==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 08-FEB-02 1GVD . COMPND 2 MOLECULE: MYB PROTO-ONCOGENE PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.H.TAHIROV,K.OGATA . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4128.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 90 A L 0 0 158 0, 0.0 2,-0.4 0, 0.0 34,-0.1 0.000 360.0 360.0 360.0 152.1 19.1 8.5 17.9 2 91 A I - 0 0 155 32,-0.0 2,-0.3 34,-0.0 34,-0.1 -0.985 360.0-169.2-126.0 126.2 21.6 10.7 16.1 3 92 A K - 0 0 83 32,-1.5 3,-0.1 -2,-0.4 32,-0.0 -0.807 5.5-171.9-112.3 155.8 20.7 13.1 13.2 4 93 A G + 0 0 49 1,-0.3 -1,-0.2 -2,-0.3 0, 0.0 0.523 61.9 31.6-108.5-105.4 23.0 15.0 10.9 5 94 A P S S- 0 0 123 0, 0.0 -1,-0.3 0, 0.0 2,-0.3 -0.208 82.5-115.6 -57.6 145.3 21.7 17.6 8.4 6 95 A W - 0 0 43 -3,-0.1 2,-0.2 4,-0.0 0, 0.0 -0.651 24.1-142.3 -85.4 138.6 18.6 19.5 9.4 7 96 A T > - 0 0 66 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.571 25.1-112.3 -94.0 162.9 15.4 19.2 7.4 8 97 A K H > S+ 0 0 175 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.831 119.2 56.4 -62.8 -31.8 13.0 22.0 6.6 9 98 A E H > S+ 0 0 133 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.906 107.2 47.7 -67.4 -41.3 10.5 20.3 8.9 10 99 A E H > S+ 0 0 8 2,-0.2 4,-2.7 1,-0.2 -2,-0.2 0.910 109.9 52.7 -65.1 -43.2 12.9 20.4 11.8 11 100 A D H X S+ 0 0 19 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.912 109.6 49.1 -59.4 -42.7 13.8 24.0 11.2 12 101 A Q H X S+ 0 0 98 -4,-2.0 4,-1.9 1,-0.2 -1,-0.2 0.914 111.8 48.4 -64.5 -42.0 10.1 24.9 11.3 13 102 A R H X S+ 0 0 131 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.902 109.5 53.0 -64.6 -39.5 9.5 23.0 14.5 14 103 A L H X S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.903 105.7 54.1 -62.9 -40.2 12.6 24.6 16.1 15 104 A I H X S+ 0 0 51 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.939 111.2 45.5 -58.5 -46.3 11.2 28.1 15.2 16 105 A K H X S+ 0 0 126 -4,-1.9 4,-1.9 1,-0.2 -2,-0.2 0.875 111.9 51.6 -65.5 -38.2 8.0 27.2 17.0 17 106 A L H X S+ 0 0 21 -4,-2.4 4,-3.0 2,-0.2 5,-0.4 0.877 109.1 49.6 -68.4 -36.8 9.7 25.8 20.0 18 107 A V H X S+ 0 0 9 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.870 108.4 54.6 -69.5 -33.7 11.9 28.8 20.4 19 108 A Q H < S+ 0 0 142 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.915 115.2 40.3 -63.8 -40.0 8.8 31.0 20.2 20 109 A K H < S+ 0 0 146 -4,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.943 131.7 21.0 -73.1 -49.4 7.3 28.9 23.0 21 110 A Y H < S- 0 0 49 -4,-3.0 3,-0.3 1,-0.2 -3,-0.2 0.628 99.1-126.8 -98.5 -18.1 10.3 28.5 25.3 22 111 A G >< - 0 0 22 -4,-2.4 3,-0.8 -5,-0.4 2,-0.4 -0.117 40.6 -65.7 89.0 166.6 12.7 31.3 24.4 23 112 A P T 3 S+ 0 0 63 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.083 121.8 60.0 -85.5 35.5 16.4 30.9 23.4 24 113 A K T 3 S+ 0 0 169 -2,-0.4 2,-0.5 -3,-0.3 3,-0.2 0.482 82.5 74.2-134.5 -11.7 17.7 29.7 26.8 25 114 A R <> + 0 0 147 -3,-0.8 4,-2.3 1,-0.2 3,-0.3 -0.391 51.8 149.4-102.5 52.8 15.9 26.4 27.5 26 115 A W H > + 0 0 31 -2,-0.5 4,-2.6 1,-0.2 -1,-0.2 0.817 67.5 55.5 -57.1 -36.2 17.7 24.3 24.9 27 116 A S H > S+ 0 0 96 -3,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.906 111.1 44.4 -65.3 -41.1 17.4 21.0 26.9 28 117 A V H 4 S+ 0 0 52 -3,-0.3 4,-0.5 2,-0.2 3,-0.3 0.905 113.7 51.0 -68.9 -42.0 13.6 21.4 27.0 29 118 A I H >< S+ 0 0 0 -4,-2.3 3,-1.7 1,-0.2 -2,-0.2 0.932 107.1 53.4 -60.8 -46.0 13.5 22.3 23.4 30 119 A A H >< S+ 0 0 9 -4,-2.6 3,-1.9 1,-0.3 6,-0.4 0.776 94.2 70.3 -61.7 -27.7 15.6 19.3 22.3 31 120 A K T 3< S+ 0 0 166 -4,-1.1 -1,-0.3 -3,-0.3 -2,-0.2 0.750 99.2 50.6 -61.8 -22.0 13.2 17.0 24.1 32 121 A H T < S+ 0 0 75 -3,-1.7 2,-0.5 -4,-0.5 -1,-0.3 0.372 99.5 72.9 -96.5 1.8 10.7 17.8 21.4 33 122 A L S X S- 0 0 4 -3,-1.9 3,-1.7 3,-0.2 -1,-0.1 -0.909 82.2-132.5-123.5 103.6 13.1 17.1 18.5 34 123 A K T 3 S+ 0 0 148 -2,-0.5 3,-0.1 1,-0.3 -2,-0.1 -0.237 89.3 11.2 -53.7 130.8 13.9 13.4 17.9 35 124 A G T 3 S+ 0 0 12 1,-0.2 -32,-1.5 -34,-0.1 2,-0.3 0.643 104.9 109.4 75.9 15.1 17.6 12.8 17.5 36 125 A R < - 0 0 16 -3,-1.7 2,-0.3 -6,-0.4 -1,-0.2 -0.938 50.1-155.0-125.3 147.7 18.7 16.2 18.6 37 126 A I >> - 0 0 88 -2,-0.3 4,-1.5 -3,-0.1 3,-0.8 -0.767 37.2 -98.6-113.6 163.5 20.5 17.5 21.8 38 127 A G H 3> S+ 0 0 14 -2,-0.3 4,-2.3 1,-0.2 3,-0.2 0.862 118.7 52.6 -48.2 -49.0 20.4 20.9 23.3 39 128 A K H 3> S+ 0 0 133 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.835 105.8 55.0 -62.1 -31.8 23.6 22.3 21.8 40 129 A Q H <> S+ 0 0 57 -3,-0.8 4,-2.2 2,-0.2 -1,-0.2 0.902 109.6 47.1 -67.0 -39.8 22.6 21.3 18.3 41 130 A C H X S+ 0 0 0 -4,-1.5 4,-2.2 2,-0.2 -2,-0.2 0.908 111.0 52.2 -66.4 -42.2 19.4 23.3 18.6 42 131 A R H X S+ 0 0 101 -4,-2.3 4,-2.5 1,-0.2 5,-0.2 0.927 112.2 45.1 -59.5 -47.5 21.3 26.3 20.1 43 132 A E H X S+ 0 0 76 -4,-2.3 4,-2.6 2,-0.2 5,-0.4 0.886 110.4 53.0 -66.9 -38.7 23.8 26.3 17.2 44 133 A R H X>S+ 0 0 54 -4,-2.2 5,-2.2 2,-0.2 4,-1.7 0.913 112.4 47.0 -63.6 -40.2 21.1 25.9 14.5 45 134 A W H <>S+ 0 0 38 -4,-2.2 5,-2.9 3,-0.2 -2,-0.2 0.964 118.5 37.5 -66.1 -53.3 19.2 28.9 16.0 46 135 A H H <5S+ 0 0 85 -4,-2.5 6,-0.4 1,-0.2 -2,-0.2 0.845 125.0 37.4 -71.1 -33.7 22.2 31.2 16.3 47 136 A N H <5S+ 0 0 114 -4,-2.6 -3,-0.2 -5,-0.2 -1,-0.2 0.783 134.2 8.1 -90.5 -27.4 24.0 30.3 13.1 48 137 A H T <5S+ 0 0 100 -4,-1.7 -3,-0.2 -5,-0.4 -2,-0.1 0.770 126.7 38.3-122.8 -45.7 21.2 29.7 10.7 49 138 A L T