==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATOR 09-MAY-06 2GYP . COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.NARAYANA,N.B.PHILLIPS,Q.X.HUA,W.JIA,M.A.WEISS . 66 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6410.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 71.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 59.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 214 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -78.1 19.2 -7.3 -7.6 2 2 A V - 0 0 73 1,-0.1 5,-0.1 2,-0.1 0, 0.0 -0.182 360.0 -90.3 -54.2 141.6 16.0 -7.1 -5.7 3 3 A S > - 0 0 70 1,-0.1 4,-2.3 4,-0.1 5,-0.2 -0.168 29.1-119.1 -55.2 154.1 13.2 -9.3 -7.1 4 4 A K H > S+ 0 0 161 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.942 117.4 48.9 -54.8 -50.9 10.9 -7.7 -9.7 5 5 A L H > S+ 0 0 98 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.920 111.3 48.6 -56.9 -47.6 8.0 -8.3 -7.4 6 6 A S H > S+ 0 0 40 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.869 112.6 47.7 -61.3 -39.3 9.8 -6.8 -4.4 7 7 A Q H X S+ 0 0 74 -4,-2.3 4,-2.3 2,-0.2 5,-0.3 0.928 111.8 50.0 -66.3 -49.3 10.8 -3.8 -6.4 8 8 A L H X S+ 0 0 90 -4,-3.1 4,-2.4 1,-0.2 5,-0.2 0.898 109.8 52.7 -56.6 -43.8 7.2 -3.3 -7.8 9 9 A Q H X S+ 0 0 110 -4,-2.4 4,-1.9 -5,-0.2 -1,-0.2 0.920 111.5 43.3 -59.0 -50.1 5.8 -3.6 -4.3 10 10 A T H X S+ 0 0 93 -4,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.917 115.7 47.3 -64.5 -46.8 8.1 -0.9 -2.8 11 11 A E H X S+ 0 0 131 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.888 113.2 50.3 -60.8 -45.3 7.7 1.6 -5.7 12 12 A L H X S+ 0 0 103 -4,-2.4 4,-1.9 -5,-0.3 -2,-0.2 0.863 109.9 49.3 -64.4 -40.1 3.9 1.0 -5.7 13 13 A L H X S+ 0 0 86 -4,-1.9 4,-2.2 -5,-0.2 -1,-0.2 0.918 111.7 47.3 -69.1 -40.4 3.6 1.6 -2.0 14 14 A A H X S+ 0 0 59 -4,-2.1 4,-2.6 1,-0.2 5,-0.2 0.951 110.4 54.3 -65.3 -44.5 5.6 4.9 -2.1 15 15 A A H X S+ 0 0 61 -4,-2.5 4,-1.6 1,-0.2 -2,-0.2 0.865 108.9 49.1 -54.1 -40.0 3.5 6.0 -5.1 16 16 A L H X>S+ 0 0 84 -4,-1.9 5,-2.5 2,-0.2 4,-0.7 0.927 110.8 47.8 -67.5 -46.5 0.3 5.4 -3.1 17 17 A L H ><5S+ 0 0 90 -4,-2.2 3,-1.0 1,-0.2 -2,-0.2 0.925 111.7 50.9 -62.0 -39.8 1.5 7.3 -0.1 18 18 A E H 3<5S+ 0 0 160 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.841 106.7 56.5 -63.3 -34.8 2.7 10.2 -2.4 19 19 A S H 3<5S- 0 0 90 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.601 131.4 -88.4 -75.2 -14.7 -0.8 10.2 -4.0 20 20 A X T <<5 - 0 0 81 -3,-1.0 -3,-0.2 -4,-0.7 -2,-0.1 0.513 55.3-178.8 122.1 -0.2 -2.5 10.7 -0.6 21 21 A L < - 0 0 56 -5,-2.5 -1,-0.2 -6,-0.1 2,-0.0 -0.076 28.9-121.6 -39.2 124.7 -3.1 7.3 0.8 22 22 A S > - 0 0 53 1,-0.1 4,-1.4 4,-0.0 5,-0.1 -0.235 4.4-129.0 -72.3 154.2 -5.0 7.6 4.1 23 23 A K H > S+ 0 0 84 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.850 109.6 62.2 -72.0 -30.7 -3.9 6.3 7.4 24 24 A E H > S+ 0 0 85 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.931 102.6 50.2 -57.3 -45.0 -7.2 4.7 7.9 25 25 A A H > S+ 0 0 42 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.901 111.4 47.8 -61.0 -43.8 -6.5 2.5 4.8 26 26 A L H X S+ 0 0 68 -4,-1.4 4,-2.4 1,-0.2 -1,-0.2 0.874 110.4 51.8 -68.5 -35.4 -3.1 1.4 6.0 27 27 A I H X S+ 0 0 69 -4,-2.5 4,-1.6 2,-0.2 -1,-0.2 0.880 108.9 51.7 -67.4 -35.4 -4.5 0.6 9.4 28 28 A Q H < S+ 0 0 158 -4,-2.1 4,-0.4 -5,-0.2 -2,-0.2 0.923 111.2 46.7 -64.4 -45.2 -7.1 -1.5 7.6 29 29 A A H >< S+ 0 0 51 -4,-2.4 3,-0.9 1,-0.2 -2,-0.2 0.857 112.1 49.9 -64.3 -39.9 -4.3 -3.4 5.7 30 30 A L H >< S+ 0 0 92 -4,-2.4 3,-1.6 1,-0.2 -1,-0.2 0.859 96.8 71.8 -68.1 -34.4 -2.2 -3.9 8.8 31 31 A G T 3< S+ 0 0 54 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.723 75.8 79.3 -53.2 -25.8 -5.3 -5.3 10.6 32 32 A E T < 0 0 167 -3,-0.9 -1,-0.3 -4,-0.4 -2,-0.1 0.434 360.0 360.0 -65.2 2.7 -5.1 -8.5 8.5 33 33 A W < 0 0 239 -3,-1.6 -3,-0.0 0, 0.0 0, 0.0 -0.556 360.0 360.0-115.9 360.0 -2.4 -9.4 11.0 34 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 34 B X 0 0 229 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.5 -2.6 -20.7 29.7 36 35 B V - 0 0 84 2,-0.0 2,-0.0 1,-0.0 0, 0.0 -0.905 360.0-117.0-115.8 150.0 -0.7 -17.4 29.9 37 36 B S > - 0 0 64 -2,-0.4 4,-2.3 1,-0.1 5,-0.2 -0.244 30.2-111.8 -69.9 163.1 2.4 -16.3 31.7 38 37 B K H > S+ 0 0 196 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.910 117.4 50.0 -64.2 -40.9 2.3 -13.7 34.4 39 38 B L H > S+ 0 0 114 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.921 112.3 46.8 -64.4 -45.1 4.2 -11.3 32.2 40 39 B S H > S+ 0 0 47 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.890 110.4 50.8 -67.5 -37.9 2.0 -11.8 29.3 41 40 B Q H X S+ 0 0 84 -4,-2.3 4,-2.7 2,-0.2 5,-0.2 0.912 110.8 51.2 -65.8 -41.9 -1.2 -11.4 31.2 42 41 B L H X S+ 0 0 97 -4,-2.1 4,-1.9 -5,-0.2 -2,-0.2 0.897 110.7 47.2 -63.5 -40.1 0.0 -8.2 32.7 43 42 B Q H X S+ 0 0 107 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.909 113.9 48.5 -66.3 -40.7 1.0 -6.8 29.3 44 43 B T H X S+ 0 0 78 -4,-2.2 4,-2.2 -5,-0.2 -2,-0.2 0.908 112.1 47.3 -64.7 -45.0 -2.4 -7.8 27.9 45 44 B E H X S+ 0 0 111 -4,-2.7 4,-2.2 2,-0.2 -1,-0.2 0.826 113.3 51.1 -63.1 -38.7 -4.4 -6.3 30.9 46 45 B L H X S+ 0 0 94 -4,-1.9 4,-2.2 -5,-0.2 -2,-0.2 0.906 110.4 46.9 -65.6 -46.9 -2.3 -3.1 30.6 47 46 B L H X S+ 0 0 85 -4,-2.4 4,-2.1 2,-0.2 -2,-0.2 0.936 112.7 48.8 -65.0 -45.1 -2.9 -2.7 27.0 48 47 B A H X S+ 0 0 55 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.926 112.7 48.0 -60.5 -46.4 -6.7 -3.3 27.3 49 48 B A H X S+ 0 0 51 -4,-2.2 4,-1.9 1,-0.2 -1,-0.2 0.850 109.4 54.5 -62.7 -33.9 -6.9 -0.8 30.1 50 49 B L H <>S+ 0 0 82 -4,-2.2 5,-1.8 2,-0.2 4,-0.4 0.917 109.7 46.6 -64.3 -44.3 -5.0 1.6 28.1 51 50 B L H ><5S+ 0 0 85 -4,-2.1 3,-1.6 1,-0.2 -2,-0.2 0.898 109.6 53.4 -62.9 -44.9 -7.4 1.3 25.2 52 51 B E H 3<5S+ 0 0 169 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.897 102.3 60.1 -58.9 -39.5 -10.3 1.7 27.4 53 52 B S T 3<5S- 0 0 90 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.606 127.3 -94.0 -66.0 -14.8 -8.8 4.9 28.8 54 53 B X T < 5 - 0 0 80 -3,-1.6 -3,-0.2 -4,-0.4 -2,-0.1 0.551 53.9-174.4 111.3 10.4 -8.9 6.5 25.4 55 54 B L < - 0 0 55 -5,-1.8 -1,-0.2 1,-0.1 -5,-0.0 -0.110 29.6-108.8 -44.6 127.3 -5.3 5.8 24.2 56 55 B S > - 0 0 48 1,-0.1 4,-1.6 4,-0.0 5,-0.1 -0.163 2.7-135.6 -61.8 145.9 -4.7 7.6 20.8 57 56 B K H > S+ 0 0 94 1,-0.2 4,-1.9 2,-0.2 -1,-0.1 0.856 110.9 56.7 -68.6 -32.8 -4.4 5.9 17.5 58 57 B E H > S+ 0 0 93 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.866 101.6 54.8 -65.5 -37.0 -1.4 8.2 17.0 59 58 B A H > S+ 0 0 38 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.899 110.4 45.6 -64.0 -39.9 0.3 6.9 20.2 60 59 B L H X S+ 0 0 72 -4,-1.6 4,-2.5 2,-0.2 -1,-0.2 0.865 109.4 56.4 -71.0 -32.7 0.0 3.3 18.8 61 60 B I H X S+ 0 0 63 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.884 110.0 44.8 -63.6 -41.2 1.3 4.4 15.4 62 61 B Q H < S+ 0 0 108 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.890 113.9 47.8 -71.6 -42.0 4.4 5.9 17.0 63 62 B A H < S+ 0 0 58 -4,-2.2 4,-0.5 1,-0.2 3,-0.2 0.908 113.4 49.4 -64.4 -39.8 5.0 2.8 19.2 64 63 B L H >< S+ 0 0 106 -4,-2.5 2,-1.3 1,-0.3 3,-1.0 0.942 111.6 49.4 -61.3 -51.4 4.5 0.5 16.2 65 64 B G T 3< S+ 0 0 61 -4,-2.2 -1,-0.3 1,-0.2 -4,-0.0 -0.774 113.3 45.3 -94.2 85.1 6.9 2.6 14.1 66 65 B E T 3 0 0 172 -2,-1.3 -1,-0.2 -3,-0.2 -2,-0.2 -0.128 360.0 360.0 164.6 -22.8 9.7 2.6 16.8 67 66 B W < 0 0 254 -3,-1.0 -1,-0.2 -4,-0.5 -3,-0.0 -0.445 360.0 360.0 -56.4 360.0 9.4 -1.0 17.5