -68.5 -46.8 37.2 29.6 5.1 26 414 A Q H X S+ 0 0 131 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.876 112.6 49.0 -59.9 -38.2 35.6 32.6 3.3 27 415 A V H X S+ 0 0 25 -4,-2.6 4,-3.0 2,-0.2 5,-0.2 0.914 110.9 49.7 -67.7 -44.6 32.2 31.1 4.2 28 416 A K H X S+ 0 0 97 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.948 111.3 49.6 -55.9 -52.8 33.3 30.6 7.8 29 417 A E H X S+ 0 0 97 -4,-3.1 4,-1.9 1,-0.2 -1,-0.2 0.848 114.0 45.7 -56.4 -38.8 34.5 34.2 8.0 30 418 A F H X>S+ 0 0 99 -4,-2.0 4,-3.1 2,-0.2 5,-0.7 0.957 111.3 50.1 -69.8 -53.0 31.2 35.5 6.5 31 419 A A H X5S+ 0 0 0 -4,-3.0 6,-2.7 1,-0.2 4,-1.6 0.873 113.9 47.4 -53.6 -40.1 29.0 33.4 8.7 32 420 A D H <5S+ 0 0 79 -4,-2.4 4,-0.5 4,-0.3 -1,-0.2 0.937 117.7 39.6 -66.9 -48.9 30.9 34.5 11.8 33 421 A K H <5S+ 0 0 155 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.820 135.3 15.5 -70.9 -34.0 30.9 38.2 10.9 34 422 A E H <5S+ 0 0 125 -4,-3.1 -3,-0.2 -5,-0.1 -2,-0.2 0.667 129.8 35.8-119.1 -23.8 27.3 38.4 9.6 35 423 A E S >< + 0 0 80 -3,-1.0 4,-1.9 -7,-0.6 -1,-0.2 -0.584 7.3 161.6 -89.5 80.3 25.7 29.7 11.3 39 427 A V H > S+ 0 0 49 -2,-1.6 4,-3.5 2,-0.2 5,-0.3 0.924 70.9 54.9 -64.6 -45.8 27.4 28.0 8.4 40 428 A K H > S+ 0 0 148 -3,-0.2 4,-3.0 1,-0.2 5,-0.2 0.934 110.8 43.5 -54.0 -53.7 24.7 25.4 7.9 41 429 A A H > S+ 0 0 35 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.870 116.2 49.7 -62.1 -40.2 21.9 28.0 7.5 42 430 A V H X S+ 0 0 21 -4,-1.9 4,-2.8 2,-0.2 -2,-0.2 0.963 116.0 39.9 -62.1 -55.2 24.1 30.1 5.3 43 431 A C H X S+ 0 0 57 -4,-3.5 4,-2.2 2,-0.2 -2,-0.2 0.842 115.5 53.4 -65.4 -35.1 25.2 27.1 3.0 44 432 A L H X S+ 0 0 42 -4,-3.0 4,-2.8 -5,-0.3 -1,-0.2 0.952 113.8 42.0 -61.6 -48.3 21.6 25.7 3.1 45 433 A T H X S+ 0 0 68 -4,-2.4 4,-3.2 2,-0.2 5,-0.3 0.866 112.2 53.6 -69.3 -40.0 20.2 29.1 1.9 46 434 A L H X S+ 0 0 106 -4,-2.8 4,-2.1 2,-0.2 -1,-0.2 0.941 113.6 44.1 -56.0 -48.9 23.0 29.7 -0.7 47 435 A F H X S+ 0 0 110 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.935 114.5 48.5 -64.0 -48.2 22.2 26.3 -2.1 48 436 A L H X S+ 0 0 21 -4,-2.8 4,-2.6 1,-0.2 5,-0.2 0.933 115.5 43.7 -56.6 -51.0 18.4 26.9 -2.0 49 437 A L H X S+ 0 0 111 -4,-3.2 4,-1.7 1,-0.2 -1,-0.2 0.807 111.6 54.9 -65.6 -30.6 18.6 30.3 -3.6 50 438 A A H X S+ 0 0 50 -4,-2.1 4,-0.7 -5,-0.3 -2,-0.2 0.896 110.9 46.4 -67.5 -38.6 21.1 28.9 -6.1 51 439 A L H ><>S+ 0 0 10 -4,-2.4 5,-2.3 2,-0.2 3,-0.9 0.947 114.5 45.0 -65.8 -51.7 18.5 26.2 -7.0 52 440 A R H ><5S+ 0 0 70 -4,-2.6 3,-1.2 1,-0.3 -1,-0.2 0.753 105.1 61.6 -68.1 -26.5 15.6 28.7 -7.3 53 441 A A H 3<5S+ 0 0 85 -4,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.792 108.8 45.2 -64.5 -28.5 17.7 31.1 -9.3 54 442 A R T <<5S- 0 0 175 -3,-0.9 -1,-0.3 -4,-0.7 -2,-0.2 0.220 120.6-112.6 -96.0 9.0 17.9 28.2 -11.8 55 443 A N T < 5S+ 0 0 126 -3,-1.2 2,-1.0 1,-0.2 3,-0.3 0.763 71.7 140.3 61.6 30.3 14.1 27.5 -11.5 56 444 A E >< + 0 0 50 -5,-2.3 4,-1.9 1,-0.2 -1,-0.2 -0.518 14.1 148.2 -98.3 61.8 14.7 24.2 -9.8 57 445 A H H > + 0 0 84 -2,-1.0 4,-2.7 2,-0.2 -1,-0.2 0.876 63.8 57.3 -66.1 -41.3 11.8 24.8 -7.5 58 446 A R H > S+ 0 0 217 -3,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.916 111.2 42.2 -57.7 -46.6 10.8 21.1 -7.2 59 447 A Q H > S+ 0 0 103 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.895 114.3 52.0 -65.8 -42.0 14.3 20.1 -5.9 60 448 A A H X S+ 0 0 0 -4,-1.9 4,-1.6 1,-0.2 -2,-0.2 0.865 109.1 50.6 -63.2 -37.7 14.4 23.2 -3.6 61 449 A D H X S+ 0 0 87 -4,-2.7 4,-1.1 2,-0.2 -1,-0.2 0.877 109.6 50.5 -65.7 -40.6 11.0 22.2 -2.2 62 450 A E H X S+ 0 0 141 -4,-1.7 4,-1.8 2,-0.2 -2,-0.2 0.870 111.1 47.5 -67.7 -39.1 12.2 18.7 -1.5 63 451 A L H X S+ 0 0 33 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.837 110.7 53.0 -66.5 -34.8 15.3 19.9 0.3 64 452 A E H < S+ 0 0 100 -4,-1.6 -2,-0.2 2,-0.2 -1,-0.2 0.726 107.2 52.0 -73.3 -23.1 13.1 22.3 2.2 65 453 A A H < S+ 0 0 68 -4,-1.1 -2,-0.2 1,-0.1 -1,-0.2 0.864 110.0 48.7 -76.2 -40.1 10.9 19.3 3.2 66 454 A I H < S+ 0 0 126 -4,-1.8 2,-0.7 1,-0.1 -2,-0.2 0.877 107.9 59.9 -63.9 -42.6 14.1 17.4 4.4 67 455 A M < 0 0 58 -4,-2.1 -1,-0.1 1,-0.2 0, 0.0 -0.828 360.0 360.0 -93.4 115.2 15.2 20.5 6.5 68 456 A Q 0 0 209 -2,-0.7 -1,-0.2 0, 0.0 -2,-0.1 0.346 360.0 360.0-157.6 360.0 12.6 21.4 9.1