==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-APR-06 2GRG . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; YNR034W-AP; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR B.WU,A.YEE,T.RAMELOT,A.LEMAK,A.SEMESI,M.KENNEDY,A.EDWARD, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6295.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 71.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 30.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 15.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 227 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -25.0 -18.2 7.7 -5.2 2 2 A K - 0 0 104 56,-0.0 3,-0.1 2,-0.0 0, 0.0 0.958 360.0-175.6 -79.7 -59.4 -14.7 6.2 -4.7 3 3 A S - 0 0 67 1,-0.1 2,-1.0 55,-0.1 55,-0.1 0.595 37.5 -95.4 69.9 135.3 -13.1 9.2 -3.0 4 4 A S - 0 0 39 88,-0.2 53,-0.2 53,-0.1 -1,-0.1 -0.748 49.5-155.3 -82.5 104.5 -9.5 9.5 -2.0 5 5 A I E -A 56 0A 51 51,-1.2 51,-2.5 -2,-1.0 86,-0.1 -0.610 16.5-105.9 -92.5 139.2 -9.7 8.4 1.7 6 6 A P E >> -A 55 0A 13 0, 0.0 4,-2.3 0, 0.0 3,-1.5 -0.209 23.5-120.1 -63.8 153.2 -7.1 9.5 4.3 7 7 A I H 3> S+ 0 0 36 47,-1.0 4,-2.7 1,-0.3 48,-0.1 0.784 108.5 72.2 -66.5 -26.5 -4.5 7.0 5.6 8 8 A T H 34 S+ 0 0 97 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.792 112.3 29.4 -58.7 -26.9 -5.8 7.3 9.1 9 9 A E H <> S+ 0 0 49 -3,-1.5 4,-1.6 2,-0.1 -2,-0.2 0.853 121.5 48.7 -96.8 -47.8 -8.8 5.3 7.9 10 10 A V H X S+ 0 0 3 -4,-2.3 4,-1.1 1,-0.2 -3,-0.2 0.857 102.1 64.2 -67.0 -36.6 -7.4 3.2 5.2 11 11 A L H >< S+ 0 0 91 -4,-2.7 3,-1.0 1,-0.2 -1,-0.2 0.954 111.0 33.3 -53.1 -62.2 -4.4 2.0 7.2 12 12 A P H 34 S+ 0 0 94 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.824 118.5 55.1 -65.5 -30.2 -6.4 0.0 9.9 13 13 A R H 3< S+ 0 0 55 -4,-1.6 -2,-0.2 68,-0.1 2,-0.2 0.615 92.6 96.1 -77.4 -12.4 -9.1 -0.9 7.3 14 14 A A << - 0 0 18 -4,-1.1 67,-0.3 -3,-1.0 3,-0.1 -0.493 49.7-173.1 -83.2 149.4 -6.4 -2.5 5.1 15 15 A V S S+ 0 0 61 65,-3.3 17,-2.4 1,-0.2 2,-0.3 0.234 75.1 33.2-120.0 6.3 -5.6 -6.2 5.0 16 16 A G E -BC 31 80B 2 64,-1.1 64,-3.1 15,-0.3 2,-0.3 -0.981 61.4-167.9-159.8 151.1 -2.6 -5.8 2.8 17 17 A S E -BC 30 79B 28 13,-3.1 13,-2.4 -2,-0.3 2,-0.6 -0.957 7.1-159.4-151.8 127.9 0.2 -3.3 2.0 18 18 A L E -BC 29 78B 0 60,-2.8 60,-2.7 -2,-0.3 2,-0.7 -0.932 10.5-153.5-108.8 119.6 2.8 -3.0 -0.7 19 19 A T E -BC 28 77B 31 9,-2.8 8,-3.4 -2,-0.6 9,-1.9 -0.831 20.7-179.9 -93.8 113.5 5.8 -0.8 -0.0 20 20 A F E -BC 26 76B 6 56,-3.6 56,-1.9 -2,-0.7 6,-0.2 -0.773 23.7-123.0-108.3 155.7 7.2 0.6 -3.3 21 21 A D > - 0 0 26 4,-2.7 3,-1.9 -2,-0.3 54,-0.1 -0.457 33.6-104.3 -86.6 168.7 10.2 2.8 -3.8 22 22 A E T 3 S+ 0 0 119 52,-0.4 53,-0.1 1,-0.3 -1,-0.1 0.708 124.9 63.2 -68.9 -18.1 10.0 6.2 -5.6 23 23 A N T 3 S- 0 0 104 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.230 123.3-111.8 -85.1 12.2 11.5 4.4 -8.6 24 24 A Y S < S+ 0 0 76 -3,-1.9 2,-0.5 1,-0.2 -2,-0.2 0.740 71.1 145.7 64.7 27.5 8.3 2.4 -8.5 25 25 A N - 0 0 94 17,-0.0 -4,-2.7 1,-0.0 -1,-0.2 -0.823 55.0-113.1 -98.4 129.8 10.3 -0.7 -7.4 26 26 A L E +B 20 0B 70 -2,-0.5 -6,-0.3 -6,-0.2 3,-0.1 -0.422 41.9 164.4 -62.6 128.4 8.6 -3.2 -5.0 27 27 A L E + 0 0 90 -8,-3.4 2,-0.4 1,-0.4 -7,-0.2 0.775 61.4 15.1-109.0 -54.2 10.4 -3.2 -1.7 28 28 A D E -B 19 0B 71 -9,-1.9 -9,-2.8 2,-0.0 2,-0.5 -0.968 54.6-162.9-131.5 140.9 8.1 -4.9 0.8 29 29 A T E +B 18 0B 40 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.982 21.0 167.0-124.1 119.7 5.0 -7.1 0.4 30 30 A S E > -B 17 0B 48 -13,-2.4 -13,-3.1 -2,-0.5 3,-1.0 -0.958 43.2 -4.4-133.5 149.3 2.7 -7.6 3.4 31 31 A G E > S-B 16 0B 35 -2,-0.3 3,-1.8 -15,-0.3 -15,-0.3 -0.327 122.5 -18.1 75.1-151.8 -0.8 -8.9 4.0 32 32 A V G >> S+ 0 0 28 -17,-2.4 3,-1.5 1,-0.3 4,-1.5 0.692 120.6 84.6 -64.0 -16.4 -3.1 -10.0 1.2 33 33 A A G <4 S+ 0 0 0 -3,-1.0 -1,-0.3 1,-0.3 -2,-0.2 0.659 77.8 68.9 -61.5 -14.5 -0.9 -8.0 -1.1 34 34 A K G <4 S+ 0 0 142 -3,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.847 106.3 35.7 -72.7 -34.8 1.3 -11.1 -1.2 35 35 A V T <4 S+ 0 0 120 -3,-1.5 2,-0.2 -4,-0.2 -2,-0.2 0.638 104.6 86.5 -94.1 -17.9 -1.3 -13.1 -3.2 36 36 A I S < S- 0 0 11 -4,-1.5 2,-0.1 1,-0.1 0, 0.0 -0.573 85.9-111.9 -79.3 146.3 -2.4 -10.0 -5.2 37 37 A E - 0 0 106 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.1 -0.424 13.1-154.2 -82.7 159.0 -0.5 -9.3 -8.4 38 38 A K >> + 0 0 65 -2,-0.1 4,-0.8 1,-0.1 3,-0.7 0.362 59.4 113.9-110.7 1.3 1.8 -6.2 -8.8 39 39 A S T 34 S+ 0 0 90 1,-0.2 3,-0.3 2,-0.1 4,-0.3 0.868 87.0 17.1 -48.0 -65.8 1.5 -6.0 -12.6 40 40 A P T 3> S+ 0 0 60 0, 0.0 4,-1.3 0, 0.0 -1,-0.2 0.435 103.9 89.6 -93.7 2.5 -0.3 -2.6 -13.3 41 41 A I H <> S+ 0 0 0 -3,-0.7 4,-2.3 1,-0.2 -2,-0.1 0.887 79.6 56.8 -71.5 -39.5 0.1 -1.1 -9.9 42 42 A A H X S+ 0 0 29 -4,-0.8 4,-1.7 -3,-0.3 -1,-0.2 0.904 107.2 49.7 -60.1 -42.8 3.5 0.7 -10.5 43 43 A E H > S+ 0 0 88 -4,-0.3 4,-1.6 1,-0.2 -1,-0.2 0.869 113.3 46.1 -63.3 -37.8 2.0 2.6 -13.4 44 44 A I H X S+ 0 0 41 -4,-1.3 4,-3.2 2,-0.2 -1,-0.2 0.808 104.9 62.4 -77.3 -27.3 -1.0 3.7 -11.3 45 45 A I H X S+ 0 0 0 -4,-2.3 4,-1.6 2,-0.2 -2,-0.2 0.928 107.0 43.2 -62.2 -45.6 1.3 4.6 -8.4 46 46 A R H X S+ 0 0 123 -4,-1.7 4,-1.3 2,-0.2 -1,-0.2 0.920 115.1 49.8 -66.2 -43.0 3.0 7.3 -10.5 47 47 A K H >X S+ 0 0 107 -4,-1.6 4,-1.4 1,-0.2 3,-0.6 0.937 113.9 45.3 -59.0 -46.0 -0.4 8.5 -11.9 48 48 A S H 3X S+ 0 0 0 -4,-3.2 4,-3.4 1,-0.2 -1,-0.2 0.760 101.4 68.4 -70.0 -25.5 -1.7 8.6 -8.4 49 49 A N H 3< S+ 0 0 63 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.888 107.7 38.4 -59.6 -38.0 1.4 10.4 -7.3 50 50 A A H << S+ 0 0 79 -4,-1.3 -1,-0.2 -3,-0.6 -2,-0.2 0.802 120.1 48.5 -79.2 -31.1 0.3 13.3 -9.3 51 51 A E H < S+ 0 0 130 -4,-1.4 -2,-0.2 -5,-0.2 -3,-0.2 0.931 112.9 35.5 -76.0 -49.0 -3.4 12.8 -8.3 52 52 A L < - 0 0 16 -4,-3.4 4,-0.1 1,-0.2 18,-0.1 -0.496 46.3-178.0-107.8 170.5 -3.2 12.5 -4.6 53 53 A G S S- 0 0 44 -2,-0.2 18,-0.9 18,-0.0 -1,-0.2 0.414 86.0 -10.6-124.5 -81.6 -1.2 13.8 -1.7 54 54 A R S S+ 0 0 151 16,-0.1 -47,-1.0 -50,-0.1 2,-0.2 0.285 117.0 90.1-106.7 7.1 -2.0 12.4 1.8 55 55 A L E S-A 6 0A 28 -49,-0.2 2,-0.8 -48,-0.1 16,-0.3 -0.654 80.5-113.5-102.0 161.1 -5.2 10.6 0.5 56 56 A G E -A 5 0A 0 -51,-2.5 -51,-1.2 -2,-0.2 2,-0.4 -0.836 25.4-162.2-101.8 107.0 -5.5 7.1 -0.8 57 57 A Y E -D 69 0B 94 12,-1.1 12,-2.7 -2,-0.8 2,-0.5 -0.718 30.5-111.8 -85.4 129.1 -6.4 6.9 -4.5 58 58 A S E +D 68 0B 23 -2,-0.4 10,-0.3 10,-0.3 3,-0.2 -0.500 46.1 164.4 -65.8 113.7 -7.7 3.5 -5.5 59 59 A V E + 0 0 17 8,-2.3 2,-0.5 -2,-0.5 9,-0.2 0.738 66.1 34.7-102.2 -31.6 -5.1 2.1 -7.8 60 60 A Y E -D 67 0B 30 7,-1.5 7,-3.5 -16,-0.0 2,-0.7 -0.885 64.0-179.2-133.5 100.1 -6.1 -1.6 -7.9 61 61 A E E +D 66 0B 106 -2,-0.5 2,-0.3 5,-0.3 5,-0.2 -0.891 13.5 164.3-104.4 112.5 -9.7 -2.5 -7.7 62 62 A D - 0 0 48 3,-2.7 -2,-0.0 -2,-0.7 21,-0.0 -0.750 51.5-109.1-117.6 167.2 -10.4 -6.3 -7.8 63 63 A A S S+ 0 0 91 -2,-0.3 3,-0.1 1,-0.1 -1,-0.0 0.747 120.3 41.4 -68.8 -21.9 -13.5 -8.2 -6.9 64 64 A Q S S- 0 0 119 1,-0.3 2,-0.3 0, 0.0 -1,-0.1 0.936 127.9 -5.4 -86.5 -58.8 -11.6 -9.4 -3.8 65 65 A Y - 0 0 63 17,-0.2 -3,-2.7 18,-0.1 2,-0.4 -0.860 56.8-133.8-138.0 165.9 -9.8 -6.3 -2.5 66 66 A I E -DE 61 81B 17 15,-3.4 15,-3.3 -2,-0.3 2,-0.3 -0.984 17.8-150.1-129.4 122.7 -9.1 -2.7 -3.4 67 67 A G E -DE 60 80B 0 -7,-3.5 -8,-2.3 -2,-0.4 -7,-1.5 -0.702 8.0-164.0 -94.6 141.4 -5.7 -1.2 -3.2 68 68 A H E -DE 58 79B 13 11,-2.2 11,-2.8 -2,-0.3 2,-0.3 -0.986 14.7-133.5-126.3 131.6 -5.1 2.5 -2.5 69 69 A A E -DE 57 78B 1 -12,-2.7 -12,-1.1 -2,-0.4 2,-0.4 -0.622 22.9-173.1 -85.3 141.5 -1.8 4.4 -3.1 70 70 A F E - E 0 77B 4 7,-2.3 7,-2.1 -2,-0.3 2,-0.8 -0.981 27.1-124.6-132.1 144.6 -0.4 6.7 -0.4 71 71 A K E + E 0 76B 53 -18,-0.9 5,-0.2 -2,-0.4 2,-0.1 -0.819 41.7 179.1 -85.9 111.8 2.6 9.1 -0.4 72 72 A K E > - E 0 75B 79 3,-2.9 2,-1.4 -2,-0.8 3,-0.6 -0.389 46.2 -51.6-105.3-175.5 4.7 8.0 2.5 73 73 A A T 3 S- 0 0 103 1,-0.3 3,-0.1 -2,-0.1 -1,-0.1 -0.385 119.1 -34.3 -64.1 89.9 8.0 9.2 4.0 74 74 A G T 3 S+ 0 0 54 -2,-1.4 -52,-0.4 1,-0.2 -1,-0.3 0.565 132.1 74.0 74.9 8.8 10.1 9.2 0.8 75 75 A H E < S- E 0 72B 62 -3,-0.6 -3,-2.9 -54,-0.1 2,-0.5 -0.915 75.4-117.9-147.7 169.7 8.3 6.2 -0.5 76 76 A F E -CE 20 71B 20 -56,-1.9 -56,-3.6 -2,-0.3 2,-0.4 -0.954 27.1-175.7-116.7 128.3 5.0 4.9 -2.0 77 77 A I E -CE 19 70B 20 -7,-2.1 -7,-2.3 -2,-0.5 2,-0.6 -0.984 14.4-151.6-128.9 135.4 2.8 2.4 -0.3 78 78 A V E -CE 18 69B 0 -60,-2.7 -60,-2.8 -2,-0.4 2,-0.6 -0.918 10.8-157.4-106.6 115.1 -0.4 0.7 -1.5 79 79 A Y E -CE 17 68B 16 -11,-2.8 -11,-2.2 -2,-0.6 2,-0.6 -0.829 7.6-150.1 -95.9 119.9 -2.8 -0.3 1.2 80 80 A F E -CE 16 67B 0 -64,-3.1 -65,-3.3 -2,-0.6 -64,-1.1 -0.802 12.4-168.2 -94.7 118.1 -5.2 -3.0 0.1 81 81 A T E - E 0 66B 5 -15,-3.3 -15,-3.4 -2,-0.6 2,-2.7 -0.824 32.8-114.7-105.5 145.0 -8.6 -3.0 1.8 82 82 A P S S- 0 0 54 0, 0.0 3,-0.2 0, 0.0 -17,-0.2 -0.291 76.2 -71.2 -74.7 59.6 -11.2 -5.9 1.6 83 83 A K - 0 0 83 -2,-2.7 2,-0.6 1,-0.2 -18,-0.1 0.939 69.4-155.7 46.7 52.6 -13.6 -3.7 -0.4 84 84 A N + 0 0 54 1,-0.2 -1,-0.2 -18,-0.2 -3,-0.1 -0.434 36.7 149.7 -64.2 106.9 -14.2 -1.8 2.9 85 85 A K + 0 0 181 -2,-0.6 2,-0.4 -3,-0.2 3,-0.3 0.249 38.1 102.4-122.7 7.0 -17.7 -0.3 2.5 86 86 A N S S+ 0 0 102 1,-0.2 -2,-0.0 2,-0.0 -3,-0.0 -0.769 82.8 9.7-100.9 141.5 -18.7 -0.2 6.1 87 87 A R + 0 0 189 -2,-0.4 -1,-0.2 1,-0.1 -3,-0.0 0.994 68.0 159.3 55.6 73.8 -18.7 2.9 8.3 88 88 A E + 0 0 126 -3,-0.3 2,-1.5 1,-0.1 -1,-0.1 -0.015 24.2 127.6-113.1 27.5 -18.1 5.5 5.6 89 89 A G + 0 0 82 2,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.171 51.5 91.4 -80.5 45.3 -19.4 8.4 7.6 90 90 A V - 0 0 65 -2,-1.5 -81,-0.0 2,-0.0 0, 0.0 -0.976 61.3-154.6-143.1 124.3 -16.2 10.4 7.0 91 91 A V - 0 0 128 -2,-0.4 -2,-0.0 -86,-0.1 -86,-0.0 -0.851 9.9-140.3-105.4 131.9 -15.5 12.7 4.1 92 92 A P - 0 0 29 0, 0.0 -88,-0.2 0, 0.0 -87,-0.0 -0.806 26.9-117.4 -88.0 123.1 -12.0 13.5 2.8 93 93 A P - 0 0 102 0, 0.0 3,-0.1 0, 0.0 -89,-0.0 -0.303 17.6-126.3 -57.5 141.3 -11.5 17.2 1.8 94 94 A V - 0 0 152 1,-0.2 3,-0.1 -91,-0.0 2,-0.1 0.583 63.0 -89.9 -69.7 -10.2 -10.8 17.7 -1.9 95 95 A G - 0 0 39 1,-0.1 -1,-0.2 -42,-0.0 2,-0.1 -0.146 27.7 -92.2 114.8 152.0 -7.6 19.7 -1.0 96 96 A I + 0 0 161 -3,-0.1 2,-1.1 -2,-0.1 -1,-0.1 -0.052 63.9 153.7 -88.8 34.4 -6.6 23.2 -0.2 97 97 A T 0 0 132 -3,-0.1 -3,-0.0 -2,-0.1 -2,-0.0 -0.512 360.0 360.0 -69.6 97.8 -5.7 23.8 -3.9 98 98 A N 0 0 212 -2,-1.1 -2,-0.0 0, 0.0 -1,-0.0 -0.872 360.0 360.0-132.7 360.0 -6.2 27.5 -4.3