==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/RNA 08-MAY-06 2GXB . COMPND 2 MOLECULE: 5'-R(P*(DU)P*CP*GP*CP*GP*CP*G)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.ATHANASIADIS,D.PLACIDO,A.RICH . 125 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8635.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 86 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 10.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 42.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 137 A S > 0 0 81 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 142.0 69.3 -8.4 42.1 2 138 A H H > + 0 0 149 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.924 360.0 43.1 -53.8 -49.2 67.7 -11.4 43.9 3 139 A M H > S+ 0 0 15 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.881 109.5 56.6 -68.3 -42.2 64.2 -10.4 42.8 4 140 A E H > S+ 0 0 24 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.915 108.5 48.7 -53.3 -47.1 65.2 -9.6 39.2 5 141 A Q H X S+ 0 0 102 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.882 109.6 51.1 -62.5 -42.2 66.6 -13.2 38.9 6 142 A R H X S+ 0 0 87 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.930 114.0 44.2 -59.9 -45.2 63.4 -14.7 40.3 7 143 A I H X S+ 0 0 0 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.943 114.7 47.5 -67.4 -48.6 61.2 -12.8 37.9 8 144 A L H X S+ 0 0 20 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.901 113.1 49.8 -60.6 -41.9 63.5 -13.5 34.9 9 145 A K H X S+ 0 0 131 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.907 107.4 53.7 -63.1 -44.1 63.7 -17.2 35.8 10 146 A F H X S+ 0 0 43 -4,-2.3 4,-0.7 1,-0.2 -2,-0.2 0.935 112.4 44.9 -54.1 -49.7 59.9 -17.5 36.1 11 147 A L H >X S+ 0 0 2 -4,-2.2 3,-0.9 1,-0.2 4,-0.7 0.882 110.7 52.6 -61.6 -43.0 59.5 -16.0 32.6 12 148 A E H >< S+ 0 0 132 -4,-2.3 3,-0.8 1,-0.3 -1,-0.2 0.861 102.1 61.3 -64.1 -35.0 62.2 -18.2 31.1 13 149 A E H 3< S+ 0 0 141 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.761 97.9 59.2 -59.2 -29.1 60.5 -21.3 32.6 14 150 A L H << S- 0 0 70 -3,-0.9 -1,-0.2 -4,-0.7 -2,-0.2 0.769 114.3-109.2 -75.3 -27.9 57.4 -20.5 30.4 15 151 A G X< - 0 0 33 -3,-0.8 3,-1.5 -4,-0.7 -1,-0.2 -0.316 50.2 -38.6 113.4 162.2 59.2 -20.7 27.1 16 152 A E T 3 S+ 0 0 199 1,-0.2 3,-0.1 -2,-0.1 -4,-0.0 -0.202 123.5 9.6 -58.0 140.1 60.3 -18.2 24.5 17 153 A G T 3 S+ 0 0 58 1,-0.2 -1,-0.2 44,-0.1 2,-0.1 0.384 91.2 139.2 75.2 -2.4 58.0 -15.3 23.7 18 154 A K < - 0 0 122 -3,-1.5 43,-0.5 -7,-0.2 2,-0.3 -0.443 35.7-155.7 -78.2 149.0 55.6 -16.1 26.6 19 155 A A - 0 0 43 41,-0.1 2,-0.3 -2,-0.1 41,-0.2 -0.857 12.0-178.2-124.6 156.9 54.2 -13.2 28.7 20 156 A T B -A 59 0A 9 39,-1.8 39,-2.7 -2,-0.3 2,-0.2 -0.926 22.0-116.7-144.5 168.2 52.8 -12.8 32.2 21 157 A T > - 0 0 26 -2,-0.3 4,-2.6 37,-0.2 5,-0.2 -0.712 23.9-119.0-106.1 159.3 51.3 -10.1 34.4 22 158 A A H > S+ 0 0 8 35,-0.4 4,-2.9 -2,-0.2 5,-0.2 0.853 116.5 60.2 -60.0 -38.1 52.5 -8.5 37.7 23 159 A H H > S+ 0 0 142 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.941 109.2 41.7 -51.8 -52.9 49.3 -9.9 39.3 24 160 A D H > S+ 0 0 59 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.921 113.8 50.8 -65.0 -47.7 50.4 -13.4 38.4 25 161 A L H X S+ 0 0 0 -4,-2.6 4,-2.7 1,-0.2 5,-0.2 0.908 107.4 55.3 -58.8 -42.9 54.0 -12.9 39.3 26 162 A S H X>S+ 0 0 27 -4,-2.9 5,-2.0 1,-0.2 4,-0.6 0.910 112.7 41.7 -56.5 -46.1 53.0 -11.5 42.7 27 163 A G H <5S+ 0 0 61 -4,-1.7 3,-0.3 3,-0.2 -2,-0.2 0.941 118.6 42.6 -67.1 -50.3 50.9 -14.7 43.5 28 164 A K H <5S+ 0 0 151 -4,-2.6 -2,-0.2 1,-0.2 -3,-0.2 0.845 121.2 39.7 -68.8 -37.9 53.4 -17.3 42.2 29 165 A L H <5S- 0 0 20 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.453 105.6-125.2 -92.7 -4.1 56.5 -15.7 43.7 30 166 A G T <5 + 0 0 67 -4,-0.6 -3,-0.2 -3,-0.3 -4,-0.1 0.929 66.0 130.2 62.8 50.0 54.8 -14.7 46.9 31 167 A T < - 0 0 11 -5,-2.0 -1,-0.2 -6,-0.2 -2,-0.2 -0.998 66.6 -98.1-139.6 133.7 55.8 -11.1 46.6 32 168 A P >> - 0 0 86 0, 0.0 4,-2.1 0, 0.0 3,-0.7 -0.233 31.7-125.7 -56.7 141.7 53.6 -7.9 46.9 33 169 A K H 3> S+ 0 0 100 1,-0.3 4,-3.2 2,-0.2 5,-0.2 0.813 108.5 62.5 -60.3 -32.8 52.6 -6.6 43.4 34 170 A K H 3> S+ 0 0 188 2,-0.2 4,-2.1 1,-0.2 -1,-0.3 0.900 108.4 42.2 -57.2 -43.3 54.0 -3.2 44.2 35 171 A E H <> S+ 0 0 65 -3,-0.7 4,-2.0 2,-0.2 -2,-0.2 0.920 112.3 53.4 -69.7 -47.2 57.5 -4.7 44.5 36 172 A I H X S+ 0 0 0 -4,-2.1 4,-2.5 1,-0.2 3,-0.2 0.948 112.1 46.4 -49.5 -50.8 56.9 -6.9 41.5 37 173 A N H X S+ 0 0 41 -4,-3.2 4,-2.7 1,-0.2 5,-0.3 0.895 106.2 57.1 -66.5 -41.0 56.0 -3.8 39.5 38 174 A R H X S+ 0 0 162 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.903 114.5 40.1 -51.2 -43.9 59.0 -1.7 40.8 39 175 A V H X S+ 0 0 9 -4,-2.0 4,-2.7 -3,-0.2 -2,-0.2 0.845 112.9 54.5 -78.2 -36.6 61.3 -4.5 39.4 40 176 A L H X S+ 0 0 0 -4,-2.5 4,-1.9 -5,-0.2 -2,-0.2 0.931 111.4 44.0 -61.8 -48.2 59.4 -5.1 36.2 41 177 A Y H X S+ 0 0 106 -4,-2.7 4,-1.6 2,-0.2 -1,-0.2 0.856 114.9 50.4 -66.6 -34.5 59.5 -1.4 35.2 42 178 A S H X S+ 0 0 40 -4,-1.3 4,-1.9 -5,-0.3 5,-0.2 0.954 109.3 49.3 -65.9 -51.8 63.2 -1.1 36.1 43 179 A L H <>S+ 0 0 0 -4,-2.7 5,-2.6 1,-0.2 6,-0.8 0.862 109.4 53.5 -54.1 -40.9 64.1 -4.2 34.1 44 180 A A H ><5S+ 0 0 31 -4,-1.9 3,-0.8 4,-0.2 -1,-0.2 0.888 106.9 51.0 -60.9 -42.3 62.3 -2.8 31.1 45 181 A K H 3<5S+ 0 0 182 -4,-1.6 -2,-0.2 1,-0.3 -1,-0.2 0.834 109.4 50.8 -63.5 -35.0 64.3 0.4 31.5 46 182 A K T 3<5S- 0 0 120 -4,-1.9 -1,-0.3 -5,-0.1 -2,-0.2 0.547 117.9-118.0 -78.6 -9.4 67.4 -1.7 31.5 47 183 A G T < 5S+ 0 0 49 -3,-0.8 -3,-0.2 -4,-0.5 -2,-0.1 0.612 85.9 114.0 82.5 14.9 66.2 -3.5 28.3 48 184 A K S 0 0 129 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 130.1 36.8 13.5 57.2 65 140 B E H > + 0 0 36 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.897 360.0 52.1 -62.9 -43.9 34.8 15.3 54.5 66 141 B Q H > S+ 0 0 115 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.815 106.3 54.8 -69.0 -30.8 33.5 18.0 56.8 67 142 B R H > S+ 0 0 128 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.895 111.6 43.4 -67.7 -43.5 37.0 18.9 58.0 68 143 B I H X S+ 0 0 3 -4,-1.5 4,-2.7 2,-0.2 5,-0.3 0.926 112.4 53.0 -68.1 -44.9 38.3 19.4 54.5 69 144 B L H X S+ 0 0 27 -4,-2.6 4,-1.6 1,-0.2 -2,-0.2 0.905 110.7 47.4 -58.6 -43.3 35.1 21.4 53.5 70 145 B K H X S+ 0 0 35 -4,-2.1 4,-2.8 2,-0.2 -1,-0.2 0.917 113.2 47.8 -62.6 -45.2 35.6 23.8 56.5 71 146 B F H X S+ 0 0 41 -4,-1.8 4,-1.1 1,-0.2 -2,-0.2 0.914 113.8 45.6 -64.6 -45.0 39.3 24.3 55.8 72 147 B L H < S+ 0 0 2 -4,-2.7 4,-0.3 2,-0.2 50,-0.3 0.765 112.7 53.5 -70.1 -27.0 38.8 25.0 52.0 73 148 B E H >< S+ 0 0 113 -4,-1.6 3,-1.7 -5,-0.3 -2,-0.2 0.952 108.8 47.3 -65.1 -53.2 35.9 27.3 53.0 74 149 B E H 3< S+ 0 0 163 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.681 94.0 78.7 -65.2 -18.4 38.1 29.3 55.4 75 150 B L T 3< S- 0 0 54 -4,-1.1 -1,-0.3 1,-0.2 -2,-0.2 0.778 108.6-108.6 -60.4 -27.7 40.7 29.5 52.7 76 151 B G X - 0 0 28 -3,-1.7 3,-1.7 -4,-0.3 -1,-0.2 -0.328 45.5 -39.1 117.0 165.6 38.6 32.3 51.1 77 152 B E T 3 S- 0 0 197 1,-0.3 3,-0.1 -2,-0.1 -4,-0.0 -0.352 124.5 -2.6 -65.6 127.5 36.3 32.9 48.2 78 153 B G T 3 S+ 0 0 68 1,-0.2 -1,-0.3 -2,-0.1 2,-0.3 0.570 99.5 138.8 68.5 11.0 37.6 31.3 44.9 79 154 B K < - 0 0 120 -3,-1.7 43,-0.4 -7,-0.2 2,-0.3 -0.635 28.4-177.2 -91.7 146.8 40.7 30.0 46.6 80 155 B A + 0 0 28 -2,-0.3 2,-0.3 41,-0.1 41,-0.2 -0.941 5.2 179.8-137.8 155.0 42.2 26.6 46.0 81 156 B T B -C 120 0B 19 39,-1.5 39,-2.1 -2,-0.3 2,-0.1 -0.907 27.5 -92.0-147.6-178.0 45.0 24.4 47.2 82 157 B T > - 0 0 25 -2,-0.3 4,-2.2 37,-0.2 5,-0.1 -0.436 26.6-119.1 -97.1 163.7 46.7 21.0 46.8 83 158 B A H > S+ 0 0 9 35,-0.4 4,-2.9 2,-0.2 5,-0.2 0.899 117.6 57.5 -64.2 -41.7 46.3 17.7 48.6 84 159 B H H > S+ 0 0 139 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.874 108.3 46.1 -52.8 -43.5 49.9 18.0 49.6 85 160 B D H > S+ 0 0 55 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.925 113.0 47.7 -69.1 -45.6 49.1 21.3 51.3 86 161 B L H X S+ 0 0 0 -4,-2.2 4,-2.5 2,-0.2 6,-0.2 0.877 107.7 58.7 -59.4 -40.7 45.9 20.0 53.0 87 162 B S H X>S+ 0 0 23 -4,-2.9 5,-2.0 1,-0.2 4,-0.6 0.939 111.6 39.6 -54.4 -52.1 48.0 17.0 54.2 88 163 B G H ><5S+ 0 0 63 -4,-1.8 3,-0.7 3,-0.2 -2,-0.2 0.929 117.1 48.8 -61.2 -47.6 50.4 19.3 56.0 89 164 B K H 3<5S+ 0 0 140 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.765 120.3 35.3 -73.3 -27.9 47.8 21.7 57.4 90 165 B L H 3<5S- 0 0 20 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.2 0.328 104.0-123.4-105.0 4.3 45.5 18.9 58.7 91 166 B G T <<5 + 0 0 71 -3,-0.7 -3,-0.2 -4,-0.6 -4,-0.1 0.922 67.3 132.3 53.0 49.1 48.2 16.5 59.8 92 167 B T < - 0 0 20 -5,-2.0 -1,-0.2 -6,-0.2 -2,-0.2 -0.994 66.0 -98.9-133.1 135.9 46.8 13.7 57.6 93 168 B P >> - 0 0 83 0, 0.0 4,-2.2 0, 0.0 3,-0.7 -0.251 30.3-127.3 -50.5 135.8 48.5 11.4 55.2 94 169 B K H 3> S+ 0 0 97 1,-0.2 4,-3.4 2,-0.2 5,-0.2 0.835 108.7 64.4 -55.4 -39.4 48.1 12.6 51.6 95 170 B K H 3> S+ 0 0 185 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.902 108.5 39.2 -43.8 -51.9 46.7 9.1 50.7 96 171 B E H <> S+ 0 0 82 -3,-0.7 4,-2.0 2,-0.2 -2,-0.2 0.893 113.9 54.3 -72.4 -44.1 43.7 9.8 53.0 97 172 B I H X S+ 0 0 4 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.946 110.6 46.9 -51.2 -52.1 43.4 13.4 52.0 98 173 B N H X S+ 0 0 39 -4,-3.4 4,-2.5 1,-0.2 5,-0.3 0.875 107.1 55.3 -64.5 -40.9 43.2 12.4 48.3 99 174 B R H X S+ 0 0 160 -4,-1.8 4,-1.4 -5,-0.2 -1,-0.2 0.914 112.8 44.0 -56.1 -43.4 40.6 9.6 48.9 100 175 B V H X S+ 0 0 6 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.893 111.9 52.2 -70.6 -42.0 38.3 12.2 50.6 101 176 B L H X S+ 0 0 0 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.939 109.9 47.7 -59.9 -48.8 38.9 14.9 47.9 102 177 B Y H X S+ 0 0 110 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.853 113.1 49.1 -64.4 -34.3 38.0 12.7 45.0 103 178 B S H X S+ 0 0 33 -4,-1.4 4,-2.0 -5,-0.3 -1,-0.2 0.909 108.4 52.6 -71.1 -43.2 34.9 11.4 46.7 104 179 B L H <>S+ 0 0 0 -4,-2.5 5,-2.3 2,-0.2 6,-0.7 0.878 108.1 52.4 -56.7 -40.4 33.7 14.9 47.6 105 180 B A H ><5S+ 0 0 32 -4,-2.1 3,-1.5 1,-0.2 -2,-0.2 0.921 106.4 52.1 -62.6 -48.2 34.1 15.9 43.9 106 181 B K H 3<5S+ 0 0 198 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.896 108.3 53.1 -48.4 -43.2 32.0 12.9 42.9 107 182 B K T 3<5S- 0 0 121 -4,-2.0 -1,-0.3 -5,-0.1 -2,-0.2 0.547 116.2-118.3 -74.4 -7.0 29.4 14.3 45.4 108 183 B G T < 5S+ 0 0 50 -3,-1.5 -3,-0.2 -4,-0.3 -2,-0.1 0.582 86.2 111.9 81.4 12.0 29.5 17.7 43.7 109 184 B K S