==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDORIBONUCLEASE 09-DEC-97 6GSP . COMPND 2 MOLECULE: RIBONUCLEASE T1; . SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; . AUTHOR I.ZEGERS,L.WYNS . 104 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5746.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 151 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 153.9 6.0 55.5 5.8 2 2 A a - 0 0 48 1,-0.2 10,-0.2 10,-0.1 3,-0.2 -0.631 360.0-161.3 -85.4 137.0 7.7 52.5 7.4 3 3 A D S S+ 0 0 84 8,-1.8 2,-0.4 1,-0.4 9,-0.2 0.833 91.8 18.4 -79.8 -33.9 6.5 49.0 6.8 4 4 A Y E S-A 11 0A 63 7,-2.1 7,-2.7 -3,-0.1 2,-0.5 -0.998 71.8-163.6-138.7 128.7 8.4 48.0 9.9 5 5 A T E -A 10 0A 45 99,-3.1 99,-1.8 -2,-0.4 2,-0.8 -0.950 7.0-179.1-118.6 110.0 9.6 50.4 12.6 6 6 A b E > -A 9 0A 0 3,-2.3 3,-2.0 -2,-0.5 2,-0.5 -0.808 67.5 -65.0-108.6 88.6 12.2 49.0 15.0 7 7 A G T 3 S- 0 0 46 -2,-0.8 97,-0.1 1,-0.3 84,-0.0 -0.589 119.6 -13.7 70.2-119.7 12.8 51.9 17.4 8 8 A S T 3 S+ 0 0 128 -2,-0.5 2,-0.4 -3,-0.1 -1,-0.3 0.560 116.5 102.1 -89.5 -13.5 14.2 54.7 15.3 9 9 A N E < -A 6 0A 50 -3,-2.0 -3,-2.3 -7,-0.0 2,-0.5 -0.600 56.9-158.9 -80.8 130.9 15.0 52.4 12.4 10 10 A a E -A 5 0A 73 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.937 11.3-176.5-111.8 123.4 12.6 52.4 9.4 11 11 A Y E -A 4 0A 5 -7,-2.7 -7,-2.1 -2,-0.5 -8,-1.8 -0.949 12.7-150.9-124.4 142.9 12.4 49.5 7.0 12 12 A S > - 0 0 35 -2,-0.4 4,-1.6 -9,-0.2 5,-0.1 -0.450 37.2-102.0 -96.7 176.2 10.5 48.9 3.8 13 13 A S H > S+ 0 0 60 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.868 124.1 53.7 -67.0 -35.8 9.3 45.5 2.5 14 14 A S H > S+ 0 0 77 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.811 104.3 55.3 -68.7 -29.3 12.1 45.5 0.1 15 15 A D H > S+ 0 0 61 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.929 112.6 42.9 -66.5 -44.5 14.6 46.0 2.9 16 16 A V H X S+ 0 0 2 -4,-1.6 4,-2.9 2,-0.2 -2,-0.2 0.914 112.9 51.2 -68.0 -44.3 13.2 43.0 4.7 17 17 A S H X S+ 0 0 73 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.870 110.5 49.8 -60.5 -40.9 13.0 40.8 1.5 18 18 A T H X S+ 0 0 83 -4,-1.9 4,-1.3 2,-0.2 -1,-0.2 0.902 113.7 45.0 -66.2 -41.2 16.6 41.6 0.6 19 19 A A H X S+ 0 0 8 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.931 113.3 50.4 -67.6 -45.9 17.8 40.7 4.2 20 20 A Q H X S+ 0 0 17 -4,-2.9 4,-2.8 1,-0.2 5,-0.3 0.905 107.2 52.9 -59.4 -46.7 15.7 37.5 4.3 21 21 A A H X S+ 0 0 56 -4,-2.2 4,-1.8 1,-0.2 -1,-0.2 0.871 109.9 50.0 -59.1 -37.0 17.0 36.2 0.9 22 22 A A H X S+ 0 0 25 -4,-1.3 4,-1.6 2,-0.2 -1,-0.2 0.936 114.1 43.0 -67.2 -48.8 20.6 36.7 2.1 23 23 A G H X S+ 0 0 0 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.860 113.6 50.8 -66.6 -38.0 20.0 34.8 5.4 24 24 A Y H X S+ 0 0 35 -4,-2.8 4,-2.4 2,-0.2 -1,-0.2 0.890 106.5 54.8 -67.5 -40.6 18.0 32.0 3.9 25 25 A K H X S+ 0 0 118 -4,-1.8 4,-2.1 -5,-0.3 -1,-0.2 0.921 110.0 47.1 -57.5 -45.5 20.6 31.4 1.2 26 26 A L H X>S+ 0 0 30 -4,-1.6 5,-2.6 1,-0.2 4,-0.9 0.908 109.7 53.8 -63.1 -41.9 23.2 30.9 3.9 27 27 A H H <5S+ 0 0 41 -4,-2.1 3,-0.3 3,-0.2 -1,-0.2 0.883 108.5 50.0 -59.7 -41.2 20.9 28.7 5.8 28 28 A E H <5S+ 0 0 122 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.923 111.5 45.5 -64.2 -48.7 20.4 26.4 2.7 29 29 A D H <5S- 0 0 79 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.590 113.5-120.3 -71.6 -9.3 24.2 26.1 2.0 30 30 A G T <5 + 0 0 65 -4,-0.9 2,-0.3 1,-0.3 -3,-0.2 0.912 67.6 133.8 70.7 42.5 24.6 25.4 5.7 31 31 A E < - 0 0 114 -5,-2.6 2,-0.3 -6,-0.1 -1,-0.3 -0.849 37.8-157.5-123.6 160.8 27.0 28.3 6.3 32 32 A T - 0 0 79 -2,-0.3 2,-0.3 -3,-0.1 5,-0.1 -0.927 3.2-155.4-136.8 158.2 27.2 31.1 8.8 33 33 A V B > +B 38 0B 38 5,-2.4 5,-2.8 -2,-0.3 37,-0.2 -0.977 55.1 27.6-133.8 145.9 28.7 34.6 9.1 34 34 A G T > 5S- 0 0 32 -2,-0.3 3,-0.7 35,-0.3 38,-0.1 -0.098 90.5 -78.8 95.1 167.6 29.8 36.6 12.2 35 35 A S T 3 5S+ 0 0 124 1,-0.2 -1,-0.2 36,-0.2 -3,-0.0 0.696 131.1 51.1 -77.4 -22.2 31.1 35.5 15.6 36 36 A N T 3 5S- 0 0 104 -3,-0.2 -1,-0.2 4,-0.0 -2,-0.1 0.287 115.5-118.8 -96.7 8.4 27.6 34.7 16.8 37 37 A S T < 5 - 0 0 54 -3,-0.7 -3,-0.2 1,-0.2 -2,-0.1 0.974 35.2-125.5 55.5 79.3 27.0 32.6 13.7 38 38 A Y B + 0 0 31 1,-0.1 3,-1.6 2,-0.1 -2,-0.0 0.894 43.5 162.5 61.9 44.1 10.8 32.2 20.3 45 45 A Y T 3 S+ 0 0 200 1,-0.3 -1,-0.1 2,-0.1 54,-0.0 0.780 72.4 65.4 -60.4 -27.3 11.1 32.2 24.1 46 46 A E T 3 S- 0 0 59 1,-0.0 -1,-0.3 55,-0.0 -2,-0.1 0.723 105.1-134.0 -66.9 -24.9 9.2 35.5 23.8 47 47 A G < - 0 0 49 -3,-1.6 -2,-0.1 1,-0.1 2,-0.1 0.913 32.4-176.9 72.0 43.1 6.2 33.5 22.6 48 48 A F - 0 0 32 1,-0.1 2,-1.4 -4,-0.0 -1,-0.1 -0.421 33.9-113.7 -70.9 150.6 5.3 35.7 19.6 49 49 A D - 0 0 158 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.644 42.7-174.4 -86.9 81.5 2.1 34.8 17.7 50 50 A F - 0 0 28 -2,-1.4 38,-0.1 1,-0.1 37,-0.1 -0.531 24.8-147.6 -80.4 145.3 3.7 33.8 14.3 51 51 A S S S+ 0 0 128 36,-0.3 2,-0.3 -2,-0.2 -1,-0.1 0.619 79.8 61.6 -83.6 -17.9 1.5 33.0 11.3 52 52 A V S S- 0 0 27 35,-0.1 2,-0.1 33,-0.1 -2,-0.1 -0.729 90.6 -97.3-109.0 161.1 3.9 30.5 9.8 53 53 A S - 0 0 90 -2,-0.3 29,-0.3 1,-0.1 32,-0.1 -0.375 48.4 -85.7 -78.7 154.9 5.3 27.2 11.3 54 54 A S S S+ 0 0 83 27,-0.1 2,-0.1 -2,-0.1 -1,-0.1 -0.224 79.0 92.1 -78.5 173.6 8.6 26.7 13.0 55 55 A P - 0 0 41 0, 0.0 27,-0.7 0, 0.0 2,-0.3 0.530 64.1-162.5 -70.9 154.0 11.6 26.1 13.1 56 56 A Y E -CD 42 81C 27 -14,-0.6 -14,-2.4 25,-0.2 2,-0.4 -0.815 9.2-163.2-108.6 149.7 12.5 29.8 13.0 57 57 A Y E -CD 41 80C 32 23,-2.6 23,-2.0 -2,-0.3 2,-0.4 -0.997 10.8-142.0-133.3 133.8 15.9 31.3 12.1 58 58 A E E +CD 40 79C 18 -18,-2.8 -18,-1.2 -2,-0.4 21,-0.2 -0.792 19.7 174.1-100.5 144.0 17.1 34.9 13.0 59 59 A W E - D 0 78C 2 19,-2.0 19,-3.3 -2,-0.4 2,-0.1 -0.991 33.5-111.4-144.4 129.9 19.2 37.0 10.6 60 60 A P E - D 0 77C 1 0, 0.0 8,-0.5 0, 0.0 2,-0.5 -0.404 20.6-154.9 -70.2 142.1 20.1 40.7 11.3 61 61 A I - 0 0 7 15,-1.2 2,-0.4 12,-0.2 15,-0.4 -0.967 17.1-141.2-114.1 129.3 18.7 43.5 9.2 62 62 A L > - 0 0 37 4,-0.6 3,-1.5 -2,-0.5 12,-0.1 -0.810 13.0-143.1-100.4 138.4 20.9 46.6 9.1 63 63 A S T 3 S+ 0 0 83 -2,-0.4 -53,-0.1 1,-0.3 -1,-0.1 0.675 99.8 67.8 -66.1 -19.9 19.7 50.3 9.1 64 64 A S T 3 S- 0 0 79 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.656 111.7-118.3 -73.5 -18.8 22.5 51.2 6.7 65 65 A G S < S+ 0 0 53 -3,-1.5 2,-0.2 1,-0.4 -2,-0.1 0.463 73.5 127.6 92.9 0.5 20.7 49.1 4.0 66 66 A D - 0 0 115 1,-0.0 -4,-0.6 -5,-0.0 2,-0.4 -0.531 66.7-109.4 -86.6 157.7 23.7 46.8 3.7 67 67 A V - 0 0 70 -2,-0.2 -6,-0.1 -6,-0.1 -48,-0.1 -0.747 44.5-101.7 -88.0 131.8 23.4 43.0 3.9 68 68 A Y + 0 0 8 -8,-0.5 3,-0.1 -2,-0.4 -1,-0.1 -0.264 50.3 160.7 -54.1 134.2 25.0 41.7 7.2 69 69 A S - 0 0 104 1,-0.5 -35,-0.3 -36,-0.0 2,-0.2 0.186 59.9 -50.6-142.3 16.6 28.5 40.2 6.6 70 70 A G S S+ 0 0 33 -37,-0.2 -1,-0.5 1,-0.1 2,-0.1 -0.526 91.2 60.5 129.8 163.0 30.0 40.2 10.1 71 71 A G S S+ 0 0 56 -2,-0.2 -36,-0.2 -3,-0.1 -1,-0.1 -0.419 98.6 7.2 83.1-162.0 30.7 42.4 13.1 72 72 A S - 0 0 109 1,-0.2 -2,-0.1 -2,-0.1 3,-0.1 -0.308 59.1-160.4 -57.4 123.9 28.1 44.1 15.2 73 73 A P - 0 0 18 0, 0.0 3,-0.3 0, 0.0 -12,-0.2 0.508 29.4-140.1 -84.0 -6.5 24.6 42.9 14.1 74 74 A G - 0 0 44 1,-0.2 -12,-0.1 -14,-0.1 17,-0.0 -0.335 35.8 -65.5 77.5-160.4 22.8 45.8 15.6 75 75 A A S S+ 0 0 27 -14,-0.1 17,-1.7 -69,-0.1 2,-0.3 0.606 103.0 85.4-104.9 -12.4 19.5 45.4 17.4 76 76 A D E + E 0 91C 3 -15,-0.4 -15,-1.2 -3,-0.3 2,-0.3 -0.646 47.8 176.9-100.1 149.9 17.2 44.3 14.6 77 77 A R E -DE 60 90C 8 13,-2.7 13,-2.2 -17,-0.3 2,-0.4 -0.990 23.8-141.0-146.6 149.3 16.4 40.9 13.1 78 78 A V E -DE 59 89C 0 -19,-3.3 -19,-2.0 -2,-0.3 2,-0.5 -0.897 21.5-150.4-106.6 139.3 14.3 39.3 10.5 79 79 A V E +DE 58 88C 0 9,-3.1 8,-3.4 -2,-0.4 9,-1.6 -0.971 22.7 167.1-115.5 121.0 12.8 35.9 11.4 80 80 A F E -DE 57 86C 0 -23,-2.0 -23,-2.6 -2,-0.5 6,-0.2 -0.826 20.4-137.0-125.4 166.3 12.1 33.4 8.7 81 81 A N E > -D 56 0C 5 4,-1.4 3,-1.8 -2,-0.3 -25,-0.2 -0.442 41.8 -74.4-113.7-169.5 11.3 29.7 8.6 82 82 A E T 3 S+ 0 0 77 -27,-0.7 -28,-0.1 1,-0.3 -26,-0.1 0.780 127.8 50.4 -57.5 -30.7 12.3 26.6 6.7 83 83 A N T 3 S- 0 0 115 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.199 119.6-104.9 -94.3 16.3 10.2 27.6 3.6 84 84 A N S < S+ 0 0 64 -3,-1.8 2,-0.5 1,-0.2 -2,-0.1 0.936 71.0 151.8 60.6 43.4 11.6 31.1 3.4 85 85 A Q - 0 0 84 -32,-0.1 -4,-1.4 -4,-0.1 2,-0.4 -0.942 51.1-115.9-107.8 130.5 8.5 32.5 4.9 86 86 A L E +E 80 0C 56 -2,-0.5 -6,-0.2 -6,-0.2 -35,-0.2 -0.495 31.9 177.5 -67.0 119.8 8.7 35.7 6.8 87 87 A A E - 0 0 14 -8,-3.4 -36,-0.3 -2,-0.4 2,-0.3 0.779 57.8 -67.1 -90.8 -35.3 7.7 35.1 10.4 88 88 A G E -E 79 0C 9 -9,-1.6 -9,-3.1 -38,-0.1 2,-0.5 -0.939 37.9 -94.9 164.1 174.2 8.4 38.6 11.6 89 89 A V E +E 78 0C 4 -2,-0.3 14,-2.5 -11,-0.2 2,-0.3 -0.986 44.1 178.4-120.8 121.2 10.8 41.5 12.3 90 90 A I E -EF 77 102C 0 -13,-2.2 -13,-2.7 -2,-0.5 2,-0.3 -0.806 9.5-162.4-123.3 166.1 12.0 41.9 15.8 91 91 A T E -EF 76 101C 2 10,-2.7 10,-1.7 -2,-0.3 -15,-0.2 -0.988 31.3-139.8-150.7 154.0 14.3 44.1 17.9 92 92 A H S > S+ 0 0 45 -17,-1.7 3,-1.7 -2,-0.3 2,-0.3 0.611 76.6 109.2 -81.1 -16.6 16.3 44.4 21.1 93 93 A T T 3 S+ 0 0 61 1,-0.3 -86,-0.1 -18,-0.2 -2,-0.1 -0.467 87.3 9.1 -67.0 125.6 15.2 48.1 21.2 94 94 A G T 3 S+ 0 0 80 1,-0.3 2,-0.4 -2,-0.3 -1,-0.3 0.622 109.6 107.2 80.1 12.6 12.7 48.9 23.9 95 95 A A S < S- 0 0 23 -3,-1.7 -1,-0.3 4,-0.2 6,-0.1 -0.966 75.4-102.4-126.2 143.3 13.2 45.4 25.4 96 96 A S S > S- 0 0 94 -2,-0.4 3,-2.8 4,-0.1 -3,-0.0 -0.298 75.0 -40.5 -63.2 142.5 15.0 44.4 28.6 97 97 A G T 3 S- 0 0 70 1,-0.3 -2,-0.2 -2,-0.0 0, 0.0 -0.131 126.0 -17.4 42.9-117.4 18.5 42.8 28.4 98 98 A N T 3 S+ 0 0 139 2,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.147 105.4 117.2-106.6 19.8 18.6 40.4 25.5 99 99 A N < - 0 0 88 -3,-2.8 2,-0.3 -7,-0.1 -4,-0.2 -0.209 54.1-135.2 -76.9 174.3 14.9 40.0 25.0 100 100 A F - 0 0 17 -6,-0.1 2,-0.3 -10,-0.0 -8,-0.2 -0.872 14.4-167.2-129.2 163.0 13.1 41.1 21.9 101 101 A V E -F 91 0C 55 -10,-1.7 -10,-2.7 -2,-0.3 2,-0.2 -0.919 36.1 -95.6-141.6 158.5 9.8 42.9 21.0 102 102 A E E -F 90 0C 102 -2,-0.3 2,-0.3 -12,-0.2 -12,-0.2 -0.517 34.0-117.5 -79.9 148.8 8.2 43.1 17.6 103 103 A b 0 0 15 -14,-2.5 -97,-0.2 -2,-0.2 -14,-0.2 -0.652 360.0 360.0 -82.1 139.0 8.8 46.0 15.3 104 104 A T 0 0 154 -99,-1.8 -99,-3.1 -2,-0.3 -1,-0.1 -0.354 360.0 360.0 -81.2 360.0 5.6 48.0 14.6