==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 12-APR-06 2GOF . COMPND 2 MOLECULE: VPU PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR S.H.PARK,A.A.DE ANGELIS,A.A.NEVZOROV,C.H.WU,S.J.OPELLA . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1057.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 82.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 76.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A I > 0 0 105 0, 0.0 4,-2.9 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -36.7 0.3 3.5 -1.3 2 9 A V H > + 0 0 65 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.972 360.0 42.9 -56.5 -59.9 4.1 3.5 -0.8 3 10 A A H > S+ 0 0 72 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.800 116.8 51.0 -57.3 -30.0 4.7 0.5 -3.1 4 11 A L H > S+ 0 0 50 2,-0.2 4,-2.5 3,-0.2 5,-0.3 0.861 108.3 50.5 -75.5 -38.6 2.2 2.0 -5.5 5 12 A V H X S+ 0 0 48 -4,-2.9 4,-3.5 3,-0.2 5,-0.2 0.906 114.7 43.8 -65.7 -43.7 4.0 5.4 -5.4 6 13 A V H X S+ 0 0 51 -4,-2.5 4,-3.1 2,-0.2 5,-0.3 0.973 119.2 40.7 -65.5 -57.3 7.4 3.8 -6.2 7 14 A A H X S+ 0 0 56 -4,-2.0 4,-2.0 -5,-0.2 -2,-0.2 0.894 124.2 40.8 -58.6 -42.5 6.2 1.4 -8.8 8 15 A I H X S+ 0 0 47 -4,-2.5 4,-2.2 -5,-0.2 -2,-0.2 0.929 114.3 51.5 -71.7 -48.2 4.0 4.1 -10.3 9 16 A I H X S+ 0 0 49 -4,-3.5 4,-2.3 -5,-0.3 -2,-0.2 0.932 114.2 43.9 -54.0 -51.0 6.5 6.9 -9.8 10 17 A I H X S+ 0 0 45 -4,-3.1 4,-2.8 2,-0.2 5,-0.4 0.953 108.7 56.6 -59.8 -53.4 9.2 4.8 -11.7 11 18 A A H X S+ 0 0 59 -4,-2.0 4,-0.8 -5,-0.3 -1,-0.2 0.868 111.6 44.8 -46.0 -43.2 6.8 3.7 -14.4 12 19 A I H X S+ 0 0 52 -4,-2.2 4,-1.4 2,-0.2 3,-0.3 0.904 111.5 53.0 -69.2 -43.6 6.2 7.4 -15.1 13 20 A V H >X S+ 0 0 44 -4,-2.3 4,-2.4 1,-0.2 3,-1.5 0.969 103.9 53.7 -55.5 -60.0 9.9 8.3 -14.9 14 21 A V H 3< S+ 0 0 68 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.794 108.6 53.7 -46.0 -31.3 10.9 5.6 -17.4 15 22 A W H 3< S+ 0 0 69 -4,-0.8 -1,-0.3 -5,-0.4 -2,-0.2 0.843 108.6 47.9 -73.5 -35.6 8.3 7.3 -19.7 16 23 A S H << 0 0 69 -3,-1.5 -2,-0.2 -4,-1.4 -1,-0.1 0.949 360.0 360.0 -69.5 -51.9 9.9 10.7 -19.2 17 24 A I < 0 0 108 -4,-2.4 -2,-0.2 -5,-0.1 -3,-0.2 0.966 360.0 360.0 -62.6 360.0 13.5 9.6 -19.9