==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-AUG-12 4GS3 . COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; . AUTHOR D.LIEBSCHNER,K.BRZEZINSKI,M.DAUTER,Z.DAUTER,M.NOWAK,J.KUR,M. . 90 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6193.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 63.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 41 45.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A E 0 0 191 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 157.1 33.6 30.2 6.8 2 8 A N + 0 0 149 1,-0.3 2,-0.2 0, 0.0 0, 0.0 0.424 360.0 39.5 -88.4 2.2 35.7 27.6 5.0 3 9 A N S S+ 0 0 48 2,-0.0 2,-0.4 64,-0.0 -1,-0.3 -0.745 72.9 151.9-160.3 98.7 32.8 25.2 4.5 4 10 A T - 0 0 83 -2,-0.2 2,-0.4 -3,-0.2 64,-0.2 -0.998 18.4-173.7-141.5 138.2 29.4 26.5 3.7 5 11 A V E -A 67 0A 28 62,-2.5 62,-2.3 -2,-0.4 2,-0.4 -0.994 2.3-170.5-129.6 130.2 26.5 25.1 1.8 6 12 A T E +A 66 0A 84 -2,-0.4 2,-0.4 60,-0.2 60,-0.2 -0.996 13.5 173.5-121.7 130.4 23.3 27.0 0.9 7 13 A L E -A 65 0A 22 58,-2.5 58,-2.8 -2,-0.4 2,-0.4 -0.986 19.4-166.8-134.1 142.9 20.3 25.1 -0.5 8 14 A V E +A 64 0A 61 -2,-0.4 2,-0.3 56,-0.2 56,-0.2 -0.992 44.1 101.5-125.5 121.6 16.8 25.9 -1.4 9 15 A G E -A 63 0A 4 54,-2.1 54,-2.8 -2,-0.4 2,-0.4 -0.918 63.0 -69.0-171.9-163.6 14.5 23.0 -2.1 10 16 A K E -AB 62 32A 57 22,-2.3 22,-2.9 -2,-0.3 2,-0.3 -0.883 42.6-106.2-116.7 141.1 11.7 20.7 -0.8 11 17 A V E + B 0 31A 3 50,-2.8 49,-2.8 -2,-0.4 20,-0.2 -0.508 41.1 176.5 -59.6 121.6 11.7 18.1 2.0 12 18 A F + 0 0 92 18,-3.1 19,-0.2 -2,-0.3 -1,-0.2 0.745 63.7 27.3-106.4 -37.8 11.7 14.9 -0.1 13 19 A T S S- 0 0 43 17,-1.3 -1,-0.3 45,-0.1 17,-0.2 -0.926 96.3 -96.8-122.0 154.0 11.8 12.2 2.6 14 20 A P - 0 0 65 0, 0.0 2,-0.2 0, 0.0 14,-0.1 -0.270 44.4 -87.8 -72.2 158.9 10.6 12.6 6.1 15 21 A L - 0 0 39 42,-0.4 2,-0.5 14,-0.1 14,-0.2 -0.399 48.5-164.2 -61.6 125.0 12.7 13.6 9.1 16 22 A E E -C 28 0A 120 12,-2.6 12,-2.5 -2,-0.2 2,-0.1 -0.963 22.2-116.1-119.1 127.3 14.0 10.3 10.5 17 23 A F E +C 27 0A 112 -2,-0.5 10,-0.3 10,-0.2 3,-0.1 -0.390 33.1 176.7 -58.6 130.4 15.4 10.2 14.0 18 24 A S E - 0 0 38 8,-3.1 2,-0.3 1,-0.4 -1,-0.2 0.800 49.1 -75.6 -97.7 -65.5 19.1 9.2 13.8 19 25 A H E -C 26 0A 108 7,-0.6 7,-2.1 5,-0.1 -1,-0.4 -0.957 44.7 -80.9-175.2-169.1 20.1 9.4 17.4 20 26 A E E -C 25 0A 98 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.804 10.2-153.0-120.5 157.0 21.0 11.6 20.3 21 27 A L E > S-C 24 0A 85 3,-2.4 3,-2.3 -2,-0.3 -2,-0.0 -0.925 87.5 -34.5-123.0 106.3 23.8 13.5 21.7 22 28 A Y T 3 S- 0 0 228 -2,-0.5 -1,-0.1 1,-0.3 3,-0.1 0.888 128.8 -43.2 45.4 43.3 23.7 13.9 25.4 23 29 A G T 3 S+ 0 0 44 1,-0.3 2,-0.4 0, 0.0 -1,-0.3 0.157 109.8 125.4 88.4 -19.5 19.9 14.0 25.0 24 30 A E E < -C 21 0A 53 -3,-2.3 -3,-2.4 1,-0.0 2,-0.4 -0.582 56.6-135.3 -69.9 129.3 19.9 16.4 21.9 25 31 A K E -C 20 0A 87 -2,-0.4 24,-2.7 -5,-0.2 2,-0.4 -0.719 19.0-165.6 -94.3 131.6 17.8 14.7 19.1 26 32 A F E -CD 19 48A 21 -7,-2.1 -8,-3.1 -2,-0.4 -7,-0.6 -0.916 1.5-164.9-116.7 146.6 19.1 14.7 15.5 27 33 A F E -CD 17 47A 38 20,-2.6 20,-2.7 -2,-0.4 2,-0.3 -0.948 6.8-150.6-130.3 146.2 17.2 13.9 12.4 28 34 A N E +CD 16 46A 46 -12,-2.5 -12,-2.6 -2,-0.3 2,-0.3 -0.895 23.2 158.9-112.0 148.1 18.2 13.1 8.8 29 35 A F E - D 0 45A 4 16,-2.1 16,-2.9 -2,-0.3 2,-0.4 -0.977 36.3-111.7-157.0 165.4 16.2 13.8 5.7 30 36 A I E - D 0 44A 50 -2,-0.3 -18,-3.1 -17,-0.2 -17,-1.3 -0.863 23.2-153.6-104.0 135.3 16.6 14.3 2.0 31 37 A L E -BD 11 43A 0 12,-2.8 12,-2.8 -2,-0.4 2,-0.6 -0.918 8.1-143.6-105.3 131.0 16.1 17.6 0.2 32 38 A E E -BD 10 42A 41 -22,-2.9 -22,-2.3 -2,-0.5 10,-0.2 -0.852 20.6-175.1 -93.3 121.3 15.1 17.8 -3.4 33 39 A V E - D 0 41A 23 8,-2.8 8,-2.5 -2,-0.6 2,-0.2 -0.960 16.5-137.8-122.3 115.2 16.9 20.7 -5.1 34 40 A P E - D 0 40A 65 0, 0.0 6,-0.2 0, 0.0 2,-0.1 -0.510 9.4-143.7 -79.0 138.1 16.0 21.5 -8.7 35 41 A R > - 0 0 124 4,-3.0 3,-2.2 -2,-0.2 0, 0.0 -0.475 34.2-102.0 -81.2 163.1 18.6 22.5 -11.3 36 42 A L T 3 S+ 0 0 179 1,-0.3 -1,-0.1 -2,-0.1 0, 0.0 0.886 128.2 54.9 -50.1 -38.7 17.9 25.1 -14.0 37 43 A S T 3 S- 0 0 84 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.563 119.1-117.2 -70.7 -13.6 17.5 22.2 -16.4 38 44 A E S < S+ 0 0 123 -3,-2.2 -2,-0.1 1,-0.4 -1,-0.1 0.178 72.6 135.6 82.5 -3.4 14.9 20.8 -13.9 39 45 A T - 0 0 76 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.4 -0.443 53.0-130.2 -51.6 144.1 17.0 17.7 -13.2 40 46 A K E -D 34 0A 76 -6,-0.2 2,-0.4 -3,-0.1 -1,-0.1 -0.853 13.2-147.9-107.0 145.5 16.9 17.3 -9.4 41 47 A D E -D 33 0A 51 -8,-2.5 -8,-2.8 -2,-0.4 2,-0.6 -0.886 10.5-150.0-100.7 139.9 19.6 16.7 -6.8 42 48 A Y E -D 32 0A 116 -2,-0.4 -10,-0.2 -10,-0.2 -12,-0.0 -0.956 24.0-173.3-114.6 107.8 18.7 14.6 -3.8 43 49 A L E -D 31 0A 49 -12,-2.8 -12,-2.8 -2,-0.6 2,-0.4 -0.860 22.4-122.1-119.1 137.3 20.8 15.9 -0.9 44 50 A P E -D 30 0A 44 0, 0.0 37,-2.6 0, 0.0 2,-0.4 -0.607 28.6-173.7 -82.3 130.9 21.3 14.6 2.6 45 51 A I E -De 29 81A 1 -16,-2.9 -16,-2.1 -2,-0.4 2,-0.4 -0.953 10.3-165.0-120.0 144.4 20.5 17.0 5.5 46 52 A T E +De 28 82A 10 35,-2.6 37,-2.8 -2,-0.4 2,-0.4 -0.995 16.4 177.8-124.9 133.3 21.1 16.5 9.2 47 53 A I E -D 27 0A 0 -20,-2.7 -20,-2.6 -2,-0.4 2,-0.3 -0.999 26.5-130.8-142.3 140.7 19.3 18.8 11.7 48 54 A S E > -D 26 0A 7 -2,-0.4 3,-1.9 35,-0.3 4,-0.4 -0.598 25.8-126.0 -77.4 143.1 19.1 19.2 15.4 49 55 A N G > S+ 0 0 48 -24,-2.7 3,-0.7 1,-0.3 4,-0.3 0.728 106.8 74.7 -71.1 -7.7 15.6 19.6 16.8 50 56 A R G 3 S+ 0 0 182 -25,-0.3 3,-0.4 1,-0.2 -1,-0.3 0.773 95.0 51.6 -60.9 -30.1 16.9 22.8 18.4 51 57 A L G < S+ 0 0 57 -3,-1.9 35,-0.3 1,-0.2 -1,-0.2 0.547 108.7 42.9 -89.8 -9.7 16.8 24.4 15.0 52 58 A F S X S+ 0 0 33 -3,-0.7 3,-2.1 -4,-0.4 -1,-0.2 0.185 71.4 140.4-125.7 19.9 13.4 23.8 13.8 53 59 A E T 3 S+ 0 0 158 -3,-0.4 3,-0.1 -4,-0.3 -3,-0.0 -0.393 76.1 25.6 -53.1 131.7 11.5 24.5 16.9 54 60 A G T 3 S+ 0 0 85 1,-0.2 2,-0.3 -2,-0.0 -1,-0.3 0.012 109.8 87.0 99.5 -29.3 8.4 26.3 15.7 55 61 A M < - 0 0 54 -3,-2.1 2,-0.5 2,-0.0 -1,-0.2 -0.719 66.4-135.4-114.0 162.4 8.4 24.9 12.3 56 62 A N - 0 0 96 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.909 10.9-169.9-105.4 130.9 7.0 21.8 10.6 57 63 A L + 0 0 12 -2,-0.5 -42,-0.4 31,-0.0 3,-0.1 -0.311 26.4 156.4-113.5 52.3 9.2 20.0 8.2 58 64 A E > - 0 0 138 1,-0.1 3,-2.4 -44,-0.1 -47,-0.3 -0.274 59.0 -74.6 -66.9 155.9 6.7 17.6 6.6 59 65 A V T 3 S+ 0 0 79 1,-0.3 -47,-0.2 -47,-0.1 -1,-0.1 -0.311 123.8 32.0 -49.7 131.2 7.4 16.2 3.2 60 66 A G T 3 S+ 0 0 37 -49,-2.8 -1,-0.3 1,-0.4 2,-0.1 0.134 83.1 136.5 98.2 -13.4 6.8 18.9 0.6 61 67 A T < - 0 0 19 -3,-2.4 -50,-2.8 -51,-0.1 2,-0.4 -0.448 50.4-135.4 -65.4 136.2 7.8 21.8 2.8 62 68 A R E +AF 10 89A 90 27,-0.5 27,-2.3 -52,-0.2 2,-0.3 -0.804 32.8 171.3 -96.8 136.5 10.1 24.3 1.0 63 69 A V E -AF 9 88A 0 -54,-2.8 -54,-2.1 -2,-0.4 2,-0.5 -0.955 35.2-138.8-142.2 154.3 13.1 25.5 2.9 64 70 A K E -AF 8 87A 111 23,-2.4 23,-2.0 -2,-0.3 2,-0.4 -0.988 31.6-170.1-109.1 128.4 16.3 27.5 2.7 65 71 A I E -AF 7 86A 1 -58,-2.8 -58,-2.5 -2,-0.5 2,-0.4 -0.960 15.4-170.3-120.9 136.4 19.1 25.8 4.5 66 72 A E E +AF 6 85A 45 19,-2.2 18,-3.2 -2,-0.4 19,-2.0 -0.989 33.0 126.1-114.9 138.0 22.6 27.0 5.4 67 73 A G E -AF 5 83A 0 -62,-2.3 -62,-2.5 -2,-0.4 2,-0.4 -0.925 53.8 -80.6-169.2-169.1 25.1 24.4 6.8 68 74 A Q E - F 0 82A 41 14,-2.2 14,-3.0 -2,-0.3 2,-0.7 -0.910 35.1-125.7-111.4 133.5 28.4 22.7 6.8 69 75 A L E - F 0 81A 87 -2,-0.4 2,-0.4 12,-0.2 12,-0.2 -0.727 41.8-174.5 -82.7 116.8 29.2 19.7 4.5 70 76 A R E - F 0 80A 98 10,-3.2 10,-2.3 -2,-0.7 2,-0.4 -0.880 25.9-157.0-116.7 144.3 30.4 17.0 6.9 71 77 A S E + F 0 79A 78 -2,-0.4 2,-0.3 8,-0.2 8,-0.2 -0.910 26.4 168.2-104.4 145.7 31.8 13.6 6.6 72 78 A Y E - F 0 78A 67 6,-2.1 6,-2.7 -2,-0.4 2,-0.9 -0.993 41.1-113.7-155.0 157.6 31.3 11.3 9.6 73 79 A N E F 0 77A 140 -2,-0.3 4,-0.2 4,-0.2 -2,-0.0 -0.818 360.0 360.0 -96.7 104.4 31.7 7.6 10.5 74 80 A R 0 0 170 2,-2.6 -2,-0.0 -2,-0.9 0, 0.0 -0.513 360.0 360.0 -75.7 360.0 28.2 6.4 11.2 75 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 76 89 A K 0 0 163 0, 0.0 -2,-2.6 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 166.3 30.3 3.5 7.2 77 90 A L E - F 0 73A 96 -4,-0.2 2,-0.4 -6,-0.1 -4,-0.2 -0.603 360.0-171.6 -76.2 129.0 31.3 7.0 6.2 78 91 A I E - F 0 72A 37 -6,-2.7 -6,-2.1 -2,-0.4 2,-0.4 -0.934 14.5-144.3-121.4 144.5 28.3 9.2 5.5 79 92 A L E + F 0 71A 101 -2,-0.4 2,-0.3 -8,-0.2 -8,-0.2 -0.866 27.3 164.4-104.2 143.3 28.1 12.7 4.0 80 93 A T E - F 0 70A 5 -10,-2.3 -10,-3.2 -2,-0.4 2,-0.9 -0.994 43.3-120.0-151.6 154.8 25.6 15.2 5.2 81 94 A V E -eF 45 69A 6 -37,-2.6 -35,-2.6 -2,-0.3 2,-0.8 -0.869 34.3-149.8 -90.3 109.2 24.8 18.9 5.1 82 95 A F E -eF 46 68A 45 -14,-3.0 -14,-2.2 -2,-0.9 -35,-0.2 -0.729 20.3-128.4 -86.5 110.4 24.7 19.6 8.8 83 96 A A E + F 0 67A 5 -37,-2.8 -35,-0.3 -2,-0.8 -16,-0.3 -0.351 37.5 168.5 -71.2 137.1 22.2 22.5 9.1 84 97 A R E S+ 0 0 83 -18,-3.2 2,-0.3 1,-0.4 -17,-0.2 0.602 76.0 16.7-107.8 -29.5 23.1 25.7 10.9 85 98 A D E - F 0 66A 90 -19,-2.0 -19,-2.2 2,-0.0 -1,-0.4 -0.993 62.5-178.8-147.2 140.3 20.1 27.7 9.8 86 99 A I E - F 0 65A 7 -2,-0.3 2,-0.4 -35,-0.3 -21,-0.2 -0.993 1.5-177.3-140.6 138.8 16.8 26.7 8.3 87 100 A S E - F 0 64A 53 -23,-2.0 -23,-2.4 -2,-0.4 2,-0.4 -0.991 22.1-136.1-135.4 130.6 13.8 28.9 7.2 88 101 A V E - F 0 63A 64 -2,-0.4 -25,-0.3 -25,-0.2 -31,-0.0 -0.675 30.1-174.3 -81.4 134.1 10.5 27.6 5.8 89 102 A V E - F 0 62A 48 -27,-2.3 -27,-0.5 -2,-0.4 2,-0.0 -0.893 22.8-106.2-128.0 158.0 9.4 29.5 2.8 90 103 A P 0 0 105 0, 0.0 -1,-0.0 0, 0.0 -29,-0.0 -0.261 360.0 360.0 -75.6 168.9 6.3 29.6 0.6 91 104 A E 0 0 189 -29,-0.0 -30,-0.0 -2,-0.0 -2,-0.0 0.797 360.0 360.0 -73.8 360.0 6.0 28.2 -2.9