==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 16-APR-99 1GOD . COMPND 2 MOLECULE: PROTEIN (PHOSPHOLIPASE A2); . SOURCE 2 ORGANISM_SCIENTIFIC: CERROPHIDION GODMANI; . AUTHOR R.K.ARNI,M.R.M.FONTES,C.BARBERATO,J.M.GUTIERREZ,C.DIAZ- . 121 1 7 7 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7081.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 57.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 12.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 33.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S >> 0 0 9 0, 0.0 4,-2.1 0, 0.0 3,-1.4 0.000 360.0 360.0 360.0 143.3 20.5 43.6 12.1 2 2 A M H 3> + 0 0 63 58,-1.8 4,-2.8 1,-0.3 5,-0.2 0.841 360.0 58.8 -45.6 -42.5 18.3 41.8 14.6 3 3 A Y H 3> S+ 0 0 154 57,-0.3 4,-1.8 2,-0.2 -1,-0.3 0.888 109.2 45.2 -57.5 -38.4 18.2 44.9 16.8 4 4 A Q H X> S+ 0 0 26 -3,-1.4 4,-3.2 2,-0.2 3,-0.6 0.982 114.5 45.2 -68.0 -57.0 16.7 46.7 13.8 5 5 A L H 3X S+ 0 0 29 -4,-2.1 4,-2.7 1,-0.3 -2,-0.2 0.820 113.0 56.3 -52.8 -30.4 14.2 43.9 12.9 6 6 A W H 3X S+ 0 0 71 -4,-2.8 4,-1.2 -5,-0.4 11,-0.3 0.859 108.1 43.4 -71.5 -39.6 13.6 43.9 16.7 7 7 A K H S+ 0 0 8 -4,-2.7 4,-2.7 2,-0.2 5,-0.9 0.818 112.3 55.6 -56.9 -32.0 8.6 44.2 15.1 10 10 A L H X5S+ 0 0 62 -4,-1.2 4,-2.5 -3,-0.2 5,-0.2 0.999 109.8 39.7 -65.3 -67.1 8.1 46.2 18.2 11 11 A Q H <5S+ 0 0 76 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.710 120.9 51.2 -57.0 -16.8 6.6 49.4 16.7 12 12 A E H <5S+ 0 0 15 -4,-1.4 -2,-0.2 -5,-0.3 -1,-0.2 0.962 130.8 8.3 -84.2 -61.3 4.6 47.1 14.5 13 13 A T H <5S- 0 0 20 -4,-2.7 -3,-0.2 2,-0.2 -2,-0.2 0.749 94.7-123.8 -90.7 -30.3 3.0 44.5 16.8 14 15 A G S < - 0 0 76 -2,-0.3 4,-2.5 1,-0.2 5,-0.4 -0.713 32.2-146.7 -83.1 116.0 9.2 42.0 22.4 17 18 A A H >>S+ 0 0 10 -2,-0.7 4,-3.4 -11,-0.3 5,-1.7 0.933 90.9 40.7 -44.1 -80.0 10.6 39.9 19.5 18 19 A V H 45S+ 0 0 98 3,-0.2 5,-0.4 1,-0.2 4,-0.3 0.871 118.2 49.3 -38.5 -57.3 12.8 37.3 21.3 19 20 A P H 45S+ 0 0 66 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.930 125.4 22.8 -51.4 -58.8 10.2 36.9 24.1 20 21 A S H <5S+ 0 0 14 -4,-2.5 -2,-0.2 -3,-0.1 -3,-0.2 0.621 142.8 16.4 -90.5 -12.9 7.0 36.3 22.1 21 22 A Y T ><5S+ 0 0 9 -4,-3.4 3,-2.6 -5,-0.4 -3,-0.2 0.626 95.5 91.5-127.3 -33.8 8.5 35.1 18.8 22 23 A G T 3 - 0 0 0 -3,-2.6 5,-0.7 85,-0.2 4,-0.5 -0.187 61.7 -33.0 -64.7 148.8 7.5 30.5 18.4 25 26 A G T 5S- 0 0 6 79,-0.2 85,-0.3 1,-0.2 4,-0.2 0.135 98.6 -52.8 40.6-150.9 6.1 27.6 16.4 26 27 A a T 5S+ 0 0 3 9,-0.1 -1,-0.2 8,-0.1 9,-0.1 0.581 132.9 34.3 -94.8 -15.4 8.4 25.3 14.4 27 28 A N T 5S+ 0 0 0 6,-0.2 5,-0.5 -3,-0.2 4,-0.3 0.825 97.3 73.0-108.1 -44.4 10.2 27.9 12.3 28 29 A b T 5S+ 0 0 18 -4,-0.5 -3,-0.1 13,-0.1 -4,-0.1 0.743 81.0 94.1 -44.3 -33.9 10.7 31.1 14.4 29 30 A G S S- 0 0 27 1,-0.1 4,-3.0 66,-0.0 5,-0.3 -0.988 84.8 -51.4 179.4 179.4 -0.0 28.7 11.8 39 40 A A H > S+ 0 0 33 -2,-0.3 4,-2.2 1,-0.2 -1,-0.1 0.852 131.7 41.4 -34.7 -57.8 -0.1 32.2 10.2 40 41 A T H > S+ 0 0 0 59,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.935 112.6 53.6 -62.1 -47.5 2.6 33.5 12.5 41 42 A D H > S+ 0 0 0 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.902 109.2 50.4 -54.7 -42.4 4.7 30.3 12.3 42 43 A R H X S+ 0 0 140 -4,-3.0 4,-2.8 2,-0.2 5,-0.3 0.948 102.1 61.2 -60.7 -49.6 4.6 30.6 8.5 43 44 A c H X S+ 0 0 5 -4,-2.2 4,-2.9 -5,-0.3 5,-0.2 0.917 106.5 45.8 -40.7 -56.4 5.7 34.2 8.6 44 45 A b H X S+ 0 0 15 -4,-1.9 4,-1.2 1,-0.2 -1,-0.3 0.919 110.0 55.1 -56.1 -45.5 9.0 33.1 10.3 45 46 A F H >X S+ 0 0 19 -4,-1.9 4,-1.5 1,-0.2 3,-0.8 0.934 112.3 41.6 -53.5 -52.1 9.4 30.3 7.8 46 47 A V H 3X S+ 0 0 86 -4,-2.8 4,-2.4 1,-0.3 -1,-0.2 0.880 107.6 60.7 -65.5 -38.5 9.1 32.7 4.8 47 48 A H H 3X S+ 0 0 26 -4,-2.9 4,-1.3 -5,-0.3 -1,-0.3 0.761 104.3 54.2 -61.2 -20.5 11.3 35.3 6.6 48 49 A K H < S+ 0 0 42 -4,-2.4 3,-1.4 1,-0.3 4,-0.4 0.927 104.1 49.7 -54.4 -49.6 14.0 35.5 2.2 51 52 A Y H >< S+ 0 0 46 -4,-1.3 3,-1.0 1,-0.3 -1,-0.3 0.760 96.0 74.1 -61.2 -25.6 17.2 35.9 4.2 52 53 A K T 3< S+ 0 0 118 -4,-1.2 -1,-0.3 -3,-0.4 -2,-0.2 0.282 87.3 64.9 -72.5 12.4 18.6 33.1 2.1 53 57 A K T < S+ 0 0 130 -3,-1.4 2,-1.4 1,-0.1 -1,-0.2 0.736 77.4 84.8-103.7 -31.9 18.8 35.6 -0.7 54 58 A L < + 0 0 15 -3,-1.0 3,-0.3 -4,-0.4 -1,-0.1 -0.590 44.3 159.6 -77.2 93.9 21.4 37.9 0.7 55 59 A T S S+ 0 0 124 -2,-1.4 -1,-0.2 1,-0.2 3,-0.1 0.110 72.9 48.6-100.6 18.6 24.7 36.2 -0.2 56 60 A D S S+ 0 0 147 1,-0.3 2,-0.3 25,-0.0 -1,-0.2 0.237 110.2 42.0-139.8 11.1 26.7 39.4 0.2 57 61 A f S S- 0 0 18 -3,-0.3 -1,-0.3 24,-0.1 -3,-0.0 -0.923 73.6-123.2-162.6 134.3 25.6 40.7 3.6 58 67 A S > - 0 0 48 -2,-0.3 4,-1.7 1,-0.1 -3,-0.1 -0.701 12.4-157.3 -82.8 120.6 24.9 39.2 7.0 59 68 A P T 4 S+ 0 0 30 0, 0.0 -1,-0.1 0, 0.0 -57,-0.1 0.621 85.2 70.2 -70.4 -13.2 21.4 40.1 8.2 60 69 A K T 4 S- 0 0 124 -59,-0.2 -58,-1.8 1,-0.1 -57,-0.3 0.992 121.1 -0.3 -68.3 -63.8 22.5 39.5 11.8 61 70 A T T 4 S+ 0 0 94 -60,-0.2 2,-0.2 -59,-0.1 -1,-0.1 0.677 100.2 105.4-103.9 -22.9 24.8 42.4 12.4 62 71 A D < - 0 0 65 -4,-1.7 2,-0.5 1,-0.1 -5,-0.0 -0.451 61.4-146.3 -64.4 124.0 24.8 44.4 9.1 63 72 A S - 0 0 85 -2,-0.2 2,-0.1 -59,-0.0 19,-0.1 -0.844 14.0-165.1-100.0 125.0 22.7 47.5 9.7 64 73 A Y - 0 0 10 -2,-0.5 2,-0.5 18,-0.1 15,-0.1 -0.380 24.0-102.9 -95.8 176.9 20.7 48.9 6.8 65 74 A S + 0 0 54 13,-0.3 2,-0.3 -2,-0.1 21,-0.1 -0.896 51.7 138.3-109.4 133.2 19.0 52.2 6.4 66 75 A Y - 0 0 40 -2,-0.5 9,-0.2 11,-0.0 2,-0.2 -0.971 23.6-164.3-160.7 168.5 15.3 52.7 6.8 67 76 A S E -A 74 0A 73 7,-1.9 7,-2.2 -2,-0.3 2,-0.4 -0.787 28.5-104.2-145.3-171.9 12.7 55.1 8.2 68 77 A W E -A 73 0A 76 5,-0.2 2,-1.9 -2,-0.2 3,-0.4 -0.816 20.5-159.2-128.6 91.1 9.0 55.3 9.2 69 78 A K S S- 0 0 154 3,-2.1 3,-0.2 -2,-0.4 4,-0.0 -0.512 78.4 -45.2 -71.4 88.2 6.9 57.3 6.8 70 79 A D S S- 0 0 125 -2,-1.9 -1,-0.2 1,-0.2 3,-0.1 0.958 127.5 -24.1 46.9 81.0 4.0 58.0 9.2 71 80 A K S S+ 0 0 139 -3,-0.4 2,-0.5 1,-0.1 -1,-0.2 0.449 121.6 104.6 69.8 1.5 3.5 54.6 10.8 72 81 A T - 0 0 73 -3,-0.2 -3,-2.1 2,-0.0 -1,-0.1 -0.956 69.7-128.4-122.8 129.1 5.0 52.9 7.8 73 82 A I E -A 68 0A 2 -2,-0.5 2,-0.3 -5,-0.3 -5,-0.2 -0.406 27.8-177.8 -67.0 143.0 8.4 51.2 7.4 74 83 A V E -A 67 0A 57 -7,-2.2 -7,-1.9 1,-0.1 13,-0.1 -0.828 7.8-175.1-150.0 104.3 10.3 52.4 4.4 75 84 A g + 0 0 11 -2,-0.3 -1,-0.1 -9,-0.2 -8,-0.1 0.903 25.7 139.3 -63.2-103.7 13.7 51.0 3.5 76 85 A G + 0 0 51 1,-0.1 2,-0.2 -10,-0.1 -2,-0.0 0.943 33.7 120.3 55.2 97.5 15.4 52.7 0.5 77 86 A D - 0 0 37 2,-0.3 -1,-0.1 1,-0.0 2,-0.1 -0.842 57.9 -40.7-160.8-163.4 19.1 53.2 1.1 78 87 A N S S+ 0 0 130 -2,-0.2 -13,-0.3 4,-0.1 4,-0.1 -0.384 96.6 20.3 -77.7 158.0 22.6 52.5 0.1 79 88 A N S S- 0 0 106 3,-0.1 -2,-0.3 -2,-0.1 -15,-0.0 0.127 71.9-119.7 69.3 171.5 23.8 49.2 -1.2 80 89 A P S >> S+ 0 0 86 0, 0.0 4,-2.0 0, 0.0 3,-0.7 0.731 103.8 54.5-109.2 -49.4 21.5 46.4 -2.6 81 90 A f H 3> S+ 0 0 9 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.917 105.7 55.3 -54.7 -42.0 22.1 43.4 -0.2 82 92 A L H 3> S+ 0 0 26 1,-0.2 4,-3.0 2,-0.2 -1,-0.3 0.856 107.4 53.7 -59.7 -31.0 21.2 45.6 2.8 83 93 A Q H <> S+ 0 0 45 -3,-0.7 4,-3.3 2,-0.2 5,-0.3 0.947 103.9 49.9 -69.2 -52.5 18.0 46.4 0.9 84 94 A E H X S+ 0 0 91 -4,-2.0 4,-2.5 1,-0.2 5,-0.2 0.967 116.2 46.9 -48.6 -52.7 16.9 42.8 0.4 85 95 A M H X S+ 0 0 0 -4,-2.3 4,-2.5 1,-0.3 -2,-0.2 0.933 112.3 47.3 -52.9 -54.8 17.6 42.4 4.1 86 96 A g H X S+ 0 0 0 -4,-3.0 4,-1.4 1,-0.2 -1,-0.3 0.828 114.2 49.7 -58.7 -31.8 15.7 45.5 5.0 87 97 A E H X S+ 0 0 105 -4,-3.3 4,-1.4 2,-0.2 -1,-0.2 0.819 108.5 50.3 -77.7 -34.1 12.8 44.4 2.8 88 98 A e H >X S+ 0 0 5 -4,-2.5 4,-1.4 -5,-0.3 3,-0.5 0.961 109.1 53.3 -66.0 -51.4 12.6 40.9 4.2 89 99 A D H 3X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.3 3,-0.5 0.878 108.5 49.2 -50.1 -45.0 12.5 42.4 7.8 90 100 A K H 3X S+ 0 0 63 -4,-1.4 4,-1.6 1,-0.2 -1,-0.3 0.846 108.2 53.7 -67.0 -31.4 9.6 44.7 6.8 91 101 A A H X S+ 0 0 38 -4,-0.5 4,-1.4 2,-0.2 3,-0.7 0.979 111.3 45.4 -73.5 -63.2 3.3 39.5 8.6 96 106 A L H 3< S+ 0 0 3 -4,-2.9 -2,-0.2 1,-0.3 -3,-0.2 0.812 117.1 50.9 -48.2 -33.5 3.6 38.8 12.3 97 107 A R H >< S+ 0 0 117 -4,-0.7 3,-1.1 -5,-0.4 -1,-0.3 0.843 101.0 58.3 -77.9 -35.3 1.4 41.9 12.6 98 108 A E H << S+ 0 0 134 -4,-1.3 3,-0.2 -3,-0.7 -2,-0.2 0.752 112.3 42.6 -68.7 -20.0 -1.3 40.8 10.2 99 109 A N T >< + 0 0 28 -4,-1.4 3,-1.2 1,-0.2 4,-0.3 -0.206 68.4 123.6-119.1 44.6 -1.9 37.7 12.3 100 110 A L G X S+ 0 0 62 -3,-1.1 3,-2.6 1,-0.3 -1,-0.2 0.954 73.7 62.1 -65.3 -45.2 -1.8 39.0 15.9 101 111 A D G 3 S+ 0 0 145 1,-0.3 -1,-0.3 -4,-0.2 -2,-0.1 0.262 104.7 50.4 -62.6 14.2 -5.3 37.6 16.4 102 112 A T G < S+ 0 0 54 -3,-1.2 -1,-0.3 -64,-0.0 -2,-0.2 0.396 73.8 128.2-131.0 -6.5 -3.8 34.2 15.7 103 113 A Y < - 0 0 39 -3,-2.6 2,-0.5 -4,-0.3 -3,-0.0 -0.294 46.2-154.8 -53.5 134.5 -0.9 34.3 18.1 104 114 A N >> - 0 0 48 1,-0.1 3,-2.7 -66,-0.0 4,-1.0 -0.949 16.5-154.8-124.3 113.6 -1.1 31.1 20.1 105 115 A K T 34 S+ 0 0 152 -2,-0.5 4,-0.3 1,-0.3 -1,-0.1 0.659 94.7 67.3 -57.5 -17.0 0.5 31.0 23.6 106 116 A N T 34 S+ 0 0 121 1,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.641 103.1 44.3 -79.9 -13.4 0.8 27.3 23.2 107 117 A Y T X4 S+ 0 0 48 -3,-2.7 3,-1.2 1,-0.1 -2,-0.2 0.681 84.1 98.5 -98.2 -23.8 3.4 27.8 20.4 108 118 A K T 3< S+ 0 0 84 -4,-1.0 -85,-0.4 1,-0.3 2,-0.3 0.740 105.0 14.0 -30.2 -47.9 5.3 30.5 22.3 109 119 A I T 3 S- 0 0 115 -4,-0.3 -1,-0.3 -3,-0.1 -85,-0.2 -0.719 90.7-172.7-135.6 78.6 7.9 27.9 23.5 110 120 A Y < - 0 0 43 -87,-1.2 -3,-0.1 -3,-1.2 -81,-0.0 -0.652 20.5-132.5 -82.1 130.5 7.1 24.9 21.2 111 121 A P - 0 0 81 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.904 21.4-130.5 -40.1 -99.3 9.0 21.6 22.0 112 122 A K S > S+ 0 0 133 3,-0.0 3,-2.7 -80,-0.0 -2,-0.0 -0.228 96.1 67.6 168.4 -55.6 10.4 20.2 18.7 113 123 A P T 3 S+ 0 0 127 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.645 93.5 71.2 -61.2 -7.5 9.4 16.5 18.5 114 125 A L T 3 S+ 0 0 91 2,-0.1 2,-0.1 -88,-0.0 -88,-0.1 0.306 91.2 77.1 -88.7 7.4 6.0 18.2 18.1 115 126 A a < - 0 0 34 -3,-2.7 2,-0.2 -89,-0.1 -81,-0.1 -0.264 65.9-145.7-103.8-167.5 7.0 19.4 14.6 116 127 A K - 0 0 85 -81,-0.1 -81,-0.1 -2,-0.1 2,-0.1 -0.832 44.0 -44.9-147.2-176.7 7.3 17.8 11.2 117 129 A K - 0 0 157 -2,-0.2 -82,-0.3 -83,-0.2 -83,-0.2 -0.369 64.5-116.6 -60.2 128.3 9.4 17.9 7.9 118 130 A A - 0 0 30 -85,-0.3 -83,-0.1 -84,-0.3 -1,-0.1 -0.382 28.3-110.0 -68.6 143.7 10.0 21.5 6.9 119 131 A D - 0 0 63 -85,-0.2 2,-0.3 1,-0.1 -1,-0.1 -0.321 39.2 -98.1 -69.1 157.4 8.5 22.6 3.6 120 132 A A 0 0 79 1,-0.1 -1,-0.1 -2,-0.0 0, 0.0 -0.600 360.0 360.0 -79.4 136.1 10.9 23.3 0.7 121 133 A d 0 0 111 -2,-0.3 -1,-0.1 -3,-0.1 -72,-0.1 0.975 360.0 360.0 -51.1 360.0 11.7 27.0 0.4