==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 24-MAR-09 3GQU . COMPND 2 MOLECULE: NOP5P PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR F.E.REYES,J.W.HARDIN,R.T.BATEY . 117 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6263.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 72.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 60 51.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 241 A G 0 0 103 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.4 -6.1 6.7 -0.1 2 242 A G >> - 0 0 45 1,-0.1 4,-2.0 4,-0.0 3,-0.6 -0.412 360.0-103.1 -80.1 161.0 -3.5 9.3 -0.6 3 243 A L H 3> S+ 0 0 135 1,-0.2 4,-1.6 2,-0.2 3,-0.2 0.919 122.1 48.9 -42.5 -59.3 0.3 8.8 -1.2 4 244 A E H 3> S+ 0 0 162 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.784 106.7 54.9 -53.3 -37.1 1.1 9.7 2.4 5 245 A D H <> S+ 0 0 54 -3,-0.6 4,-2.5 1,-0.2 -1,-0.2 0.899 106.8 52.9 -68.7 -39.4 -1.5 7.3 3.8 6 246 A Y H X S+ 0 0 154 -4,-2.0 4,-2.8 2,-0.2 -2,-0.2 0.882 112.3 43.5 -57.2 -42.8 0.1 4.5 1.8 7 247 A I H X S+ 0 0 63 -4,-1.6 4,-2.9 2,-0.2 5,-0.2 0.895 110.5 54.3 -78.3 -37.2 3.5 5.2 3.3 8 248 A D H X S+ 0 0 73 -4,-2.4 4,-1.1 2,-0.2 -2,-0.2 0.941 113.8 43.3 -58.9 -47.0 2.2 5.7 6.8 9 249 A K H >X S+ 0 0 47 -4,-2.5 4,-0.8 1,-0.2 3,-0.7 0.944 111.9 53.5 -62.9 -49.6 0.6 2.3 6.5 10 250 A A H >X S+ 0 0 41 -4,-2.8 4,-3.3 1,-0.3 3,-1.3 0.884 104.0 55.3 -52.6 -44.0 3.7 0.7 4.8 11 251 A M H 3X S+ 0 0 13 -4,-2.9 4,-2.2 1,-0.3 -1,-0.3 0.818 98.7 63.0 -62.9 -30.6 5.9 1.9 7.7 12 252 A D H << S+ 0 0 84 -4,-1.1 -1,-0.3 -3,-0.7 -2,-0.2 0.801 115.4 32.4 -57.1 -30.4 3.5 0.1 10.0 13 253 A D H << S+ 0 0 143 -3,-1.3 -2,-0.2 -4,-0.8 -1,-0.2 0.849 126.7 37.6 -95.5 -38.5 4.7 -3.1 8.1 14 254 A V H < S- 0 0 63 -4,-3.3 -3,-0.2 1,-0.2 -2,-0.2 0.845 133.6 -4.8 -85.3 -32.4 8.3 -2.3 7.2 15 255 A A X + 0 0 0 -4,-2.2 4,-2.3 -5,-0.3 3,-0.2 -0.317 55.9 166.6-171.8 63.8 9.6 -0.4 10.2 16 256 A P H > S+ 0 0 44 0, 0.0 4,-1.6 0, 0.0 -4,-0.1 0.625 81.5 55.9 -69.5 -17.7 7.3 0.6 13.1 17 257 A N H > S+ 0 0 1 69,-0.3 4,-2.6 2,-0.2 70,-0.1 0.907 110.1 44.6 -81.7 -42.8 10.2 1.5 15.5 18 258 A L H >>S+ 0 0 1 68,-0.3 4,-2.6 2,-0.2 5,-0.9 0.974 112.9 52.2 -57.6 -56.5 11.6 4.0 13.0 19 259 A K H X5S+ 0 0 37 -4,-2.3 4,-1.5 1,-0.3 -1,-0.2 0.899 111.8 46.6 -47.2 -48.4 8.1 5.3 12.4 20 260 A A H <5S+ 0 0 46 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.898 113.7 49.3 -63.7 -39.7 7.6 5.7 16.1 21 261 A L H <5S- 0 0 13 -4,-2.6 -2,-0.2 1,-0.1 -1,-0.2 0.955 136.2 -0.9 -65.7 -54.5 11.0 7.4 16.6 22 262 A V H <5S- 0 0 23 -4,-2.6 4,-0.4 1,-0.2 -3,-0.2 0.432 109.1 -99.6-122.9 -5.0 11.0 10.1 13.9 23 263 A G X< - 0 0 28 -4,-1.5 4,-3.0 -5,-0.9 5,-0.2 -0.076 39.7 -75.9 95.5 161.4 7.6 9.6 12.2 24 264 A A H > S+ 0 0 16 1,-0.2 4,-2.2 2,-0.2 -1,-0.1 0.795 123.9 48.5 -67.0 -35.9 6.7 7.8 9.0 25 265 A K H > S+ 0 0 79 2,-0.2 4,-1.8 3,-0.2 -1,-0.2 0.921 118.3 37.9 -76.0 -49.7 7.8 10.5 6.5 26 266 A L H > S+ 0 0 26 -4,-0.4 4,-2.5 2,-0.2 5,-0.2 0.930 118.5 52.5 -61.4 -47.8 11.3 11.0 8.0 27 267 A G H X S+ 0 0 0 -4,-3.0 4,-1.7 1,-0.2 -2,-0.2 0.917 112.6 44.4 -50.9 -44.5 11.5 7.2 8.7 28 268 A A H X S+ 0 0 13 -4,-2.2 4,-2.2 -5,-0.2 -1,-0.2 0.845 110.1 55.0 -75.6 -30.5 10.6 6.4 5.1 29 269 A R H X S+ 0 0 119 -4,-1.8 4,-3.1 1,-0.2 -1,-0.2 0.910 108.1 48.9 -67.7 -41.0 13.0 9.0 3.8 30 270 A L H X S+ 0 0 1 -4,-2.5 4,-2.4 2,-0.2 6,-0.2 0.868 109.6 52.0 -66.7 -37.6 15.9 7.5 5.7 31 271 A I H X>S+ 0 0 16 -4,-1.7 4,-1.9 -5,-0.2 5,-0.9 0.955 113.0 44.8 -64.8 -47.3 15.0 4.0 4.4 32 272 A S H <5S+ 0 0 82 -4,-2.2 3,-0.4 2,-0.2 -2,-0.2 0.949 113.1 49.8 -58.9 -52.7 15.0 5.3 0.8 33 273 A L H <5S+ 0 0 59 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.879 112.5 49.2 -53.9 -38.1 18.2 7.2 1.3 34 274 A A H <5S- 0 0 19 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.840 114.8-119.6 -68.4 -31.6 19.7 4.0 2.8 35 275 A G T <5S- 0 0 59 -4,-1.9 2,-0.3 -3,-0.4 -3,-0.2 0.097 76.8 -17.2 105.9 -19.8 18.4 2.0 -0.2 36 276 A G S > S+ 0 0 24 -2,-0.3 4,-2.5 1,-0.2 5,-0.1 0.929 126.6 49.3 -52.7 -47.7 15.5 -1.5 5.5 38 278 A K H > S+ 0 0 25 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.961 112.1 46.2 -59.7 -51.9 18.4 -3.9 5.3 39 279 A E H >4 S+ 0 0 92 1,-0.3 3,-0.6 2,-0.2 4,-0.3 0.915 113.1 49.9 -61.6 -39.2 20.9 -1.3 4.1 40 280 A L H >< S+ 0 0 2 -4,-2.7 3,-1.6 1,-0.2 -1,-0.3 0.909 107.9 54.9 -59.5 -43.6 19.8 1.1 6.7 41 281 A A H 3< S+ 0 0 2 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.737 106.6 52.0 -65.0 -24.1 20.2 -1.6 9.3 42 282 A M T << S+ 0 0 134 -4,-1.4 -1,-0.3 -3,-0.6 -2,-0.2 0.397 85.8 110.7 -87.7 -1.1 23.8 -2.2 8.2 43 283 A L < - 0 0 32 -3,-1.6 -9,-0.0 -4,-0.3 -3,-0.0 -0.639 68.5-133.6 -88.3 137.8 24.9 1.5 8.5 44 284 A P - 0 0 78 0, 0.0 -1,-0.1 0, 0.0 40,-0.1 0.911 37.0-121.7 -46.6 -61.3 27.3 2.6 11.3 45 285 A S S > S+ 0 0 26 39,-0.1 4,-3.0 38,-0.0 5,-0.1 -0.201 106.4 75.0 136.4 -43.3 25.2 5.7 12.4 46 286 A S H > S+ 0 0 81 2,-0.2 4,-0.6 1,-0.2 34,-0.0 0.836 104.3 48.1 -53.3 -33.8 27.7 8.4 11.8 47 287 A T H >4 S+ 0 0 51 2,-0.2 3,-1.0 1,-0.2 4,-0.4 0.916 107.9 51.3 -75.0 -43.2 26.6 7.5 8.3 48 288 A I H >4 S+ 0 0 1 1,-0.2 3,-1.5 2,-0.2 4,-0.4 0.907 102.9 61.2 -54.3 -39.5 23.0 7.7 9.4 49 289 A Q H 3< S+ 0 0 39 -4,-3.0 7,-1.4 1,-0.3 9,-0.3 0.768 113.6 35.7 -62.4 -25.5 23.8 11.1 10.9 50 290 A V T << S+ 0 0 83 -3,-1.0 -1,-0.3 -4,-0.6 -2,-0.2 0.263 82.8 110.3-111.6 7.8 24.7 12.3 7.3 51 291 A L S < S+ 0 0 35 -3,-1.5 -2,-0.1 -4,-0.4 -1,-0.1 0.903 80.7 43.6 -55.0 -49.2 22.1 10.4 5.2 52 292 A G 0 0 16 -4,-0.4 4,-0.2 1,-0.2 -1,-0.2 0.985 360.0 360.0 -58.0 -64.0 20.0 13.4 4.2 53 293 A A 0 0 98 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.503 360.0 360.0 -29.9 360.0 22.7 16.0 3.3 54 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 55 310 A H 0 0 155 0, 0.0 -5,-0.2 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 111.7 23.7 17.9 8.4 56 311 A G > - 0 0 3 -7,-1.4 3,-2.6 -4,-0.2 4,-0.3 -0.340 360.0 -74.7 -84.6 178.2 21.6 15.1 6.9 57 312 A V G > S+ 0 0 11 1,-0.3 3,-0.8 2,-0.2 -7,-0.1 0.554 122.0 73.8 -54.1 -13.3 17.8 15.0 6.9 58 313 A I G > S+ 0 0 0 -9,-0.3 3,-2.5 -10,-0.2 -1,-0.3 0.736 75.9 77.4 -78.7 -17.0 17.6 14.1 10.6 59 314 A Y G < S+ 0 0 35 -3,-2.6 -1,-0.2 1,-0.3 6,-0.2 0.888 81.0 71.2 -54.4 -30.2 18.5 17.7 11.5 60 315 A Q G < S+ 0 0 127 -3,-0.8 -1,-0.3 -4,-0.3 -2,-0.2 0.598 72.2 119.7 -61.6 -8.8 14.9 18.4 10.6 61 316 A Y S X> S- 0 0 46 -3,-2.5 4,-2.2 1,-0.1 3,-1.6 -0.450 73.5-127.3 -62.5 129.1 14.1 16.6 13.8 62 317 A P H 3> S+ 0 0 89 0, 0.0 4,-3.2 0, 0.0 5,-0.2 0.857 105.2 52.2 -50.7 -54.2 12.3 19.0 16.1 63 318 A A H 34 S+ 0 0 40 1,-0.3 12,-0.1 2,-0.2 -2,-0.1 0.745 114.8 44.3 -55.5 -26.7 14.5 18.7 19.1 64 319 A I H X4 S+ 0 0 0 -3,-1.6 3,-0.9 -6,-0.2 -1,-0.3 0.860 115.9 45.6 -81.8 -37.9 17.6 19.4 17.0 65 320 A N H 3< S+ 0 0 100 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.1 0.876 108.7 53.8 -79.6 -36.9 16.0 22.3 15.1 66 321 A R T 3< S+ 0 0 90 -4,-3.2 -1,-0.3 -5,-0.2 -3,-0.1 0.202 103.2 89.2 -77.3 16.4 14.6 24.0 18.2 67 322 A S S < S- 0 0 25 -3,-0.9 5,-0.1 -5,-0.2 3,-0.1 -0.884 86.3 -92.8-126.4 150.2 18.1 23.9 19.6 68 323 A P >> - 0 0 43 0, 0.0 3,-1.8 0, 0.0 4,-0.7 -0.189 43.1-109.0 -46.5 137.8 21.3 26.0 19.6 69 324 A W T 34 S+ 0 0 169 1,-0.2 2,-0.3 2,-0.2 -4,-0.0 -0.272 115.9 47.8 -50.4 166.8 23.8 25.3 16.9 70 325 A W T 34 S+ 0 0 86 1,-0.2 -1,-0.2 -3,-0.1 4,-0.1 0.094 109.5 54.7 79.2 -30.1 26.4 23.7 19.2 71 326 A Q T <> S+ 0 0 23 -3,-1.8 4,-1.8 -2,-0.3 -2,-0.2 0.517 95.8 72.8 -98.6 -9.1 23.9 21.4 20.9 72 327 A R H X S+ 0 0 81 -4,-0.7 4,-3.3 2,-0.2 5,-0.1 0.939 88.6 51.0 -78.8 -50.6 22.7 20.1 17.5 73 328 A G H > S+ 0 0 34 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.813 113.4 48.9 -56.5 -32.6 25.5 17.8 16.4 74 329 A K H > S+ 0 0 54 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.916 112.3 47.1 -75.1 -44.3 25.4 16.1 19.8 75 330 A I H X S+ 0 0 12 -4,-1.8 4,-2.1 1,-0.2 -2,-0.2 0.876 110.3 54.3 -64.3 -37.1 21.7 15.7 19.5 76 331 A A H X S+ 0 0 0 -4,-3.3 4,-3.3 2,-0.2 3,-0.3 0.973 107.3 50.2 -54.1 -57.8 22.1 14.4 16.0 77 332 A R H X S+ 0 0 44 -4,-2.3 4,-2.4 1,-0.3 -2,-0.2 0.915 111.0 47.9 -49.5 -55.2 24.6 11.7 17.2 78 333 A A H X S+ 0 0 35 -4,-2.2 4,-1.9 1,-0.2 -1,-0.3 0.859 114.9 47.0 -53.8 -39.7 22.2 10.5 19.9 79 334 A L H X S+ 0 0 0 -4,-2.1 4,-2.2 -3,-0.3 -2,-0.2 0.927 109.0 52.1 -70.4 -45.2 19.3 10.4 17.4 80 335 A A H X S+ 0 0 0 -4,-3.3 4,-2.5 1,-0.2 -2,-0.2 0.941 109.1 52.1 -59.5 -45.3 21.3 8.6 14.8 81 336 A G H X S+ 0 0 22 -4,-2.4 4,-2.2 1,-0.2 -1,-0.2 0.921 109.6 47.6 -51.0 -52.5 22.2 6.0 17.4 82 337 A K H X S+ 0 0 41 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.840 112.0 52.3 -59.9 -31.8 18.6 5.5 18.4 83 338 A L H X S+ 0 0 1 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.870 105.6 53.2 -70.7 -40.1 17.8 5.2 14.7 84 339 A A H X S+ 0 0 2 -4,-2.5 4,-1.4 2,-0.2 -2,-0.2 0.919 113.9 42.3 -62.2 -47.3 20.5 2.6 14.1 85 340 A I H X S+ 0 0 55 -4,-2.2 4,-2.6 2,-0.2 5,-0.3 0.921 111.9 56.1 -62.9 -46.4 19.0 0.5 16.9 86 341 A A H X S+ 0 0 0 -4,-2.5 4,-1.4 1,-0.2 -68,-0.3 0.908 109.8 43.8 -53.3 -46.0 15.4 1.2 15.7 87 342 A A H X S+ 0 0 0 -4,-2.5 4,-1.6 2,-0.2 -1,-0.2 0.843 111.3 55.4 -73.0 -34.3 16.1 -0.1 12.2 88 343 A R H X>S+ 0 0 95 -4,-1.4 4,-2.7 -5,-0.2 5,-0.6 0.951 108.9 45.1 -64.8 -52.3 18.0 -3.1 13.5 89 344 A V H X>S+ 0 0 25 -4,-2.6 5,-2.9 1,-0.2 4,-0.7 0.809 113.4 53.2 -57.0 -32.4 15.1 -4.3 15.7 90 345 A D H <5S+ 0 0 15 -4,-1.4 -1,-0.2 -5,-0.3 -2,-0.2 0.811 118.2 34.3 -73.4 -31.5 12.8 -3.6 12.8 91 346 A Y H <5S+ 0 0 120 -4,-1.6 -2,-0.2 -3,-0.4 -3,-0.2 0.941 130.7 24.4 -88.2 -49.8 14.8 -5.7 10.4 92 347 A F H <5S+ 0 0 135 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.1 0.720 134.0 21.9 -92.8 -32.9 16.1 -8.6 12.5 93 348 A S T < + 0 0 8 1,-0.2 2,-3.4 2,-0.1 3,-1.4 0.135 50.7 85.7 -4.7 -46.1 9.9 2.4 20.7 99 354 A E T 3 + 0 0 78 -2,-1.2 4,-0.5 1,-0.3 -1,-0.2 0.048 57.4 96.4 -54.3 36.8 10.1 3.9 24.3 100 355 A E T 3> + 0 0 6 -2,-3.4 4,-1.9 2,-0.2 -1,-0.3 0.177 66.4 79.9 -95.8 5.5 13.8 4.3 23.6 101 356 A L H <> S+ 0 0 48 -3,-1.4 4,-4.1 2,-0.2 5,-0.2 0.833 89.5 53.7 -61.0 -39.9 12.3 7.6 22.9 102 357 A K H > S+ 0 0 64 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.950 107.5 44.9 -60.9 -53.1 12.6 7.7 26.7 103 358 A K H > S+ 0 0 106 -4,-0.5 4,-1.5 1,-0.2 -1,-0.2 0.958 118.7 48.5 -49.8 -46.3 16.2 6.8 26.7 104 359 A E H X S+ 0 0 8 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.886 107.1 48.8 -70.1 -50.4 16.5 9.4 24.0 105 360 A L H >X S+ 0 0 61 -4,-4.1 4,-2.0 1,-0.2 3,-0.6 0.988 110.1 56.9 -46.8 -62.0 14.6 12.3 25.5 106 361 A E H 3X S+ 0 0 60 -4,-2.0 4,-1.3 1,-0.3 -2,-0.2 0.751 105.9 47.6 -42.5 -43.2 16.6 11.8 28.6 107 362 A A H 3X S+ 0 0 42 -4,-1.5 4,-2.8 2,-0.2 3,-0.4 0.935 107.4 56.4 -65.7 -46.8 20.0 12.2 26.8 108 363 A R H