==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDORIBONUCLEASE 09-DEC-97 5GSP . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR I.ZEGERS,L.WYNS . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5677.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 151 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 150.1 5.9 55.5 5.8 2 2 A a - 0 0 48 1,-0.1 10,-0.2 10,-0.1 3,-0.2 -0.647 360.0-157.1 -84.9 138.2 7.7 52.5 7.3 3 3 A D S S+ 0 0 85 8,-1.7 2,-0.4 1,-0.3 9,-0.2 0.818 91.8 19.8 -78.7 -31.7 6.5 49.0 6.7 4 4 A Y E S-A 11 0A 60 7,-2.2 7,-2.8 -3,-0.1 2,-0.5 -0.997 71.4-163.2-139.1 129.5 8.4 48.0 9.9 5 5 A T E -A 10 0A 47 99,-3.0 99,-1.8 -2,-0.4 2,-0.7 -0.960 6.0-177.3-118.8 112.2 9.5 50.3 12.6 6 6 A b E > -A 9 0A 0 3,-2.3 3,-2.4 -2,-0.5 2,-0.6 -0.862 67.3 -63.0-108.7 94.3 12.2 49.0 15.0 7 7 A G T 3 S- 0 0 42 -2,-0.7 97,-0.1 1,-0.3 84,-0.0 -0.548 120.7 -16.8 66.8-113.0 12.7 51.8 17.5 8 8 A S T 3 S+ 0 0 122 -2,-0.6 2,-0.3 -3,-0.1 -1,-0.3 0.527 115.9 104.7 -99.4 -10.6 14.1 54.6 15.3 9 9 A N E < -A 6 0A 50 -3,-2.4 -3,-2.3 1,-0.0 2,-0.5 -0.577 57.0-154.4 -79.6 132.3 15.0 52.3 12.4 10 10 A a E -A 5 0A 74 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.924 14.3-179.2-111.0 121.5 12.7 52.5 9.4 11 11 A Y E -A 4 0A 4 -7,-2.8 -7,-2.2 -2,-0.5 -8,-1.7 -0.947 13.2-153.7-124.4 142.0 12.4 49.5 7.0 12 12 A S > - 0 0 32 -2,-0.4 4,-1.7 -9,-0.2 5,-0.1 -0.502 38.5-101.1 -99.0 174.3 10.4 48.9 3.9 13 13 A S H > S+ 0 0 60 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.855 124.2 55.1 -64.5 -35.8 9.2 45.5 2.6 14 14 A S H > S+ 0 0 75 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.856 104.3 54.1 -66.6 -34.5 12.0 45.5 0.0 15 15 A D H > S+ 0 0 59 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.922 112.5 44.3 -62.4 -45.7 14.6 46.0 2.9 16 16 A V H X S+ 0 0 2 -4,-1.7 4,-2.9 2,-0.2 -2,-0.2 0.920 112.1 50.6 -66.0 -46.0 13.1 43.0 4.6 17 17 A S H X S+ 0 0 73 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.871 110.8 50.2 -60.6 -40.5 13.0 40.8 1.5 18 18 A T H X S+ 0 0 80 -4,-2.1 4,-1.5 2,-0.2 -1,-0.2 0.934 113.9 43.4 -64.7 -46.4 16.6 41.6 0.6 19 19 A A H X S+ 0 0 7 -4,-1.9 4,-2.1 1,-0.2 -2,-0.2 0.932 114.3 51.5 -64.5 -45.3 17.9 40.7 4.1 20 20 A Q H X S+ 0 0 17 -4,-2.9 4,-2.8 1,-0.2 5,-0.2 0.889 105.9 54.4 -59.3 -44.2 15.7 37.6 4.3 21 21 A A H X S+ 0 0 57 -4,-2.3 4,-1.8 1,-0.2 -1,-0.2 0.888 109.6 47.4 -59.2 -40.9 17.0 36.3 0.9 22 22 A A H X S+ 0 0 27 -4,-1.5 4,-1.9 2,-0.2 -1,-0.2 0.914 113.7 46.8 -67.6 -45.1 20.6 36.5 2.1 23 23 A G H X S+ 0 0 0 -4,-2.1 4,-2.1 1,-0.2 -2,-0.2 0.908 111.9 49.8 -64.6 -43.5 19.9 34.8 5.4 24 24 A Y H X S+ 0 0 39 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.868 107.6 54.9 -63.8 -37.2 17.9 32.0 3.8 25 25 A K H X S+ 0 0 112 -4,-1.8 4,-2.1 -5,-0.2 -1,-0.2 0.933 109.4 46.8 -60.6 -48.0 20.7 31.4 1.2 26 26 A L H X>S+ 0 0 28 -4,-1.9 5,-2.6 1,-0.2 4,-0.6 0.895 111.0 53.3 -60.6 -41.0 23.2 30.9 4.0 27 27 A H H ><5S+ 0 0 41 -4,-2.1 3,-0.9 1,-0.2 -2,-0.2 0.926 109.3 48.2 -59.8 -47.2 20.8 28.6 5.8 28 28 A E H 3<5S+ 0 0 121 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.863 112.4 47.8 -61.3 -42.2 20.4 26.5 2.7 29 29 A D H 3<5S- 0 0 81 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.490 111.3-120.7 -79.0 -4.6 24.1 26.2 2.1 30 30 A G T <<5 + 0 0 68 -3,-0.9 2,-0.3 -4,-0.6 -3,-0.2 0.868 69.7 129.3 66.8 37.1 24.7 25.3 5.8 31 31 A E < - 0 0 115 -5,-2.6 2,-0.3 -6,-0.1 -1,-0.2 -0.816 39.0-161.7-121.6 160.6 27.0 28.3 6.2 32 32 A T - 0 0 75 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.928 4.7-151.7-138.9 161.9 27.2 31.2 8.8 33 33 A V B > +B 38 0B 39 5,-2.5 5,-2.7 -2,-0.3 37,-0.2 -0.967 55.1 27.3-134.6 149.4 28.7 34.6 9.1 34 34 A G T > 5S- 0 0 31 -2,-0.3 3,-1.3 35,-0.3 38,-0.1 0.070 91.4 -77.5 87.2 163.6 29.8 36.6 12.2 35 35 A S T 3 5S+ 0 0 127 1,-0.3 -1,-0.2 36,-0.1 35,-0.0 0.686 131.1 53.0 -72.2 -19.0 31.1 35.6 15.6 36 36 A N T 3 5S- 0 0 102 -3,-0.2 -1,-0.3 4,-0.0 -2,-0.1 0.268 113.5-119.9 -98.4 9.6 27.5 34.8 16.7 37 37 A S T < 5 - 0 0 54 -3,-1.3 -3,-0.2 1,-0.2 -2,-0.1 0.957 36.0-130.2 51.0 76.8 27.0 32.5 13.7 38 38 A Y B + 0 0 32 1,-0.1 3,-1.0 2,-0.1 -2,-0.0 0.925 44.1 161.7 62.6 48.1 10.8 32.1 20.3 45 45 A Y T 3 S+ 0 0 197 1,-0.3 -1,-0.1 2,-0.1 54,-0.0 0.802 72.3 65.1 -65.0 -28.4 11.1 32.2 24.1 46 46 A E T 3 S- 0 0 57 1,-0.0 -1,-0.3 55,-0.0 -2,-0.1 0.755 105.6-132.4 -64.9 -27.7 9.2 35.5 23.8 47 47 A G < - 0 0 49 -3,-1.0 -2,-0.1 1,-0.2 -3,-0.1 0.869 32.7-176.2 77.4 38.1 6.2 33.6 22.6 48 48 A F - 0 0 32 1,-0.1 2,-1.7 53,-0.0 -1,-0.2 -0.378 33.1-117.4 -67.3 146.3 5.3 35.8 19.6 49 49 A D - 0 0 159 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.578 42.2-176.1 -85.2 74.4 2.1 34.8 17.7 50 50 A F - 0 0 27 -2,-1.7 38,-0.1 1,-0.1 37,-0.1 -0.496 25.5-146.5 -75.2 142.4 3.7 34.0 14.4 51 51 A S S S+ 0 0 127 36,-0.4 2,-0.3 -2,-0.2 -1,-0.1 0.571 78.6 65.8 -82.8 -14.7 1.4 33.0 11.5 52 52 A V S S- 0 0 28 35,-0.1 -2,-0.1 1,-0.1 2,-0.1 -0.760 89.6 -96.5-109.8 159.5 3.9 30.6 9.9 53 53 A S - 0 0 88 -2,-0.3 29,-0.3 1,-0.1 30,-0.2 -0.324 48.3 -89.4 -75.0 153.3 5.3 27.3 11.2 54 54 A S S S+ 0 0 84 27,-0.1 2,-0.2 -4,-0.1 -1,-0.1 -0.295 79.8 91.4 -81.7 172.7 8.6 26.7 13.1 55 55 A P - 0 0 44 0, 0.0 27,-0.7 0, 0.0 2,-0.3 0.535 65.6-163.3 -69.2 154.8 11.5 26.1 13.1 56 56 A Y E -CD 42 81C 28 -14,-0.6 -14,-2.6 25,-0.2 2,-0.4 -0.848 9.8-162.0-112.2 150.7 12.5 29.8 13.0 57 57 A Y E -CD 41 80C 30 23,-2.6 23,-2.2 -2,-0.3 2,-0.4 -0.981 10.0-141.9-132.6 140.0 15.8 31.4 12.1 58 58 A E E +CD 40 79C 17 -18,-2.7 -18,-1.3 -2,-0.4 21,-0.2 -0.849 18.9 175.7-106.8 143.2 17.1 34.9 12.9 59 59 A W E - D 0 78C 2 19,-2.0 19,-3.1 -2,-0.4 -36,-0.1 -0.992 33.3-108.3-143.7 133.0 19.1 37.0 10.6 60 60 A P E - D 0 77C 1 0, 0.0 8,-0.5 0, 0.0 2,-0.4 -0.328 23.1-159.9 -66.7 142.1 20.2 40.7 11.2 61 61 A I - 0 0 7 15,-1.6 2,-0.4 12,-0.2 15,-0.4 -0.987 16.5-143.5-119.9 129.3 18.7 43.5 9.2 62 62 A L > - 0 0 36 4,-0.6 3,-1.5 -2,-0.4 12,-0.1 -0.834 15.9-143.5-103.4 137.9 20.8 46.7 9.1 63 63 A S T 3 S+ 0 0 83 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.710 100.3 68.9 -64.8 -20.8 19.6 50.3 9.1 64 64 A S T 3 S- 0 0 80 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.726 110.1-121.0 -70.0 -23.3 22.5 51.1 6.7 65 65 A G S < S+ 0 0 55 -3,-1.5 2,-0.2 1,-0.4 -2,-0.1 0.396 73.1 123.9 96.0 -3.3 20.7 49.1 4.0 66 66 A D - 0 0 116 1,-0.1 -4,-0.6 -5,-0.0 -1,-0.4 -0.499 68.6-107.8 -86.0 159.6 23.7 46.8 3.6 67 67 A V - 0 0 64 -2,-0.2 -6,-0.1 -6,-0.1 -1,-0.1 -0.736 44.9 -98.0 -87.3 136.6 23.3 43.0 4.0 68 68 A Y + 0 0 8 -8,-0.5 3,-0.1 -2,-0.4 -1,-0.1 -0.304 50.8 161.6 -55.6 129.4 24.9 41.6 7.2 69 69 A S - 0 0 106 1,-0.5 -35,-0.3 -2,-0.0 2,-0.2 0.242 60.4 -58.7-134.3 10.8 28.4 40.3 6.5 70 70 A G S S+ 0 0 31 -37,-0.2 -1,-0.5 1,-0.1 2,-0.1 -0.569 90.3 68.8 130.0 167.3 29.9 40.2 10.0 71 71 A G S S+ 0 0 57 -2,-0.2 -36,-0.1 -3,-0.1 -1,-0.1 -0.468 98.0 4.5 84.8-161.7 30.7 42.4 13.0 72 72 A S - 0 0 106 1,-0.2 -2,-0.1 -2,-0.1 3,-0.1 -0.336 59.5-158.6 -60.1 127.0 28.0 44.1 15.1 73 73 A P - 0 0 18 0, 0.0 3,-0.3 0, 0.0 -12,-0.2 0.516 29.3-139.9 -84.4 -5.9 24.6 42.9 14.0 74 74 A G - 0 0 42 1,-0.2 -12,-0.1 -14,-0.1 17,-0.0 -0.317 36.4 -66.7 75.9-163.6 22.8 45.8 15.6 75 75 A A S S+ 0 0 27 -69,-0.1 17,-1.8 -3,-0.1 2,-0.3 0.578 102.9 87.2-102.8 -9.5 19.5 45.4 17.4 76 76 A D E + E 0 91C 2 -15,-0.4 -15,-1.6 -3,-0.3 2,-0.3 -0.711 47.8 177.6-101.9 146.2 17.2 44.3 14.5 77 77 A R E -DE 60 90C 9 13,-2.7 13,-2.2 -2,-0.3 2,-0.4 -0.977 23.7-142.1-142.7 148.3 16.4 40.9 13.1 78 78 A V E -DE 59 89C 0 -19,-3.1 -19,-2.0 -2,-0.3 2,-0.5 -0.898 21.7-151.3-105.7 137.2 14.2 39.3 10.4 79 79 A V E +DE 58 88C 0 9,-2.8 8,-3.1 -2,-0.4 9,-1.5 -0.974 21.9 169.1-113.7 121.1 12.8 35.9 11.4 80 80 A F E -DE 57 86C 0 -23,-2.2 -23,-2.6 -2,-0.5 6,-0.2 -0.822 20.1-134.4-124.4 167.5 12.1 33.4 8.7 81 81 A N E > -D 56 0C 3 4,-1.6 3,-1.8 -2,-0.3 -25,-0.2 -0.448 40.5 -78.4-112.0-169.9 11.2 29.7 8.6 82 82 A E T 3 S+ 0 0 73 -27,-0.7 -26,-0.1 1,-0.3 -28,-0.1 0.772 128.2 50.8 -59.4 -30.5 12.2 26.5 6.7 83 83 A N T 3 S- 0 0 117 -30,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.185 119.6-106.7 -94.6 15.7 10.1 27.5 3.7 84 84 A N S < S+ 0 0 63 -3,-1.8 2,-0.4 1,-0.2 -2,-0.1 0.886 70.2 151.7 60.6 38.1 11.6 31.0 3.5 85 85 A Q - 0 0 87 -32,-0.1 -4,-1.6 -65,-0.0 2,-0.4 -0.868 50.9-115.8-101.0 135.5 8.4 32.5 4.9 86 86 A L E +E 80 0C 57 -2,-0.4 -6,-0.2 -6,-0.2 -35,-0.1 -0.588 30.9 178.9 -73.1 121.0 8.6 35.7 6.8 87 87 A A E - 0 0 16 -8,-3.1 -36,-0.4 -2,-0.4 2,-0.3 0.800 57.2 -73.2 -88.7 -37.0 7.6 35.1 10.4 88 88 A G E -E 79 0C 8 -9,-1.5 -9,-2.8 -38,-0.1 2,-0.5 -0.957 37.9 -88.5 163.7 179.5 8.3 38.7 11.4 89 89 A V E +E 78 0C 3 -2,-0.3 14,-2.7 14,-0.2 2,-0.3 -0.990 44.2 179.0-122.9 123.6 10.7 41.5 12.2 90 90 A I E -EF 77 102C 0 -13,-2.2 -13,-2.7 -2,-0.5 2,-0.3 -0.826 8.9-161.5-124.5 165.5 11.9 41.9 15.8 91 91 A T E -EF 76 101C 2 10,-2.9 10,-2.0 -2,-0.3 -15,-0.2 -0.989 30.3-142.4-150.1 152.9 14.2 44.1 17.8 92 92 A H S > S+ 0 0 40 -17,-1.8 3,-1.9 -2,-0.3 2,-0.2 0.630 76.1 109.5 -82.3 -19.2 16.2 44.4 21.1 93 93 A T T 3 S+ 0 0 61 1,-0.3 -86,-0.2 -18,-0.2 -2,-0.1 -0.431 88.4 8.9 -62.9 122.6 15.3 48.1 21.1 94 94 A G T 3 S+ 0 0 80 1,-0.3 2,-0.4 -2,-0.2 -1,-0.3 0.600 108.6 106.2 82.4 11.0 12.8 48.8 23.9 95 95 A A S < S- 0 0 19 -3,-1.9 -1,-0.3 4,-0.2 6,-0.1 -0.960 75.1-109.0-123.3 140.7 13.2 45.3 25.4 96 96 A S S > S- 0 0 90 -2,-0.4 3,-2.1 4,-0.1 -3,-0.0 -0.396 75.2 -28.9 -71.7 144.1 15.0 44.5 28.6 97 97 A G T 3 S- 0 0 68 1,-0.3 -2,-0.2 -2,-0.1 0, 0.0 -0.232 126.0 -23.4 55.7-127.8 18.4 42.7 28.4 98 98 A N T 3 S+ 0 0 141 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.087 105.4 120.2-103.9 21.2 18.6 40.4 25.5 99 99 A N < - 0 0 83 -3,-2.1 2,-0.3 -7,-0.1 -4,-0.2 -0.279 53.5-134.4 -78.2 168.4 14.9 40.0 25.0 100 100 A F - 0 0 16 -6,-0.1 2,-0.3 -2,-0.0 -8,-0.2 -0.868 15.0-168.5-124.3 159.6 13.0 41.0 21.8 101 101 A V E -F 91 0C 56 -10,-2.0 -10,-2.9 -2,-0.3 2,-0.2 -0.921 36.6 -96.5-138.5 156.3 9.9 42.9 21.0 102 102 A E E -F 90 0C 98 -2,-0.3 2,-0.3 -12,-0.2 -12,-0.3 -0.505 33.0-117.7 -78.4 147.6 8.2 43.1 17.6 103 103 A b 0 0 13 -14,-2.7 -14,-0.2 -2,-0.2 -97,-0.2 -0.663 360.0 360.0 -80.5 139.1 8.8 46.0 15.3 104 104 A T 0 0 151 -99,-1.8 -99,-3.0 -2,-0.3 -1,-0.1 -0.349 360.0 360.0 -85.7 360.0 5.6 47.9 14.6