==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 26-FEB-97 1GVP . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR S.SU,Y.-G.GAO,H.ZHANG,T.C.TERWILLIGER,A.H.-J.WANG . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6550.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-0.4 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 -89.7 -1.0 19.4 2.9 2 2 A I - 0 0 48 61,-0.1 2,-0.6 1,-0.0 61,-0.5 -0.670 360.0-143.9 -81.9 128.9 -0.5 16.4 5.3 3 3 A K - 0 0 113 33,-0.5 33,-2.7 -2,-0.4 2,-0.4 -0.855 21.1-177.6 -90.5 121.1 0.5 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.9 -2,-0.6 2,-0.4 -0.947 4.5-166.5-119.3 136.7 3.1 15.5 10.4 5 5 A E E -AB 34 60A 59 29,-2.9 29,-2.4 -2,-0.4 2,-0.7 -0.984 15.2-158.0-127.3 126.5 4.5 16.2 13.9 6 6 A I E - B 0 59A 1 53,-2.8 53,-2.2 -2,-0.4 27,-0.1 -0.939 25.4-149.8 -95.6 108.5 7.4 14.6 15.7 7 7 A K > - 0 0 73 -2,-0.7 3,-1.6 51,-0.2 4,-0.2 -0.324 29.8-102.5 -64.8 161.4 6.8 15.3 19.5 8 8 A P G > S+ 0 0 108 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 0.879 124.9 57.2 -53.0 -34.7 9.7 15.7 22.1 9 9 A S G 3 S+ 0 0 109 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.620 103.7 52.9 -71.0 -11.3 9.0 12.0 23.1 10 10 A Q G < S+ 0 0 15 -3,-1.6 22,-0.2 1,-0.2 -1,-0.2 0.274 71.2 108.5-111.2 10.3 9.5 10.8 19.5 11 11 A A < + 0 0 44 -3,-1.0 2,-0.3 -4,-0.2 -1,-0.2 0.554 68.6 71.6 -67.4 -10.0 12.9 12.2 18.8 12 12 A Q - 0 0 142 -3,-0.2 20,-0.4 45,-0.0 2,-0.3 -0.801 66.9-148.3-104.4 149.5 14.7 8.8 19.0 13 13 A F - 0 0 62 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.755 6.4-143.2-108.4 162.9 14.6 5.9 16.6 14 14 A T E -C 30 0A 85 16,-2.2 16,-2.5 -2,-0.3 2,-0.5 -0.848 18.6-128.2-115.6 160.5 14.9 2.2 17.3 15 15 A T E -C 29 0A 73 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.945 13.9-164.2-120.3 130.4 16.7 -0.3 15.1 16 16 A R E -C 28 0A 136 12,-2.9 12,-3.0 -2,-0.5 2,-0.2 -0.856 18.1-171.0-101.4 143.7 15.4 -3.6 13.6 17 17 A S E +C 27 0A 81 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.717 17.5 115.8-132.0 173.0 17.9 -6.1 12.2 18 18 A G E -C 26 0A 26 8,-1.4 8,-2.5 -2,-0.2 2,-0.4 -0.967 45.2 -80.2 164.1-165.1 18.2 -9.3 10.3 19 19 A V E -C 25 0A 93 6,-0.3 5,-0.2 -2,-0.3 4,-0.1 -0.992 29.2-123.4-138.8 130.1 19.4 -11.2 7.3 20 20 A S > - 0 0 34 4,-2.7 3,-2.3 -2,-0.4 -2,-0.0 -0.334 31.0-116.1 -58.2 146.4 18.0 -11.8 3.7 21 21 A R T 3 S+ 0 0 245 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.746 121.4 62.5 -55.5 -23.1 17.4 -15.5 2.5 22 22 A Q T 3 S- 0 0 133 2,-0.1 -1,-0.3 1,-0.0 2,-0.1 0.133 128.6-101.7 -84.1 13.1 20.1 -14.5 0.1 23 23 A G S < S+ 0 0 48 -3,-2.3 -2,-0.1 1,-0.2 -1,-0.0 -0.075 77.0 134.9 93.0 -33.8 22.6 -14.0 3.0 24 24 A K - 0 0 135 -5,-0.2 -4,-2.7 -2,-0.1 2,-0.2 -0.291 48.6-136.3 -60.2 110.5 22.5 -10.1 3.3 25 25 A P E -C 19 0A 100 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.413 23.7-163.5 -61.8 127.6 22.2 -8.4 6.8 26 26 A Y E -C 18 0A 97 -8,-2.5 -8,-1.4 -2,-0.2 2,-0.4 -0.832 13.7-163.9-112.2 160.8 19.8 -5.5 7.0 27 27 A S E -C 17 0A 79 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.999 8.2-170.4-142.0 125.8 19.2 -2.8 9.4 28 28 A L E -C 16 0A 50 -12,-3.0 -12,-2.9 -2,-0.4 2,-0.4 -0.984 10.2-150.5-124.9 129.5 16.1 -0.6 9.6 29 29 A N E -C 15 0A 36 -2,-0.4 20,-2.3 20,-0.3 2,-0.4 -0.790 16.3-170.3 -96.5 130.6 15.5 2.5 11.6 30 30 A E E +CD 14 48A 28 -16,-2.5 -16,-2.2 -2,-0.4 2,-0.3 -0.963 7.3 179.5-124.7 140.7 12.0 3.3 12.8 31 31 A Q E - D 0 47A 2 16,-1.9 16,-3.0 -2,-0.4 2,-0.2 -0.966 21.6-127.0-134.1 149.7 10.5 6.4 14.4 32 32 A L E + D 0 46A 65 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.644 31.0 164.9 -93.0 155.7 7.1 7.3 15.5 33 33 A C E - D 0 45A 0 12,-1.5 12,-2.4 -2,-0.2 2,-0.5 -0.952 34.4-109.4-155.5 171.9 5.1 10.4 14.6 34 34 A Y E -AD 5 44A 81 -29,-2.4 -29,-2.9 -2,-0.3 2,-0.5 -0.964 26.5-167.8-113.4 129.5 1.7 12.0 14.6 35 35 A V E -AD 4 43A 11 8,-2.8 8,-2.9 -2,-0.5 2,-0.9 -0.965 18.3-136.5-118.9 126.8 -0.2 12.5 11.4 36 36 A D + 0 0 66 -33,-2.7 -33,-0.5 -2,-0.5 -2,-0.0 -0.716 28.1 168.7 -84.1 108.8 -3.3 14.6 11.2 37 37 A L - 0 0 108 -2,-0.9 -1,-0.2 4,-0.3 3,-0.1 0.331 65.5 -96.4 -97.5 11.7 -5.8 12.8 9.2 38 38 A G S S+ 0 0 64 1,-0.2 2,-0.1 -3,-0.0 -2,-0.1 0.747 85.6 129.1 80.0 22.2 -8.5 15.2 10.2 39 39 A N S S- 0 0 92 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.290 81.7 -79.3 -87.2-171.9 -9.9 13.0 13.0 40 40 A E S S+ 0 0 178 1,-0.1 -1,-0.0 -2,-0.1 -4,-0.0 0.951 116.8 6.7 -47.3 -55.1 -10.5 14.4 16.7 41 41 A Y S S- 0 0 189 1,-0.1 -2,-0.3 -6,-0.0 -4,-0.3 -0.870 96.3 -85.8-124.3 161.2 -6.8 14.0 17.4 42 42 A P - 0 0 55 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.244 45.6-122.7 -58.5 156.1 -3.7 13.1 15.2 43 43 A V E -D 35 0A 45 -8,-2.9 -8,-2.8 -4,-0.0 2,-0.5 -0.779 18.5-111.2-106.2 151.8 -2.9 9.4 14.7 44 44 A L E -D 34 0A 94 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.714 39.1-179.4 -86.1 128.6 0.3 7.6 15.6 45 45 A V E -D 33 0A 46 -12,-2.4 -12,-1.5 -2,-0.5 2,-0.6 -0.959 23.2-132.7-128.6 136.1 2.2 6.4 12.6 46 46 A K E -D 32 0A 103 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.786 19.0-160.5 -93.3 124.9 5.5 4.5 12.2 47 47 A I E -D 31 0A 4 -16,-3.0 -16,-1.9 -2,-0.6 2,-0.6 -0.795 9.1-149.6 -94.1 136.3 8.1 5.8 9.8 48 48 A T E -D 30 0A 39 -2,-0.3 -18,-0.2 -18,-0.2 -2,-0.0 -0.978 26.2-139.5-104.0 117.3 11.0 3.6 8.4 49 49 A L - 0 0 5 -20,-2.3 -20,-0.3 -2,-0.6 2,-0.2 -0.265 18.0-102.9 -68.7 155.7 13.9 6.0 7.7 50 50 A D > - 0 0 45 1,-0.1 3,-2.0 4,-0.1 -1,-0.1 -0.505 52.4 -75.2 -74.0 155.1 16.1 5.7 4.7 51 51 A E T 3 S+ 0 0 195 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.1 -0.187 117.0 4.8 -44.8 126.9 19.6 4.2 4.8 52 52 A G T 3 S+ 0 0 79 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.446 96.2 120.0 75.2 -0.1 21.9 6.7 6.5 53 53 A Q < - 0 0 57 -3,-2.0 -1,-0.2 1,-0.0 3,-0.1 -0.779 56.9-128.6 -98.2 141.7 19.4 9.5 7.5 54 54 A P - 0 0 100 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.270 38.5 -71.6 -74.8 171.2 19.1 10.4 11.2 55 55 A A - 0 0 26 -44,-0.1 2,-0.3 1,-0.1 -44,-0.1 -0.314 56.4-105.5 -56.4 139.5 15.9 10.6 13.3 56 56 A Y - 0 0 22 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.600 37.4-118.9 -63.3 131.8 13.8 13.6 12.4 57 57 A A - 0 0 58 -2,-0.3 -51,-0.2 1,-0.1 -1,-0.1 -0.401 43.1 -80.4 -66.7 151.8 14.1 16.3 15.1 58 58 A P S S+ 0 0 62 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.192 88.2 77.4 -51.9 145.2 10.9 17.3 17.0 59 59 A G E S-B 6 0A 29 -53,-2.2 -53,-2.8 -3,-0.1 2,-0.4 -0.920 80.5 -45.2 144.0-176.4 8.8 19.7 15.0 60 60 A L E +B 5 0A 79 -2,-0.3 26,-2.3 -55,-0.2 2,-0.3 -0.770 51.9 167.5 -97.9 134.4 6.3 20.1 12.1 61 61 A Y E -BE 4 85A 29 -57,-2.9 -57,-2.5 -2,-0.4 2,-0.3 -0.924 21.5-148.5-138.6 161.0 6.8 18.5 8.8 62 62 A T E - E 0 84A 42 22,-2.7 22,-2.4 -2,-0.3 2,-0.4 -0.842 37.6 -85.6-126.3 173.8 4.9 17.9 5.7 63 63 A V E - E 0 83A 22 -61,-0.5 2,-0.3 -2,-0.3 20,-0.2 -0.612 34.9-138.0 -85.2 124.3 5.2 14.9 3.1 64 64 A H > - 0 0 83 18,-3.2 3,-2.3 -2,-0.4 18,-0.4 -0.612 21.2-118.5 -78.6 139.5 7.8 15.1 0.4 65 65 A L G > S+ 0 0 141 -2,-0.3 3,-2.0 1,-0.3 -1,-0.1 0.794 106.8 72.3 -43.1 -40.6 6.7 13.9 -3.2 66 66 A S G 3 S+ 0 0 58 1,-0.3 -1,-0.3 12,-0.0 14,-0.2 0.494 78.3 80.0 -58.2 -3.9 9.3 11.1 -3.3 67 67 A S G < S+ 0 0 0 -3,-2.3 12,-4.1 15,-0.2 13,-0.5 0.709 86.4 71.4 -71.4 -19.4 7.2 9.2 -0.7 68 68 A F E < +F 78 0B 66 -3,-2.0 2,-0.3 10,-0.3 10,-0.2 -0.660 54.3 167.1-104.0 150.1 4.9 8.1 -3.5 69 69 A K E -F 77 0B 80 8,-2.8 8,-3.2 -2,-0.3 2,-0.6 -0.975 42.6 -99.9-147.0 161.8 5.3 5.6 -6.3 70 70 A V E -F 76 0B 100 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.793 46.3-136.7 -84.0 125.4 3.0 3.8 -8.8 71 71 A G > - 0 0 12 4,-3.5 3,-2.0 -2,-0.6 -1,-0.0 -0.202 27.4 -91.1 -73.4 176.4 2.3 0.3 -7.5 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.632 125.3 53.8 -65.0 -14.5 2.3 -3.0 -9.4 73 73 A F T 3 S- 0 0 169 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.155 120.8-104.2-104.2 19.0 -1.5 -2.6 -10.1 74 74 A G S < S+ 0 0 62 -3,-2.0 2,-0.2 1,-0.3 -2,-0.1 0.440 84.9 115.5 76.2 -0.3 -1.1 0.9 -11.7 75 75 A S S S- 0 0 72 1,-0.1 -4,-3.5 -5,-0.0 2,-0.3 -0.621 74.3 -92.1 -96.4 158.9 -2.5 2.9 -8.6 76 76 A L E -F 70 0B 122 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.534 46.9-179.1 -71.6 133.6 -0.6 5.3 -6.5 77 77 A M E -F 69 0B 79 -8,-3.2 -8,-2.8 -2,-0.3 2,-0.4 -0.924 31.5-114.1-121.6 155.4 1.1 3.9 -3.4 78 78 A I E -F 68 0B 93 -2,-0.3 -10,-0.3 -10,-0.2 3,-0.1 -0.745 26.0-175.1 -82.7 128.7 3.2 5.3 -0.5 79 79 A D S S- 0 0 66 -12,-4.1 2,-0.3 -2,-0.4 -1,-0.2 0.862 70.6 -23.5 -79.3 -67.3 6.7 3.8 -0.7 80 80 A R S S- 0 0 78 -13,-0.5 2,-0.7 -14,-0.2 -1,-0.3 -0.973 72.0-108.5-145.1 133.7 8.2 5.3 2.5 81 81 A L - 0 0 32 -2,-0.3 2,-0.5 -3,-0.1 -33,-0.1 -0.576 41.3-171.9 -69.1 105.8 6.9 8.5 4.3 82 82 A R - 0 0 43 -2,-0.7 -18,-3.2 -18,-0.4 2,-0.2 -0.916 8.5-152.6-104.1 123.3 9.7 11.0 3.5 83 83 A L E -E 63 0A 14 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.654 17.1-171.6-107.8 152.8 9.4 14.3 5.4 84 84 A V E -E 62 0A 49 -22,-2.4 -22,-2.7 -2,-0.2 -2,-0.0 -0.976 41.9 -87.5-130.6 149.0 10.5 17.9 4.8 85 85 A P E -E 61 0A 94 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.284 40.8-113.9 -59.0 141.0 10.2 20.8 7.4 86 86 A A 0 0 50 -26,-2.3 -25,-0.1 1,-0.2 -27,-0.0 0.518 360.0 360.0 -54.3 -18.3 7.0 22.8 7.4 87 87 A K 0 0 251 -27,-0.2 -1,-0.2 0, 0.0 -26,-0.1 0.343 360.0 360.0-147.5 360.0 7.9 26.4 6.2