==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 30-APR-99 1GYF . COMPND 2 MOLECULE: PROTEIN (CYTOPLASMIC DOMAIN BINDING PROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.FREUND,V.DOETSCH,K.NISHIZAWA,E.L.REINHERZ,G.WAGNER . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4544.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 21.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A D 0 0 189 0, 0.0 2,-0.7 0, 0.0 61,-0.1 0.000 360.0 360.0 360.0 56.2 -2.4 3.4 -14.3 2 26 A V - 0 0 43 59,-0.1 20,-2.0 41,-0.1 2,-0.3 -0.536 360.0-156.8 -69.5 110.5 -1.9 4.5 -10.7 3 27 A M B -A 21 0A 69 -2,-0.7 40,-1.1 41,-0.3 41,-0.3 -0.635 14.1-179.3 -90.5 147.0 0.8 2.2 -9.3 4 28 A W E -B 42 0B 10 16,-1.8 16,-0.4 14,-0.5 2,-0.3 -0.689 13.1-151.1-132.5-174.4 1.2 1.6 -5.5 5 29 A E E -B 41 0B 39 36,-2.1 36,-2.3 -2,-0.2 13,-0.4 -0.973 4.5-149.9-156.9 160.7 3.3 -0.2 -3.0 6 30 A Y E -BC 40 17B 21 11,-3.3 11,-1.9 -2,-0.3 2,-0.5 -0.987 0.2-160.0-144.9 133.4 3.0 -1.7 0.5 7 31 A K E -BC 39 16B 13 32,-1.1 32,-3.0 -2,-0.4 9,-0.2 -0.948 12.1-151.2-114.6 123.5 5.4 -2.3 3.4 8 32 A W S S+ 0 0 126 7,-0.6 -1,-0.2 -2,-0.5 2,-0.1 0.926 85.4 34.9 -55.2 -48.1 4.6 -4.8 6.1 9 33 A E S S- 0 0 114 6,-0.3 30,-0.3 -3,-0.1 -2,-0.1 -0.335 78.9-127.1 -98.5-177.4 6.5 -2.9 8.7 10 34 A N + 0 0 106 -2,-0.1 2,-0.2 28,-0.1 -2,-0.0 -0.177 66.7 115.9-124.7 38.6 7.0 0.9 9.2 11 35 A T S S- 0 0 47 4,-0.1 -2,-0.1 1,-0.1 0, 0.0 -0.634 74.6-118.1-105.1 165.2 10.8 1.0 9.3 12 36 A G S S+ 0 0 84 -2,-0.2 -1,-0.1 1,-0.2 0, 0.0 0.515 117.7 39.9 -78.6 -4.0 13.3 2.6 7.0 13 37 A D S S+ 0 0 153 2,-0.1 -1,-0.2 0, 0.0 3,-0.1 0.605 83.8 121.9-114.3 -23.7 14.8 -0.8 6.2 14 38 A A S S- 0 0 23 1,-0.1 2,-0.1 -7,-0.1 -7,-0.0 -0.072 74.7-100.2 -43.5 137.2 11.6 -2.8 6.0 15 39 A E - 0 0 138 1,-0.1 -7,-0.6 -8,-0.0 2,-0.4 -0.379 38.8-147.7 -64.4 137.1 11.2 -4.5 2.6 16 40 A L E +C 7 0B 59 -9,-0.2 -9,-0.2 -3,-0.1 2,-0.2 -0.917 29.8 144.0-114.3 136.1 8.8 -2.7 0.3 17 41 A Y E +C 6 0B 90 -11,-1.9 -11,-3.3 -2,-0.4 3,-0.1 -0.580 24.9 106.4-141.8-156.5 6.6 -4.3 -2.3 18 42 A G + 0 0 0 -13,-0.4 2,-3.4 -2,-0.2 -14,-0.5 0.647 32.9 158.2 85.6 16.3 3.2 -3.8 -3.9 19 43 A P + 0 0 72 0, 0.0 2,-0.3 0, 0.0 -14,-0.2 -0.195 41.8 112.3 -70.4 54.6 4.4 -2.4 -7.3 20 44 A F S S- 0 0 68 -2,-3.4 -16,-1.8 -16,-0.4 5,-0.1 -0.788 79.3 -70.2-123.3 166.2 1.1 -3.4 -8.8 21 45 A T B >> -A 3 0A 65 -2,-0.3 4,-1.5 -18,-0.2 3,-1.2 -0.207 47.3-111.7 -55.4 144.2 -1.9 -1.6 -10.2 22 46 A S H 3> S+ 0 0 10 -20,-2.0 4,-1.6 1,-0.3 -1,-0.1 0.807 122.2 58.9 -46.7 -30.3 -4.1 0.2 -7.6 23 47 A A H 3> S+ 0 0 44 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.915 100.3 52.4 -66.2 -44.7 -6.6 -2.4 -8.5 24 48 A Q H <> S+ 0 0 85 -3,-1.2 4,-1.8 1,-0.2 -1,-0.2 0.784 107.0 55.9 -62.7 -26.2 -4.3 -5.3 -7.5 25 49 A M H X S+ 0 0 0 -4,-1.5 4,-2.8 2,-0.2 5,-0.3 0.910 103.2 52.1 -72.3 -43.2 -3.9 -3.5 -4.2 26 50 A Q H X S+ 0 0 77 -4,-1.6 4,-3.2 2,-0.2 5,-0.3 0.847 107.7 55.5 -61.3 -33.9 -7.6 -3.4 -3.5 27 51 A T H X S+ 0 0 76 -4,-1.6 4,-4.1 2,-0.2 5,-0.2 0.980 111.9 39.2 -62.9 -58.7 -7.6 -7.2 -4.1 28 52 A W H X>S+ 0 0 52 -4,-1.8 4,-2.0 2,-0.2 5,-1.9 0.922 121.7 45.1 -57.7 -46.3 -5.0 -8.0 -1.5 29 53 A V H <5S+ 0 0 21 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.915 121.1 38.6 -64.2 -44.6 -6.4 -5.5 0.9 30 54 A S H <5S+ 0 0 76 -4,-3.2 -2,-0.2 -5,-0.3 -1,-0.2 0.819 112.4 58.5 -75.3 -32.4 -10.0 -6.6 0.3 31 55 A E H <5S- 0 0 126 -4,-4.1 -2,-0.2 -5,-0.3 -3,-0.2 0.886 117.6-109.3 -64.8 -39.6 -8.9 -10.2 0.1 32 56 A G T <5S+ 0 0 38 -4,-2.0 -3,-0.2 -5,-0.2 -4,-0.1 0.398 78.8 130.5 123.1 2.1 -7.5 -10.1 3.6 33 57 A Y S + 0 0 2 -6,-0.7 3,-0.6 -5,-0.2 -1,-0.3 -0.701 63.3 161.0-121.9 78.7 -3.4 -7.4 5.2 35 59 A P T 3 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.811 87.5 34.4 -66.1 -30.8 -5.5 -8.0 8.3 36 60 A D T 3 S- 0 0 141 1,-0.2 18,-0.1 -3,-0.1 -2,-0.1 0.318 120.4-112.0-105.2 4.9 -3.6 -5.4 10.3 37 61 A G < - 0 0 8 -3,-0.6 2,-0.3 16,-0.1 -1,-0.2 0.055 28.0-118.8 83.6 162.3 -3.0 -3.1 7.3 38 62 A V - 0 0 3 -4,-0.1 15,-2.1 13,-0.1 2,-1.8 -0.908 29.7 -91.0-137.5 164.8 0.2 -2.2 5.4 39 63 A Y E -BD 7 52B 80 -32,-3.0 -32,-1.1 -2,-0.3 13,-0.2 -0.561 52.6-167.6 -78.0 83.5 2.3 0.8 4.6 40 64 A C E +BD 6 51B 1 -2,-1.8 11,-1.9 11,-1.6 2,-0.3 -0.470 14.4 160.6 -76.0 144.9 0.7 1.7 1.3 41 65 A R E -B 5 0B 53 -36,-2.3 -36,-2.1 9,-0.2 2,-0.4 -0.984 38.6-106.1-158.8 159.3 2.3 4.3 -1.0 42 66 A K E -B 4 0B 59 -2,-0.3 5,-0.4 -38,-0.3 -38,-0.3 -0.782 17.4-153.0 -95.7 133.3 2.4 5.4 -4.6 43 67 A L S S+ 0 0 43 -40,-1.1 -1,-0.2 -2,-0.4 -39,-0.1 0.996 73.4 59.6 -64.9 -66.3 5.3 4.5 -6.8 44 68 A D S S+ 0 0 130 1,-0.3 -41,-0.3 -41,-0.3 -1,-0.3 -0.965 107.4 28.5-119.6 126.4 5.2 7.4 -9.3 45 69 A P S S- 0 0 97 0, 0.0 -1,-0.3 0, 0.0 2,-0.2 0.422 96.7-150.2 -79.4 139.1 5.4 10.1 -8.4 46 70 A P + 0 0 98 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.537 38.7 129.3 -76.3 135.6 7.6 8.9 -5.4 47 71 A G - 0 0 69 -5,-0.4 2,-0.3 -2,-0.2 3,-0.1 0.071 45.2-113.2-144.0-101.8 7.4 11.0 -2.2 48 72 A G + 0 0 28 1,-0.2 -6,-0.2 -2,-0.0 -1,-0.1 -0.882 62.2 109.3-178.4-149.5 6.8 9.9 1.4 49 73 A Q - 0 0 173 -2,-0.3 -1,-0.2 -8,-0.1 -2,-0.0 0.969 62.8-141.9 48.9 69.2 4.4 10.1 4.3 50 74 A F - 0 0 58 -3,-0.1 2,-0.3 -9,-0.1 -9,-0.2 -0.015 13.0-150.8 -54.6 163.5 3.2 6.5 4.1 51 75 A Y E -D 40 0B 136 -11,-1.9 -11,-1.6 -13,-0.1 -13,-0.1 -0.980 19.3-110.3-146.1 129.8 -0.4 5.7 4.8 52 76 A N E > -D 39 0B 51 -2,-0.3 3,-3.4 -13,-0.2 4,-0.5 -0.303 26.3-126.1 -58.3 135.1 -2.0 2.5 6.2 53 77 A S G > S+ 0 0 3 -15,-2.1 3,-0.7 1,-0.3 -1,-0.2 0.789 113.9 58.7 -52.8 -28.3 -4.0 0.6 3.6 54 78 A K G 3 S+ 0 0 115 1,-0.2 -1,-0.3 -16,-0.2 -2,-0.1 0.464 107.8 46.3 -81.0 -1.4 -6.9 0.8 6.1 55 79 A R G < S+ 0 0 195 -3,-3.4 2,-0.3 2,-0.0 -1,-0.2 0.301 95.8 91.7-120.5 5.0 -6.7 4.6 5.9 56 80 A I S < S- 0 0 27 -3,-0.7 2,-0.7 -4,-0.5 -5,-0.0 -0.738 73.4-124.1-103.3 151.8 -6.4 5.0 2.1 57 81 A D - 0 0 78 -2,-0.3 3,-0.5 1,-0.1 -3,-0.1 -0.845 20.7-177.2 -98.6 115.5 -9.2 5.6 -0.3 58 82 A F S S+ 0 0 29 -2,-0.7 4,-0.1 1,-0.2 -1,-0.1 -0.041 75.3 70.2 -98.6 30.4 -9.4 3.0 -3.1 59 83 A D S S+ 0 0 135 2,-0.1 -1,-0.2 1,-0.1 -2,-0.0 -0.023 88.0 59.1-134.3 29.1 -12.3 4.8 -4.8 60 84 A L S S+ 0 0 120 -3,-0.5 -2,-0.1 0, 0.0 -1,-0.1 -0.006 103.1 44.9-147.0 30.6 -10.7 7.9 -6.1 61 85 A Y 0 0 94 1,-0.4 -59,-0.1 -3,-0.1 -3,-0.1 0.497 360.0 360.0-138.5 -52.0 -8.0 6.6 -8.4 62 86 A T 0 0 144 -4,-0.1 -1,-0.4 -61,-0.1 0, 0.0 -0.937 360.0 360.0-111.4 360.0 -9.3 3.8 -10.7