==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RECOMBINATION 16-MAR-09 3GNB . COMPND 2 MOLECULE: V(D)J RECOMBINATION-ACTIVATING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.F.YIN,S.BAILEY,C.A.INNIS,T.A.STEITZ,D.G.SCHATZ . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6360.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 76.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 60.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 389 A G 0 0 141 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-107.7 52.0 20.7 -16.0 2 390 A G - 0 0 74 2,-0.0 3,-0.1 3,-0.0 0, 0.0 -0.241 360.0 -67.8 124.2 146.3 50.0 19.1 -13.3 3 391 A R - 0 0 204 -2,-0.1 2,-0.1 1,-0.1 0, 0.0 -0.402 58.3-110.5 -62.4 132.9 47.4 16.4 -13.0 4 392 A P - 0 0 111 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.401 35.1-109.7 -64.4 145.6 44.1 17.5 -14.5 5 393 A R - 0 0 206 -2,-0.1 2,-0.1 -3,-0.1 3,-0.1 -0.550 24.6-140.5 -78.2 138.7 41.3 18.1 -12.1 6 394 A Q - 0 0 91 -2,-0.2 2,-0.2 1,-0.1 5,-0.1 -0.337 42.8 -76.6 -82.6 172.8 38.3 15.7 -11.9 7 395 A H >> - 0 0 127 1,-0.1 3,-1.8 -2,-0.1 4,-0.7 -0.547 40.5-121.9 -73.8 143.5 34.8 17.1 -11.4 8 396 A L G >4 S+ 0 0 43 1,-0.3 3,-1.0 -2,-0.2 -1,-0.1 0.871 111.0 53.7 -50.5 -43.5 34.1 18.2 -7.8 9 397 A L G 34 S+ 0 0 136 1,-0.2 -1,-0.3 7,-0.0 4,-0.1 0.575 104.8 54.6 -73.8 -10.8 31.1 15.8 -7.5 10 398 A S G <4 S+ 0 0 71 -3,-1.8 -1,-0.2 2,-0.1 -2,-0.2 0.564 92.0 96.1 -94.7 -13.1 33.2 12.8 -8.7 11 399 A L S << S- 0 0 32 -3,-1.0 2,-0.1 -4,-0.7 -3,-0.0 -0.294 84.9 -96.6 -77.2 159.9 35.8 13.2 -6.0 12 400 A T > - 0 0 92 1,-0.1 4,-3.3 -2,-0.0 5,-0.2 -0.400 38.5-110.8 -65.9 153.5 36.1 11.6 -2.6 13 401 A R H > S+ 0 0 211 1,-0.2 4,-2.7 2,-0.2 5,-0.1 0.873 122.7 56.8 -55.9 -37.2 34.7 13.7 0.2 14 402 A R H > S+ 0 0 183 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.956 111.3 38.9 -52.3 -59.8 38.3 14.0 1.3 15 403 A A H > S+ 0 0 29 2,-0.2 4,-1.4 1,-0.2 -2,-0.2 0.841 114.7 54.7 -65.5 -36.9 39.5 15.4 -2.1 16 404 A Q H X S+ 0 0 50 -4,-3.3 4,-2.1 1,-0.2 3,-0.4 0.939 107.3 50.7 -57.3 -49.7 36.3 17.5 -2.3 17 405 A K H X S+ 0 0 136 -4,-2.7 4,-1.3 -5,-0.2 -2,-0.2 0.837 106.9 55.4 -56.7 -38.7 37.0 19.0 1.1 18 406 A H H < S+ 0 0 124 -4,-1.5 4,-0.3 2,-0.2 -1,-0.2 0.820 109.5 45.5 -67.4 -34.8 40.6 19.9 -0.1 19 407 A R H < S+ 0 0 78 -4,-1.4 3,-0.5 -3,-0.4 4,-0.2 0.887 116.7 41.7 -78.4 -40.6 39.4 21.9 -3.2 20 408 A L H >X S+ 0 0 81 -4,-2.1 4,-3.1 1,-0.2 3,-1.8 0.661 86.2 103.8 -79.7 -17.2 36.7 23.9 -1.4 21 409 A R H 3X S+ 0 0 128 -4,-1.3 4,-1.7 1,-0.3 -1,-0.2 0.763 79.3 48.9 -29.4 -51.2 39.0 24.5 1.6 22 410 A E H 3> S+ 0 0 118 -3,-0.5 4,-1.1 -4,-0.3 -1,-0.3 0.825 117.2 40.7 -68.9 -32.5 39.8 28.1 0.6 23 411 A L H <> S+ 0 0 91 -3,-1.8 4,-2.8 -4,-0.2 5,-0.2 0.828 106.8 63.1 -80.9 -37.2 36.1 29.0 0.1 24 412 A K H X S+ 0 0 128 -4,-3.1 4,-2.4 1,-0.2 -2,-0.2 0.899 105.1 49.5 -51.2 -41.8 35.1 27.0 3.2 25 413 A I H X S+ 0 0 70 -4,-1.7 4,-2.9 -5,-0.3 -1,-0.2 0.920 108.8 50.0 -63.4 -48.0 37.2 29.6 5.0 26 414 A Q H X S+ 0 0 127 -4,-1.1 4,-2.0 2,-0.2 -2,-0.2 0.880 112.2 48.6 -58.6 -40.1 35.6 32.6 3.3 27 415 A V H X S+ 0 0 26 -4,-2.8 4,-3.5 2,-0.2 5,-0.2 0.931 110.5 51.0 -64.5 -47.7 32.2 31.1 4.2 28 416 A K H X S+ 0 0 97 -4,-2.4 4,-2.6 -5,-0.2 -2,-0.2 0.957 110.9 48.7 -51.7 -56.4 33.2 30.6 7.8 29 417 A E H X S+ 0 0 93 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.859 115.0 44.7 -52.9 -42.5 34.5 34.2 8.0 30 418 A F H X>S+ 0 0 102 -4,-2.0 4,-3.0 2,-0.2 5,-0.7 0.958 111.1 52.1 -68.2 -52.5 31.2 35.5 6.5 31 419 A A H X5S+ 0 0 0 -4,-3.5 6,-2.9 1,-0.2 4,-1.6 0.879 115.0 44.4 -49.9 -43.1 29.0 33.3 8.7 32 420 A D H X5S+ 0 0 74 -4,-2.6 4,-0.6 4,-0.3 -1,-0.2 0.953 117.7 41.5 -67.6 -52.9 30.9 34.5 11.8 33 421 A K H <5S+ 0 0 153 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.773 134.6 15.0 -68.3 -29.2 30.9 38.2 10.9 34 422 A E H <5S+ 0 0 125 -4,-3.0 -3,-0.2 -5,-0.2 -2,-0.2 0.674 130.0 35.6-122.4 -24.9 27.3 38.4 9.5 35 423 A E H >< + 0 0 79 -3,-1.1 4,-1.8 -7,-0.7 -1,-0.2 -0.643 7.5 162.1 -94.0 79.5 25.7 29.8 11.3 39 427 A V H > S+ 0 0 50 -2,-1.4 4,-3.3 2,-0.2 5,-0.4 0.948 70.5 55.9 -61.7 -51.1 27.4 28.0 8.4 40 428 A K H > S+ 0 0 147 1,-0.2 4,-3.0 -3,-0.2 5,-0.2 0.920 110.5 42.9 -47.0 -58.3 24.7 25.4 7.9 41 429 A A H > S+ 0 0 36 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.854 116.2 50.6 -59.6 -37.7 21.9 28.0 7.5 42 430 A V H X S+ 0 0 18 -4,-1.8 4,-3.0 2,-0.2 -2,-0.2 0.977 115.3 39.4 -64.0 -57.8 24.2 30.1 5.2 43 431 A C H X S+ 0 0 57 -4,-3.3 4,-2.3 2,-0.2 -2,-0.2 0.843 116.0 53.5 -61.8 -36.9 25.2 27.2 2.9 44 432 A L H X S+ 0 0 39 -4,-3.0 4,-3.0 -5,-0.4 -1,-0.2 0.971 113.8 41.5 -60.7 -53.5 21.7 25.8 3.0 45 433 A T H X S+ 0 0 69 -4,-2.4 4,-3.2 2,-0.2 5,-0.3 0.871 112.2 54.8 -63.2 -41.0 20.2 29.1 1.9 46 434 A L H X S+ 0 0 107 -4,-3.0 4,-1.9 2,-0.2 -1,-0.2 0.933 113.7 42.6 -54.9 -47.7 23.0 29.7 -0.6 47 435 A F H X S+ 0 0 108 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.922 114.8 48.7 -66.6 -47.7 22.2 26.4 -2.2 48 436 A L H X S+ 0 0 22 -4,-3.0 4,-2.7 2,-0.2 5,-0.2 0.950 115.4 44.1 -57.8 -51.7 18.4 26.9 -2.0 49 437 A L H X S+ 0 0 112 -4,-3.2 4,-1.9 1,-0.2 -1,-0.2 0.840 111.9 54.8 -61.9 -34.2 18.6 30.3 -3.6 50 438 A A H < S+ 0 0 48 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.855 111.0 45.5 -65.4 -36.6 21.1 28.9 -6.1 51 439 A L H ><>S+ 0 0 10 -4,-2.2 5,-2.3 2,-0.2 3,-1.2 0.923 114.5 45.9 -70.8 -48.2 18.5 26.2 -7.0 52 440 A R H ><5S+ 0 0 65 -4,-2.7 3,-1.4 1,-0.3 -2,-0.2 0.782 103.5 63.1 -68.5 -28.2 15.6 28.7 -7.2 53 441 A A T 3<5S+ 0 0 86 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.671 109.4 43.5 -65.4 -16.8 17.7 31.1 -9.3 54 442 A R T < 5S- 0 0 175 -3,-1.2 -1,-0.3 -4,-0.2 -2,-0.2 0.222 118.8-113.9-109.3 9.1 17.7 28.2 -11.7 55 443 A N T < 5S+ 0 0 125 -3,-1.4 2,-0.6 1,-0.2 3,-0.3 0.839 70.7 140.6 56.2 37.8 14.0 27.4 -11.4 56 444 A E >< + 0 0 52 -5,-2.3 4,-2.2 1,-0.2 -1,-0.2 -0.505 16.3 148.8-101.3 58.6 14.7 24.1 -9.8 57 445 A H H > + 0 0 83 -2,-0.6 4,-2.6 1,-0.2 -1,-0.2 0.792 60.7 60.0 -65.0 -32.2 11.8 24.7 -7.5 58 446 A R H > S+ 0 0 207 -3,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.932 111.1 38.9 -65.2 -48.1 10.8 21.0 -7.1 59 447 A Q H > S+ 0 0 101 2,-0.2 4,-3.0 1,-0.2 5,-0.3 0.911 114.7 54.5 -67.3 -45.5 14.2 20.0 -5.7 60 448 A A H X S+ 0 0 0 -4,-2.2 4,-1.6 1,-0.2 -2,-0.2 0.890 110.2 47.5 -54.2 -43.1 14.4 23.2 -3.7 61 449 A D H X S+ 0 0 88 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.894 111.1 51.1 -64.4 -42.6 11.0 22.3 -2.2 62 450 A E H X S+ 0 0 126 -4,-2.0 4,-1.6 2,-0.2 -2,-0.2 0.895 110.8 47.0 -64.7 -42.0 12.2 18.7 -1.5 63 451 A L H X S+ 0 0 34 -4,-3.0 4,-1.6 1,-0.2 -1,-0.2 0.844 112.0 52.0 -65.1 -34.3 15.3 19.9 0.3 64 452 A E H X S+ 0 0 104 -4,-1.6 4,-1.1 -5,-0.3 -2,-0.2 0.821 107.3 52.4 -70.6 -32.6 13.1 22.3 2.2 65 453 A A H < S+ 0 0 68 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.827 110.9 48.7 -68.9 -34.6 10.8 19.3 3.1 66 454 A I H < S+ 0 0 121 -4,-1.6 -2,-0.2 -5,-0.1 -1,-0.2 0.840 110.4 50.3 -70.8 -34.5 13.9 17.5 4.4 67 455 A M H < 0 0 59 -4,-1.6 -2,-0.2 1,-0.1 -3,-0.1 0.836 360.0 360.0 -86.9 -38.8 15.3 20.3 6.6 68 456 A Q < 0 0 201 -4,-1.1 -1,-0.1 0, 0.0 -4,-0.1 0.554 360.0 360.0 15.9 360.0 12.7 21.8 9.0